AT3G62830

UDP-glucuronic acid decarboxylase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
23232272 .. 23235567
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62830.1

Sequence Viewer

Length: 1338 bp
ATGGCGAGCGAGCTGATCAATCGGCGACACGAGACGGATCAACCAACCGCCGATGCTTATTACCCGAAACCAATCAAACCATGGTTCACGGTGACTCGTCCGATGCGTTACATGCTCCGTGAACAGAGACTTATCTTCGTTCTCGTTGGCATTGCAATCGCTACTTTGGTTTTCACAATTTTCCCTCGCTCCACACAATCAACCCCTTACTCGGATCCTTTCTCCGGTTACGGAATCCGACCCGACGAATCGTACGTTCCGGCTATACAAGCTCAGAGGAAACCTAGCCTCGAGTACCTGAACCGGATCGGAGCAACAGGCGGGAAAATCCCACTGGGATTGAAACGCAAAGGGCTAAGAGTGGTTGTGACCGGTGGTGCTGGATTCGTTGGATCGCATCTCGTGGATCGTTTGATGGCTAGAGGAGATACTGTGATTGTTGTTGATAATTTCTTCACTGGAAGGAAAGAGAACGTTATGCACCATTTCAGTAACCCTAACTTTGAGATGATCCGTCACGATGTGGTTGAGCCGATTCTTCTTGAGGTTGATCAGATCTACCATTTGGCTTGCCCTGCTTCTCCTGTTCATTACAAATTCAATCCCGTCAAGACTATCAAGACGAATGTGGTTGGAACATTGAACATGCTTGGTTTGGCTAAGCGAGTTGGGGCTAGATTTCTTCTGACGAGTACCAGTGAGGTTTATGGTGATCCTCTGCAGCATCCTCAGGTTGAGACTTACTGGGGCAACGTTAATCCCATTGGTGTTCGTAGTTGCTACGATGAAGGAAAACGTACGGCAGAGACGTTGACCATGGACTATCACCGAGGTGCCAATGTTGAGGTCAGAATTGCTAGGATCTTCAACACCTATGGTCCAAGAATGTGTATAGATGATGGGCGTGTTGTTAGTAACTTCGTTGCACAGGCACTAAGGAAAGAGCCATTGACTGTTTACGGTGATGGGAAGCAGACAAGGAGTTTCCAATTTGTTTCTGATCTGGTTGAAGGTTTGATGAGACTGATGGAAGGAGAACATGTCGGCCCATTCAACCTCGGTAACCCTGGTGAATTCACGATGCTCGAGCTCGCTAAGGTGGTCCAAGAGACAATTGATCCGAATGCAAACATAGAGTTCAGACCAAACACAGAAGACGACCCTCACAAGAGAAAGCCTGACATCACAAAGGCCAAAGAGCTTTTAGGTTGGGAACCAAAGGTCTCTCTTCGTCAGGGACTGCCTCTCATGGTCAAAGATTTCCGTCAACGTGTCTTTGGTGACCAGAAGGAAGGCTCCTCCGCAGCTGCAACCACCACCAAGACAACTTCAGCTTGA

Protein Analysis

445

Amino Acids

49.97

Weight (kDa)

