Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Forward (+)

15733909 .. 15738731

Gene Structure 4823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12020.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGCCGCCGAGTCCGCGTTTGTCAGAAGTGGCGGGAGCAGCAGCACCGCCACCACGGCTGCCTTATTCAACAGCTCATCAACATGGAAACACTCCAAGAGAAAGACCCACCAATTTCTAAACACTCATTGTGTCTATGACAAGAACAGGTTCTACAAACAACTGGGATTATTTTCATTGAAAAAGAAGATTGAGGATGCTGTTCTACGAGCGGAGATGTTGGCCCCATTGGCGCTGGAACTTGAAGAAGAAAGACGGAATGAGCAGGAACAACTGATACGCGACTATGACCTTTGGGATGACACTGCTAAGTCCAACGAGATTCTTGCCAAATTGGCAGATAGTGTTAGAGTTGTTGATGCTCTAAGAGACTTGACATATAAGGCTGAAGAAGCAAAGCTTATTACACAGTTAGCAGAGATAGATGCTATCAATTATGGGCTTTTTAGGCAAGCATATGATGCATCTCTGGATATGAGCAAAATTTTGAATAAGTATGAGATTTCCAAGCTTCTTAAGGGACCATATGACATGGAGGGAGCATGTCTAATTATAAAAGCTGGTGGCAAAGGCTACCCTGAGGTTTGGGTTAAACAACTGCTAAGAATGTATACCAAATGGGCCAGAAAGCTAGGTTACAAAGGAAGGGTGGTAGAGAAGCGTTCTTCCACGAATGGTGGCATCAATTCAGCAACTATTGAGTTCGAACATGAGTTTGCTTATGGCTATCTGTCAGGAGAGGCAGGTGTACACTACATCATAAATTCTAACAATGGATCTGCCGTGCACGAGGTTAGCTCAGCAAGTGTGGATGTTGTTCCTCTATTTCTTGGACAAGCTTATGACATGCAAATTGATGAGGAAGATTTAACTATTGTATTGCCATCAAAGCTTGAAGAAGAGCAGAGGCAAAATGGTCCTCTAGTTTACATTCACCATAAACCCACATGCATAAGTGTCCAATCATCAGGTGAGAGGAGCCACTTTGCAAATAAGATGAAAGCCATGAACCGATTGAAAGCCAAGCTTCTCATCCTTGCATTGGAACAAGGAGTTACTAAGCCTAGTGATATCAGGAAAGATGAGATTTTCAATGTGTGGCAAAAGGAGACTCGAAGATACATGTCTCATCCATATAAGTTAGTCAAGGATGCAAAAACGGGTATCCAATTACCTGACCTTATGTCTGTTTTGGATGGAAATCTAGAGCCTCTTATTGCTGCTCATATTAATATAAGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

415

Amino Acids

46.81

Weight (kDa)

