Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002167

Physical Location & Seq

Genomic Coordinates Forward (+)

48423825 .. 48426526

Gene Structure 2702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39230

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGCATGGAAGTCCCCCTGTACCGACCACTTCGTGTCTTCCACCCCAAAATTTTGCTTCTCTTTCTCCACATTACCGTACACTCTCCTCCTCCTCCTCCTCCCTCTCTCTCTCTTTCTTTTTCACTTTCAACCTTTTCTCTCATATCCCAAAACTCGGCCACATCCAAATAGTATCCGAAGCTATGAACTCCGATCAGTTAGTTCATAGAACCCACCACACCCACACCCACAATGAAGACCTACAAGACACCCCCATCCTCGAATCAACCCCGCAAAACAAGCCTCGTAACCTCTCCATGAACCCAATCCGCTACATGCTTCGCGAGCAGCGCTTCCTCTTCGTCCTCATCGGTATTGCCATCGCCACCCTCTTCTTCACCGCCTTCCCCTTATCAAACCCAGAGCTAGCATCCTCCTCGCTATCTTCCCCGCTCCTCCATGACCCGACCCGAGACTCGAGTTTCTCGTCCGGGTCGTCTGTCGCGCCGACCCGGCGGGTTCTGTTGGAGGGTCTCGAGTCGATGAATGTGGGCGGGAAAGTGCCGCTGGGGTTGAAATCGAAGAGCCAGAGGATTGTGGTGACTGGTGGGGCTGGGTTCGTTGGGAGCCACCTTGTGGACCGTTTGATTGCGAGAGGGGACAGTGTGATCGTCATTGATAATTTCTTTACGGGTCGGAAAGAGAACCTGGCGCACCATTTCGGAAACCCCAAGTTTGAGCTCATCAGACACGACGTCGTTGAGCCGATTCTGTTGGAGGTTGACCAAATCTACCACTTGGCCTGCCCTGCCTCTCCTGTGCATTACAAGTTTAATCCGACGAACGTGGTGGGCACACTGAACATGCTTGGACTAGCCAAAAGGGTGGGTGCACGCTTCTTGCTCACAAGCACCAGTGAGGTCTACGGTGACCCCCTGCAGCATCCCCAGGTTGAGACCTACTGGGGCAATGTCAACCCCATCGGTGTAAGGAGTTGTTATGATGAGGGAAAGCGCACAGCAGAGACATTGAGCATGGACTATCATAGAGGCCTTGGCATTGAGGTGAGAATTGCCAGAATTTTCAATACTTACGGACCACGAATGTGCATTGATGATGGCCGTGTTGTTAGCAATTTTGTAGCTCAGGCATTAAGGAAGGAGCCATTAACAGTTTACGGTGATGGCAAGCAAACCAGAAGTTTCCAATACGTTTCTGACTTGGTGGAGGGACTAATGCGGCTGATGGAAGGGAATCATGTAGGACCTTTCAATCTTGGAAATCCTGGTGAATTCACCATGCTAGAACTTGCTCAGGTTGTACAAGACACCATAGACCCCAATGCAAAGATAGAGTTCAGGCCAAACACAGAAGATGACCCCCATAAGAGGAAGCCAGACATTTCAAAGGCAAAAGAGCTTCTCGGATGGGAGCCTACTGTGTCTCTCAGAAAGGGACTTCCTCTCATGGTCACTGACTTTAGACAGCGCATATTTGGCGACGCCAAGGACAACATTGCAGCTGAGGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009987 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

504

Amino Acids

55.96

Weight (kDa)