9.19

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 120 - 382 3.6e-09 RmlD substrate binding domain
Epimerase PF01370 121 - 354 1.4e-46 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 122 - 274 1.3e-12 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 123 - 415 8.6e-56 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 176 - 288 8.3e-06 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 833
AciI CCGC 3 cut(s) 48, 321, 1302
AclI AACGTT 2 cut(s) 474, 753
AcsI RAATTY 2 cut(s) 596, 1073
AcuI CTGAAG 1 cut(s) 1314
AdeI CACNNNGTG 1 cut(s) 523
AfaI GTAC 4 cut(s) 254, 296, 694, 799
AfiI CCNNNNNNNGG 2 cut(s) 211, 224
AflIII ACRYGT 2 cut(s) 1039, 1270
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 6 cut(s) 343, 601, 643, 868, 1010, 1054
AjnI CCWGG 1 cut(s) 1066
AleI CACNNNNGTG 1 cut(s) 831
AluBI AGCT 6 cut(s) 13, 272, 1090, 1201, 1307, 1334
AluI AGCT 6 cut(s) 13, 272, 1090, 1201, 1307, 1334
Alw21I GWGCWC 1 cut(s) 1092
Alw26I GTCTC 7 cut(s) 26, 121, 731, 800, 1015, 1103, 1228
AlwNI CAGNNNCTG 1 cut(s) 1240
Ama87I CYCGRG 2 cut(s) 290, 1085
AoxI GGCC 2 cut(s) 1045, 1191
ApeKI GCWGC 3 cut(s) 721, 1304, 1307
ApoI RAATTY 2 cut(s) 596, 1073
AsiGI ACCGGT 1 cut(s) 371
AspS9I GGNCC 3 cut(s) 878, 1046, 1102
AsuHPI GGTGA 6 cut(s) 103, 722, 818, 974, 1082, 1292
AvaI CYCGRG 2 cut(s) 290, 1085
AvaII GGWCC 2 cut(s) 878, 1102
AxyI CCTNAGG 1 cut(s) 729
BamHI GGATCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 833
BanII GRGCYC 1 cut(s) 1092
BauI CACGAG 2 cut(s) 29, 401
BbsI GAAGAC 1 cut(s) 1161
Bbv12I GWGCWC 1 cut(s) 1092
BbvI GCAGC 3 cut(s) 733, 1294, 1316
BccI CCATC 4 cut(s) 409, 893, 959, 1021
BceAI ACGGC 1 cut(s) 816
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 1068
BclI TGATCA 2 cut(s) 15, 550
BcoDI GTCTC 7 cut(s) 26, 121, 731, 800, 1015, 1103, 1228
BfaI CTAG 4 cut(s) 285, 420, 675, 858
BfmI CTRYAG 1 cut(s) 719
BglII AGATCT 1 cut(s) 555
BisI GCNGC 3 cut(s) 722, 1305, 1308
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 3 cut(s) 723, 1306, 1309
Bme1390I CCNGG 1 cut(s) 1068
Bme18I GGWCC 2 cut(s) 878, 1102
BmeT110I CYCGRG 2 cut(s) 290, 1085
BmgT120I GGNCC 3 cut(s) 878, 1046, 1102
BmiI GGNNCC 4 cut(s) 216, 835, 1215, 1297
BmrFI CCNGG 1 cut(s) 1068
BmrI ACTGGG 2 cut(s) 344, 754
BmsI GCATC 5 cut(s) 43, 93, 406, 733, 1071
BmuI ACTGGG 2 cut(s) 344, 754
BpiI GAAGAC 1 cut(s) 1161
Bpu10I CCTNAGC 1 cut(s) 1095
Bpu1102I GCTNAGC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 1228
BsaJI CCNNGG 5 cut(s) 80, 816, 829, 1057, 1066
BsaWI WCCGGW 3 cut(s) 224, 303, 371
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 1026, 1056
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 224
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 4 cut(s) 339, 463, 696, 749