8.16

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	84 - 253	2.5e-23	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AarI	CACCTGC	1 cut(s)	734
Acc36I	ACCTGC	1 cut(s)	734
AccBSI	CCGCTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	611
AccII	CGCG	2 cut(s)	17, 282
AciI	CCGC	5 cut(s)	6, 15, 33, 48, 212
AclWI	GGATC	1 cut(s)	784
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	483, 763
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	750
AfiI	CCNNNNNNNGG	1 cut(s)	1042
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	1122
AgsI	TTSAA	7 cut(s)	70, 181, 245, 490, 896, 1018, 1093
AhdI	GACNNNNNGTC	1 cut(s)	1183
AluBI	AGCT	9 cut(s)	75, 400, 511, 560, 631, 798, 839, 892, 1027
AluI	AGCT	9 cut(s)	75, 400, 511, 560, 631, 798, 839, 892, 1027
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	3 cut(s)	363, 1103, 1131
Alw44I	GTGCAC	1 cut(s)	785
AlwI	GGATC	1 cut(s)	784
AoxI	GGCC	3 cut(s)	3, 222, 621
ApaLI	GTGCAC	1 cut(s)	785
ApeKI	GCWGC	4 cut(s)	39, 42, 59, 1220
ApoI	RAATTY	2 cut(s)	483, 763
AseI	ATTAAT	1 cut(s)	1230
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	4 cut(s)	223, 521, 621, 917
AsuHPI	GGTGA	2 cut(s)	926, 983
AsuII	TTCGAA	1 cut(s)	705
AvaII	GGWCC	2 cut(s)	521, 917
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	1 cut(s)	789
BauI	CACGAG	1 cut(s)	788
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	4 cut(s)	46, 51, 54, 1207
BccI	CCATC	2 cut(s)	892, 1190
BceAI	ACGGC	2 cut(s)	72, 767
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciVI	GTATCC	1 cut(s)	1175
BcoDI	GTCTC	3 cut(s)	363, 1103, 1131
BfaI	CTAG	4 cut(s)	632, 923, 1065, 1205
BfoI	RGCGCY	1 cut(s)	236
BfrI	CTTAAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	734
BfuI	GTATCC	1 cut(s)	1175
BglI	GCCNNNNNGGC	3 cut(s)	56, 230, 335
BisI	GCNGC	5 cut(s)	6, 40, 43, 60, 1221
BlpI	GCTNAGC	1 cut(s)	799
BlsI	GCNGC	5 cut(s)	7, 41, 44, 61, 1222
Bme18I	GGWCC	2 cut(s)	521, 917
BmeRI	GACNNNNNGTC	1 cut(s)	1183
BmgT120I	GGNCC	4 cut(s)	223, 521, 621, 917
BmiI	GGNNCC	3 cut(s)	225, 522, 980
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	7 cut(s)	187, 349, 415, 451, 473, 690, 1141
BmuI	ACTGGG	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	782, 814
Bpu1102I	GCTNAGC	1 cut(s)	799
Bpu14I	TTCGAA	1 cut(s)	705
BsaBI	GATNNNNATC	1 cut(s)	1200
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	1042
Bse1I	ACTGG	1 cut(s)	168
Bse21I	CCTNAGG	1 cut(s)	579
Bse8I	GATNNNNATC	1 cut(s)	1200
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	7 cut(s)	202, 304, 817, 1032, 1129, 1156, 1201
BseJI	GATNNNNATC	1 cut(s)	1200
BseLI	CCNNNNNNNGG	1 cut(s)	1042
BseMII	CTCAG	2 cut(s)	570, 813
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	991
BseSI	GKGCMC	1 cut(s)	789
BseXI	GCAGC	4 cut(s)	46, 51, 54, 1207
Bsh1236I	CGCG	2 cut(s)	17, 282
BshFI	GGCC	3 cut(s)	5, 224, 623
BsiHKAI	GWGCWC	1 cut(s)	789
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	1042
BsmAI	GTCTC	3 cut(s)	363, 1103, 1131
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	3 cut(s)	5, 224, 623
Bsp119I	TTCGAA	1 cut(s)	705
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp1407I	TGTACA	1 cut(s)	748
Bsp143I	GATC	1 cut(s)	776
Bsp1720I	GCTNAGC	1 cut(s)	799
BspACI	CCGC	5 cut(s)	6, 15, 33, 48, 212
BspANI	GGCC	3 cut(s)	5, 224, 623
BspCNI	CTCAG	2 cut(s)	571, 812
BspFNI	CGCG	2 cut(s)	17, 282
BspLI	GGNNCC	3 cut(s)	225, 522, 980
