AT3G62180

Invertase pectin methylesterase inhibitor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003768
Physical Location & Seq
Reverse (-)
23019584 .. 23020598
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62180.2

Sequence Viewer

Length: 648 bp
ATGAACACTCCAATCAAACTCTTCTTTCTCTTCATATTCGTTGCCGCAACCGCAACGGCTAAACCAGTCAAACGAACGAACTACCTTTTCACACCGCACGCCAAAGCAGTCGCGGGAATCTGCACCGTTATCCCAACGGACACAAGTCTATGTTGCAAAACCCTTAAACACGTTCCTACCAATGACCCCATCGAACTAATCCGAGCATTAGTGGCTGCCGCTGAAACATCCGTCAAACAAAGTGTGACTTTCCTCTCTGGAATCAAACCAAAACACATGTCAGACGCAACCGCAACCGCAGTGGTCAACAGCTGCGAGAAAAACTTGAATTACGCGTTGGAAGATTTCGCCGATTTTTGGAAAGCTACGGGGAAAGATGTAACGACGTTGGCTCATAATTATTTTACGTGTAAAAAAGAGTTAATGTCAATCATGGGGTATCATTCGACTTGTTTGGACGATATTGAAGACAAGATTTTGTTGAAGGAAGTGGGGATTGGGATTGGAGTTGGGAAGAATCTAACAAGTGATTCTTTTGATGTGTTTAATAACTTGAATACTATTTTCAAGACTTTTGGTATTAAGGTGAAGCTTAACGAGGAAGACACTTCGCCCCGACCGCCACCCTTGTCTGATTATTATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

215

Amino Acids

23.73

Weight (kDa)

7.59

Isoelectric Point (pI)

28.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 68 - 193 4.4e-13 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 113, 335
AciI CCGC 8 cut(s) 45, 51, 95, 113, 219, 291, 297, 620
AfiI CCNNNNNNNGG 1 cut(s) 357
AflIII ACRYGT 4 cut(s) 169, 276, 333, 407
AgsI TTSAA 5 cut(s) 328, 467, 484, 556, 568
AjuI GAANNNNNNNTTGG 4 cut(s) 320, 352, 480, 512
AluBI AGCT 3 cut(s) 312, 365, 592
AluI AGCT 3 cut(s) 312, 365, 592
ApeKI GCWGC 2 cut(s) 215, 312
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AsuHPI GGTGA 1 cut(s) 598
BbsI GAAGAC 2 cut(s) 474, 609
BbvI GCAGC 2 cut(s) 202, 299
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 72
BisI GCNGC 4 cut(s) 45, 216, 219, 313
BlsI GCNGC 4 cut(s) 46, 217, 220, 314
BoxI GACNNNNGTC 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 474, 609
BsaAI YACGTR 1 cut(s) 408
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 202, 299
BsgI GTGCAG 1 cut(s) 106
Bsh1236I CGCG 2 cut(s) 113, 335
Bsh1285I CGRYCG 1 cut(s) 620
BsiEI CGRYCG 1 cut(s) 620
BslI CCNNNNNNNGG 1 cut(s) 357
BspACI CCGC 8 cut(s) 45, 51, 95, 113, 219, 291, 297, 620
BspFNI CGCG 2 cut(s) 113, 335
BsrI ACTGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 2 cut(s) 26, 35
BstBAI YACGTR 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 227
BstFNI CGCG 2 cut(s) 113, 335
BstMCI CGRYCG 1 cut(s) 620
BstMWI GCNNNNNNNGC 3 cut(s) 50, 212, 619
BstNSI RCATGY 1 cut(s) 280
BstPAI GACNNNNGTC 1 cut(s) 144
BstUI CGCG 2 cut(s) 113, 335
BstV1I GCAGC 2 cut(s) 202, 299
BstV2I GAAGAC 2 cut(s) 474, 609
BtsCI GGATG 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 99
CseI GACGC 1 cut(s) 293
CspCI CAANNNNNGTGG 2 cut(s) 282, 317
CviAII CATG 2 cut(s) 277, 433
CviJI RGCY 6 cut(s) 59, 215, 312, 365, 392, 592
CviKI_1 RGCY 6 cut(s) 59, 215, 312, 365, 392, 592
Eam1104I CTCTTC 2 cut(s) 26, 35
EarI CTCTTC 2 cut(s) 26, 35
FaeI CATG 2 cut(s) 280, 436
FaiI YATR 5 cut(s) 35, 151, 278, 396, 434
FalI AAGNNNNNCTT 4 cut(s) 232, 264, 517, 549
FatI CATG 2 cut(s) 276, 432
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 45, 216, 219, 313
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 4 cut(s) 45, 216, 219, 313
GluI GCNGC 4 cut(s) 45, 216, 219, 313
HgaI GACGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 280, 436
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 4 cut(s) 117, 261, 517, 530
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 203, 283, 634
Hpy188III TCNNGA 2 cut(s) 258, 568
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 3 cut(s) 171, 386, 407
HpyCH4V TGCA 2 cut(s) 123, 156
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 212, 619
HpySE526I ACGT 3 cut(s) 171, 386, 407
Hsp92II CATG 2 cut(s) 280, 436
LpnPI CCDG 2 cut(s) 78, 243
Lsp1109I GCAGC 2 cut(s) 202, 299
MaeII ACGT 3 cut(s) 171, 386, 407
MaeIII GTNAC 2 cut(s) 244, 379
MboII GAAGA 6 cut(s) 13, 22, 353, 479, 526, 614
MluCI AATT 2 cut(s) 328, 397
MluI ACGCGT 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 2 cut(s) 263, 592
MseI TTAA 5 cut(s) 165, 422, 546, 582, 594
MspA1I CMGCKG 2 cut(s) 221, 312
MvnI CGCG 2 cut(s) 113, 335
MwoI GCNNNNNNNGC 3 cut(s) 50, 212, 619
NlaIII CATG 2 cut(s) 280, 436
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 280
PciI ACATGT 1 cut(s) 276
PfeI GAWTC 4 cut(s) 117, 261, 517, 530
PkrI GCNGC 4 cut(s) 46, 217, 220, 314
Ppu21I YACGTR 1 cut(s) 408
PscI ACATGT 1 cut(s) 276
PshAI GACNNNNGTC 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 312
SaqAI TTAA 5 cut(s) 165, 422, 546, 582, 594
SatI GCNGC 4 cut(s) 45, 216, 219, 313
SetI ASST 8 cut(s) 87, 174, 314, 367, 389, 410, 588, 594
Sse9I AATT 2 cut(s) 328, 397
SsiI CCGC 8 cut(s) 45, 51, 95, 113, 219, 291, 297, 620
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 3 cut(s) 174, 389, 410
TaqI TCGA 2 cut(s) 192, 446
TasI AATT 2 cut(s) 328, 397
TauI GCSGC 2 cut(s) 47, 221
TfiI GAWTC 4 cut(s) 117, 261, 517, 530
Tru1I TTAA 5 cut(s) 165, 422, 546, 582, 594
Tru9I TTAA 5 cut(s) 165, 422, 546, 582, 594
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 215, 312
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 17, 22
TspGWI ACGGA 2 cut(s) 152, 220
TspRI CASTG 1 cut(s) 306
XceI RCATGY 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.