Bse21I CCTNAGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 1068
BseDI CCNNGG 5 cut(s) 80, 816, 829, 1057, 1066
BseGI GGATG 1 cut(s) 724
BseLI CCNNNNNNNGG 2 cut(s) 211, 224
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 287, 743
BseNI ACTGG 4 cut(s) 339, 463, 696, 749
BseRI GAGGAG 2 cut(s) 438, 1288
BseXI GCAGC 3 cut(s) 733, 1294, 1316
BshFI GGCC 2 cut(s) 1047, 1193
BshNI GGYRCC 1 cut(s) 833
BshTI ACCGGT 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 1092
BsiHKCI CYCGRG 2 cut(s) 290, 1085
BsiSI CCGG 4 cut(s) 225, 260, 304, 372
BsiWI CGTACG 2 cut(s) 252, 797
BslFI GGGAC 1 cut(s) 1251
BslI CCNNNNNNNGG 2 cut(s) 211, 224
BsmAI GTCTC 7 cut(s) 26, 121, 731, 800, 1015, 1103, 1228
BsmBI CGTCTC 2 cut(s) 26, 800
BsmFI GGGAC 1 cut(s) 1251
BsmI GAATGC 1 cut(s) 1129
BsnI GGCC 2 cut(s) 1047, 1193
Bso31I GGTCTC 1 cut(s) 1228
BsoBI CYCGRG 2 cut(s) 290, 1085
Bsp1286I GDGCHC 1 cut(s) 1092
Bsp1720I GCTNAGC 1 cut(s) 660
Bsp19I CCATGG 2 cut(s) 80, 816
BspACI CCGC 3 cut(s) 48, 321, 1302
BspANI GGCC 2 cut(s) 1047, 1193
BspCNI CTCAG 2 cut(s) 286, 742
BspLI GGNNCC 4 cut(s) 216, 835, 1215, 1297
BspMAI CTGCAG 1 cut(s) 723
BspT107I GGYRCC 1 cut(s) 833
BspTNI GGTCTC 1 cut(s) 1228
BsrDI GCAATG 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 4 cut(s) 339, 463, 696, 749
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 5 cut(s) 80, 816, 829, 1057, 1066
BssSI CACGAG 2 cut(s) 29, 401
BssT1I CCWWGG 2 cut(s) 80, 816
Bst2BI CACGAG 2 cut(s) 29, 401
Bst2UI CCWGG 1 cut(s) 1068
Bst4CI ACNGT 4 cut(s) 91, 433, 955, 962
Bst6I CTCTTC 1 cut(s) 1233
BstC8I GCNNGC 4 cut(s) 7, 11, 571, 1092
BstDEI CTNAG 6 cut(s) 273, 356, 660, 729, 935, 1095
BstDSI CCRYGG 2 cut(s) 80, 816
BstEII GGTNACC 2 cut(s) 1061, 1280
BstF5I GGATG 1 cut(s) 724
BstMAI GTCTC 7 cut(s) 26, 121, 731, 800, 1015, 1103, 1228
BstMWI GCNNNNNNNGC 3 cut(s) 112, 269, 575
BstNI CCWGG 1 cut(s) 1068
BstNSI RCATGY 3 cut(s) 115, 649, 1043
BstPI GGTNACC 2 cut(s) 1061, 1280
BstSCI CCNGG 1 cut(s) 1066
BstSFI CTRYAG 1 cut(s) 719
BstV1I GCAGC 3 cut(s) 733, 1294, 1316
BstV2I GAAGAC 1 cut(s) 1161
BstX2I RGATCY 3 cut(s) 214, 555, 861
BstYI RGATCY 3 cut(s) 214, 555, 861
Bsu36I CCTNAGG 1 cut(s) 729
BsuRI GGCC 2 cut(s) 1047, 1193
BtgI CCRYGG 2 cut(s) 80, 816
BtsCI GGATG 1 cut(s) 724
BtsIMutI CAGTG 3 cut(s) 332, 456, 703
Cac8I GCNNGC 4 cut(s) 7, 11, 571, 1092
CaiI CAGNNNCTG 1 cut(s) 1240
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 3 cut(s) 878, 1046, 1102
Csp6I GTAC 4 cut(s) 253, 295, 693, 798
CspAI ACCGGT 1 cut(s) 371
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CviAII CATG 6 cut(s) 81, 112, 646, 817, 1040, 1249
CviQI GTAC 4 cut(s) 253, 295, 693, 798
DdeI CTNAG 6 cut(s) 273, 356, 660, 729, 935, 1095