BspMI	ACCTGC	1 cut(s)	734
BspPI	GGATC	1 cut(s)	784
BspQI	GCTCTTC	1 cut(s)	894
BspT104I	TTCGAA	1 cut(s)	705
BspTI	CTTAAG	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	748
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	776
BssNAI	GTATAC	1 cut(s)	612
BssSI	CACGAG	1 cut(s)	788
Bst1107I	GTATAC	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	788
Bst4CI	ACNGT	2 cut(s)	411, 1242
Bst6I	CTCTTC	1 cut(s)	894
BstAFI	CTTAAG	1 cut(s)	515
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	748
BstBI	TTCGAA	1 cut(s)	705
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	6 cut(s)	309, 365, 579, 602, 799, 1059
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	7 cut(s)	202, 304, 817, 1032, 1129, 1156, 1201
BstFNI	CGCG	2 cut(s)	17, 282
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	1 cut(s)	779
BstMAI	GTCTC	3 cut(s)	363, 1103, 1131
BstMBI	GATC	1 cut(s)	776
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 39, 56, 230, 335, 392, 448, 461, 889
BstNSI	RCATGY	4 cut(s)	546, 850, 951, 1126
BstSLI	GKGCMC	1 cut(s)	789
BstUI	CGCG	2 cut(s)	17, 282
BstV1I	GCAGC	4 cut(s)	46, 51, 54, 1207
BstX2I	RGATCY	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	776
BstZ17I	GTATAC	1 cut(s)	612
Bsu36I	CCTNAGG	1 cut(s)	579
BsuI	GTATCC	1 cut(s)	1175
BsuRI	GGCC	3 cut(s)	5, 224, 623
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	7 cut(s)	202, 304, 817, 1032, 1129, 1156, 1201
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	1 cut(s)	453
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	4 cut(s)	223, 521, 621, 917
Csp6I	GTAC	1 cut(s)	749
CviAII	CATG	8 cut(s)	84, 532, 543, 710, 847, 948, 1006, 1123
CviQI	GTAC	1 cut(s)	749
DdeI	CTNAG	6 cut(s)	309, 365, 579, 602, 799, 1059
DpnI	GATC	1 cut(s)	778
DpnII	GATC	1 cut(s)	776
DriI	GACNNNNNGTC	1 cut(s)	1183
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	894
Eam1105I	GACNNNNNGTC	1 cut(s)	1183
EarI	CTCTTC	1 cut(s)	894
Eco32I	GATATC	1 cut(s)	1072
Eco47I	GGWCC	2 cut(s)	521, 917
Eco57I	CTGAAG	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	579
EcoRV	GATATC	1 cut(s)	1072
EcoT22I	ATGCAT	2 cut(s)	466, 953
FaeI	CATG	8 cut(s)	87, 535, 546, 713, 850, 951, 1009, 1126
FalI	AAGNNNNNCTT	4 cut(s)	384, 416, 1011, 1043
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	8 cut(s)	83, 531, 542, 709, 846, 947, 1005, 1122
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	2 cut(s)	457, 526
FblI	GTMKAC	1 cut(s)	611
Fnu4HI	GCNGC	5 cut(s)	6, 40, 43, 60, 1221
FokI	GGATG	7 cut(s)	209, 311, 824, 1019, 1116, 1163, 1208
Fsp4HI	GCNGC	5 cut(s)	6, 40, 43, 60, 1221
FspBI	CTAG	4 cut(s)	632, 923, 1065, 1205
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	5 cut(s)	6, 40, 43, 60, 1221
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	5, 224, 623
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	8 cut(s)	87, 535, 546, 713, 850, 951, 1009, 1126
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HindIII	AAGCTT	5 cut(s)	398, 509, 837, 890, 1025
HinfI	GANTC	3 cut(s)	11, 322, 1111
HphI	GGTGA	2 cut(s)	926, 983
Hpy166II	GTNNAC	5 cut(s)	612, 749, 751, 787, 928
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	4 cut(s)	470, 735, 1075, 1205
Hpy8I	GTNNAC	5 cut(s)	612, 749, 751, 787, 928
HpyAV	CCTTC	1 cut(s)	639
HpyCH4III	ACNGT	2 cut(s)	411, 1242
HpyCH4V	TGCA	7 cut(s)	464, 787, 850, 951, 989, 1040, 1154