DraIII CACNNNGTG 1 cut(s) 523
Eam1104I CTCTTC 1 cut(s) 1233
EarI CTCTTC 1 cut(s) 1233
Ecl136II GAGCTC 1 cut(s) 1090
Eco130I CCWWGG 2 cut(s) 80, 816
Eco24I GRGCYC 1 cut(s) 1092
Eco31I GGTCTC 1 cut(s) 1228
Eco47I GGWCC 2 cut(s) 878, 1102
Eco53kI GAGCTC 1 cut(s) 1090
Eco57I CTGAAG 1 cut(s) 1314
Eco81I CCTNAGG 1 cut(s) 729
Eco88I CYCGRG 2 cut(s) 290, 1085
Eco91I GGTNACC 2 cut(s) 1061, 1280
EcoICRI GAGCTC 1 cut(s) 1090
EcoO65I GGTNACC 2 cut(s) 1061, 1280
EcoRI GAATTC 1 cut(s) 1073
EcoRII CCWGG 1 cut(s) 1066
EcoT14I CCWWGG 2 cut(s) 80, 816
EcoT38I GRGCYC 1 cut(s) 1092
ErhI CCWWGG 2 cut(s) 80, 816
Esp3I CGTCTC 2 cut(s) 26, 800
FaeI CATG 6 cut(s) 84, 115, 649, 820, 1043, 1252
FaqI GGGAC 1 cut(s) 1251
FatI CATG 6 cut(s) 80, 111, 645, 816, 1039, 1248
FauI CCCGC 1 cut(s) 314
FbaI TGATCA 2 cut(s) 15, 550
Fnu4HI GCNGC 3 cut(s) 722, 1305, 1308
FokI GGATG 1 cut(s) 711
FriOI GRGCYC 1 cut(s) 1092
Fsp4HI GCNGC 3 cut(s) 722, 1305, 1308
FspBI CTAG 4 cut(s) 285, 420, 675, 858
GluI GCNGC 3 cut(s) 722, 1305, 1308
HaeIII GGCC 2 cut(s) 1047, 1193
HapII CCGG 4 cut(s) 225, 260, 304, 372
Hin1II CATG 6 cut(s) 84, 115, 649, 820, 1043, 1252
HincII GTYRAC 2 cut(s) 813, 1268
HindII GTYRAC 2 cut(s) 813, 1268
HinfI GANTC 5 cut(s) 94, 234, 248, 384, 535
HpaII CCGG 4 cut(s) 225, 260, 304, 372
HphI GGTGA 6 cut(s) 103, 722, 818, 974, 1082, 1292
Hpy166II GTNNAC 5 cut(s) 87, 122, 813, 958, 1268
Hpy188III TCNNGA 5 cut(s) 518, 542, 610, 619, 1078
Hpy8I GTNNAC 5 cut(s) 87, 122, 813, 958, 1268
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 6 cut(s) 456, 782, 1004, 1025, 1282, 1286
HpyCH4III ACNGT 4 cut(s) 91, 433, 955, 962
HpyCH4IV ACGT 6 cut(s) 255, 474, 753, 796, 809, 1270
HpyCH4V TGCA 6 cut(s) 155, 481, 721, 926, 1127, 1310
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 269, 575
HpyF3I CTNAG 6 cut(s) 273, 356, 660, 729, 935, 1095
HpySE526I ACGT 6 cut(s) 255, 474, 753, 796, 809, 1270
Hsp92II CATG 6 cut(s) 84, 115, 649, 820, 1043, 1252
Ksp22I TGATCA 2 cut(s) 15, 550
LmnI GCTCC 4 cut(s) 120, 194, 311, 1301
Lsp1109I GCAGC 3 cut(s) 733, 1294, 1316
LweI GCATC 5 cut(s) 43, 93, 406, 733, 1071
MaeI CTAG 4 cut(s) 285, 420, 675, 858
MaeII ACGT 6 cut(s) 255, 474, 753, 796, 809, 1270
MaeIII GTNAC 9 cut(s) 91, 107, 227, 367, 491, 515, 914, 1061, 1280
MboII GAAGA 7 cut(s) 127, 445, 530, 674, 856, 1166, 1220
MfeI CAATTG 1 cut(s) 1113
MflI RGATCY 3 cut(s) 214, 555, 861
MhlI GDGCHC 1 cut(s) 1092
MluCI AATT 7 cut(s) 177, 448, 596, 852, 989, 1073, 1113
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 3 cut(s) 262, 370, 613
MseI TTAA 1 cut(s) 756
MslI CAYNNNNRTG 1 cut(s) 831
MspA1I CMGCKG 1 cut(s) 1307
MspI CCGG 4 cut(s) 225, 260, 304, 372
MspR9I CCNGG 1 cut(s) 1068