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 39, 56, 230, 335, 392, 448, 461, 889
HpyF3I	CTNAG	6 cut(s)	309, 365, 579, 602, 799, 1059
Hsp92II	CATG	8 cut(s)	87, 535, 546, 713, 850, 951, 1009, 1126
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	776
LguI	GCTCTTC	1 cut(s)	894
LmnI	GCTCC	3 cut(s)	36, 539, 978
Lsp1109I	GCAGC	4 cut(s)	46, 51, 54, 1207
LweI	GCATC	7 cut(s)	187, 349, 415, 451, 473, 690, 1141
MaeI	CTAG	4 cut(s)	632, 923, 1065, 1205
MaeIII	GTNAC	2 cut(s)	635, 1054
MalI	GATC	1 cut(s)	778
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	1 cut(s)	776
MboII	GAAGA	9 cut(s)	199, 257, 260, 401, 657, 875, 908, 911, 1128
MflI	RGATCY	1 cut(s)	776
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	9 cut(s)	113, 332, 433, 483, 549, 685, 763, 852, 1169
MlyI	GAGTC	2 cut(s)	20, 1105
MmeI	TCCRAC	1 cut(s)	339
Mph1103I	ATGCAT	2 cut(s)	466, 953
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	4 cut(s)	516, 591, 869, 1230
MslI	CAYNNNNRTG	1 cut(s)	82
MspCI	CTTAAG	1 cut(s)	515
MvnI	CGCG	2 cut(s)	17, 282
MwoI	GCNNNNNNNGC	9 cut(s)	14, 39, 56, 230, 335, 392, 448, 461, 889
NdeI	CATATG	2 cut(s)	457, 526
NdeII	GATC	1 cut(s)	776
NlaIII	CATG	8 cut(s)	87, 535, 546, 713, 850, 951, 1009, 1126
NlaIV	GGNNCC	3 cut(s)	225, 522, 980
NmeAIII	GCCGAG	1 cut(s)	34
NsiI	ATGCAT	2 cut(s)	466, 953
NspI	RCATGY	4 cut(s)	546, 850, 951, 1126
NspV	TTCGAA	1 cut(s)	705
PaqCI	CACCTGC	1 cut(s)	734
PciI	ACATGT	1 cut(s)	1122
PciSI	GCTCTTC	1 cut(s)	894
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	5 cut(s)	7, 41, 44, 61, 1222
PleI	GAGTC	2 cut(s)	19, 1105
PpsI	GAGTC	2 cut(s)	19, 1105
PscI	ACATGT	1 cut(s)	1122
PshBI	ATTAAT	1 cut(s)	1230
PsiI	TTATAA	1 cut(s)	554
PspN4I	GGNNCC	3 cut(s)	225, 522, 980
PspPI	GGNCC	4 cut(s)	223, 521, 621, 917
PsrI	GAACNNNNNNTAC	4 cut(s)	137, 169, 261, 293
PsuI	RGATCY	1 cut(s)	776
RsaI	GTAC	1 cut(s)	750
RsaNI	GTAC	1 cut(s)	749
RseI	CAYNNNNRTG	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	894
SaqAI	TTAA	4 cut(s)	516, 591, 869, 1230
SatI	GCNGC	5 cut(s)	6, 40, 43, 60, 1221
Sau3AI	GATC	1 cut(s)	776
Sau96I	GGNCC	4 cut(s)	223, 521, 621, 917
SchI	GAGTC	2 cut(s)	20, 1105
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	7 cut(s)	187, 349, 415, 451, 473, 690, 1141
SfuI	TTCGAA	1 cut(s)	705
SinI	GGWCC	2 cut(s)	521, 917
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	9 cut(s)	113, 332, 433, 483, 549, 685, 763, 852, 1169
SsiI	CCGC	5 cut(s)	6, 15, 33, 48, 212
SspMI	CTAG	4 cut(s)	632, 923, 1065, 1205
TaaI	ACNGT	2 cut(s)	411, 1242
TaqI	TCGA	2 cut(s)	705, 1114
TasI	AATT	9 cut(s)	113, 332, 433, 483, 549, 685, 763, 852, 1169
TatI	WGTACW	1 cut(s)	748
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	4 cut(s)	516, 591, 869, 1230
Tru9I	TTAA	4 cut(s)	516, 591, 869, 1230
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	4 cut(s)	39, 42, 59, 1220
TspDTI	ATGAA	3 cut(s)	165, 1013, 1022
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	310
Vha464I	CTTAAG	1 cut(s)	515
VneI	GTGCAC	1 cut(s)	785
VpaK11BI	GGWCC	2 cut(s)	521, 917
VspI	ATTAAT	1 cut(s)	1230
XapI	RAATTY	2 cut(s)	483, 763
XbaI	TCTAGA	1 cut(s)	1204
XceI	RCATGY	4 cut(s)	546, 850, 951, 1126
XmiI	GTMKAC	1 cut(s)	611
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	4 cut(s)	632, 923, 1065, 1205
Zsp2I	ATGCAT	2 cut(s)	466, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.