MunI CAATTG 1 cut(s) 1113
Mva1269I GAATGC 1 cut(s) 1129
MvaI CCWGG 1 cut(s) 1068
MwoI GCNNNNNNNGC 3 cut(s) 112, 269, 575
NcoI CCATGG 2 cut(s) 80, 816
NlaIII CATG 6 cut(s) 84, 115, 649, 820, 1043, 1252
NlaIV GGNNCC 4 cut(s) 216, 835, 1215, 1297
NmuCI GTSAC 4 cut(s) 91, 367, 515, 1280
NspI RCATGY 3 cut(s) 115, 649, 1043
OliI CACNNNNGTG 1 cut(s) 831
PaeR7I CTCGAG 2 cut(s) 290, 1085
PciI ACATGT 1 cut(s) 1039
PcsI WCGNNNNNNNCGW 3 cut(s) 103, 252, 806
PctI GAATGC 1 cut(s) 1129
PfeI GAWTC 4 cut(s) 234, 248, 384, 535
Pfl23II CGTACG 2 cut(s) 252, 797
PinAI ACCGGT 1 cut(s) 371
PkrI GCNGC 3 cut(s) 723, 1306, 1309
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PscI ACATGT 1 cut(s) 1039
Psp124BI GAGCTC 1 cut(s) 1092
Psp1406I AACGTT 2 cut(s) 474, 753
Psp6I CCWGG 1 cut(s) 1066
PspEI GGTNACC 2 cut(s) 1061, 1280
PspGI CCWGG 1 cut(s) 1066
PspLI CGTACG 2 cut(s) 252, 797
PspN4I GGNNCC 4 cut(s) 216, 835, 1215, 1297
PspPI GGNCC 3 cut(s) 878, 1046, 1102
PspXI VCTCGAGB 2 cut(s) 290, 1085
PstI CTGCAG 1 cut(s) 723
PstNI CAGNNNCTG 1 cut(s) 1240
PsuI RGATCY 3 cut(s) 214, 555, 861
PvuII CAGCTG 1 cut(s) 1307
RsaI GTAC 4 cut(s) 254, 296, 694, 799
RsaNI GTAC 4 cut(s) 253, 295, 693, 798
RseI CAYNNNNRTG 1 cut(s) 831
SacI GAGCTC 1 cut(s) 1092
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 3 cut(s) 722, 1305, 1308
Sau96I GGNCC 3 cut(s) 878, 1046, 1102
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 1068
SduI GDGCHC 1 cut(s) 1092
SfaNI GCATC 5 cut(s) 43, 93, 406, 733, 1071
SfcI CTRYAG 1 cut(s) 719
Sfr274I CTCGAG 2 cut(s) 290, 1085
SinI GGWCC 2 cut(s) 878, 1102
SlaI CTCGAG 2 cut(s) 290, 1085
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 3 cut(s) 290, 542, 1085
SmoI CTYRAG 3 cut(s) 290, 542, 1085
Sse9I AATT 7 cut(s) 177, 448, 596, 852, 989, 1073, 1113
SsiI CCGC 3 cut(s) 48, 321, 1302
SspMI CTAG 4 cut(s) 285, 420, 675, 858
SstI GAGCTC 1 cut(s) 1092
StyD4I CCNGG 1 cut(s) 1066
StyI CCWWGG 2 cut(s) 80, 816
TaaI ACNGT 4 cut(s) 91, 433, 955, 962
TaiI ACGT 6 cut(s) 258, 477, 756, 799, 812, 1273
TaqI TCGA 2 cut(s) 291, 1086
TasI AATT 7 cut(s) 177, 448, 596, 852, 989, 1073, 1113
TfiI GAWTC 4 cut(s) 234, 248, 384, 535
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 3 cut(s) 339, 463, 703
TseFI GTSAC 4 cut(s) 91, 367, 515, 1280
TseI GCWGC 3 cut(s) 721, 1304, 1307
Tsp45I GTSAC 4 cut(s) 91, 367, 515, 1280
TspDTI ATGAA 2 cut(s) 578, 801
TspGWI ACGGA 5 cut(s) 50, 107, 246, 503, 1253
TspRI CASTG 3 cut(s) 339, 463, 703
VpaK11BI GGWCC 2 cut(s) 878, 1102
XapI RAATTY 2 cut(s) 596, 1073
XceI RCATGY 3 cut(s) 115, 649, 1043
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XhoI CTCGAG 2 cut(s) 290, 1085
XspI CTAG 4 cut(s) 285, 420, 675, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.