7.06

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	191 - 449	2.9e-06	RmlD substrate binding domain
Epimerase	PF01370	192 - 420	1.8e-42	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	193 - 339	2.4e-10	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	194 - 481	2.6e-50	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47650 AT2G47650 AT3G62830 AT3G62830
fragaria_vesca	FvH4_2g25720 FvH4_2g25720 FvH4_2g25720 FvH4_4g18410
malus_domestica	MD00G1128000.v1.1 MD03G1288200.v1.1 MD11G1309900.v1.1 MD16G1167000.v1.1
prunus_persica	Prupe.1G134000_v2.0.a1 Prupe.8G261400_v2.0.a1 Prupe.8G261400_v2.0.a1
pyrus_communis	pycom16g14100
rosa_chinensis	RchiOBHm_Chr4g0422861 RchiOBHm_Chr6g0294001 RchiOBHm_Chr6g0294011
rosa_laevigata	RLG00000007599 RLG00000011908
rosa_multiflora	Rmu_co8291503.1_g000001 Rmu_sc0000830.1_g000041 Rmu_sc0002321.1_g000009 Rmu_sc0003941.1_g000011 Rmu_sc0004849.1_g000008 Rmu_sc0005126.1_g000004 Rmu_sc0007876.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364720 Rroxscaffold_7G00173730
rosa_rugosa	Rorug04G0181900 Rorug06G0240000
rosa_samantha	Rh4AG242300 Rh4BG245900 Rh4CG256200 Rh4DG240900 Rh6AG353100 Rh6BG360000 Rh6CG367300 Rh6DG353700 Rh6DG353800
rosa_wichuraiana	Rw4G020870 Rw6G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	738
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccBSI	CCGCTC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	903
AccII	CGCG	2 cut(s)	324, 485
AciI	CCGC	8 cut(s)	272, 310, 381, 431, 496, 534, 545, 1219
AcoI	YGGCCR	2 cut(s)	157, 1099
AcsI	RAATTY	3 cut(s)	49, 1059, 1271
AcyI	GRCGYC	2 cut(s)	735, 1482
AdeI	CACNNNGTG	2 cut(s)	33, 616
AfaI	GTAC	3 cut(s)	21, 79, 1302
AfeI	AGCGCT	1 cut(s)	332
AfiI	CCNNNNNNNGG	3 cut(s)	155, 616, 1368
AgsI	TTSAA	5 cut(s)	130, 556, 1066, 1252, 1386
AhdI	GACNNNNNGTC	1 cut(s)	734
AjnI	CCWGG	3 cut(s)	687, 927, 1264
AleI	CACNNNNGTG	1 cut(s)	1084
AluBI	AGCT	7 cut(s)	182, 406, 721, 1124, 1399, 1502, 1511
AluI	AGCT	7 cut(s)	182, 406, 721, 1124, 1399, 1502, 1511
Alw21I	GWGCWC	2 cut(s)	723, 874
Alw26I	GTCTC	5 cut(s)	447, 518, 929, 998, 1428
Alw44I	GTGCAC	1 cut(s)	870
Ama87I	CYCGRG	3 cut(s)	450, 457, 515
Aor51HI	AGCGCT	1 cut(s)	332
AoxI	GGCC	5 cut(s)	157, 780, 1030, 1099, 1340
ApaLI	GTGCAC	1 cut(s)	870
ApeKI	GCWGC	4 cut(s)	328, 919, 1499, 1508
ApoI	RAATTY	3 cut(s)	49, 1059, 1271
AspLEI	GCGC	5 cut(s)	333, 487, 694, 996, 1470
AspS9I	GGNCC	3 cut(s)	619, 1076, 1244
AsuC2I	CCSGG	2 cut(s)	472, 493
AsuHPI	GGTGA	7 cut(s)	370, 592, 920, 1057, 1172, 1267, 1280
AsuNHI	GCTAGC	1 cut(s)	406
AvaI	CYCGRG	3 cut(s)	450, 457, 515
AvaII	GGWCC	3 cut(s)	619, 1076, 1244
BaeGI	GKGCMC	2 cut(s)	836, 874
BanII	GRGCYC	1 cut(s)	723
BbsI	GAAGAC	2 cut(s)	29, 243
Bbv12I	GWGCWC	2 cut(s)	723, 874
BbvCI	CCTCAGC	1 cut(s)	1503
BbvI	GCAGC	3 cut(s)	340, 931, 1511
BccI	CCATC	7 cut(s)	263, 368, 968, 1091, 1157, 1219, 1401
BceAI	ACGGC	1 cut(s)	1086
BcgI	CGANNNNNNTGC	2 cut(s)	399, 433
BciT130I	CCWGG	3 cut(s)	689, 929, 1266
BciVI	GTATCC	1 cut(s)	184
BcnI	CCSGG	2 cut(s)	472, 493
BcoDI	GTCTC	5 cut(s)	447, 518, 929, 998, 1428
BfaI	CTAG	3 cut(s)	407, 854, 1283
BfmI	CTRYAG	1 cut(s)	917
BfoI	RGCGCY	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	184
BglI	GCCNNNNNGGC	1 cut(s)	493
BisI	GCNGC	6 cut(s)	329, 545, 920, 1220, 1500, 1509
BlsI	GCNGC	6 cut(s)	330, 546, 921, 1221, 1501, 1510
Bme1390I	CCNGG	5 cut(s)	472, 493, 689, 929, 1266
Bme18I	GGWCC	3 cut(s)	619, 1076, 1244
BmeRI	GACNNNNNGTC	1 cut(s)	734
BmeT110I	CYCGRG	3 cut(s)	450, 457, 515
BmgT120I	GGNCC	3 cut(s)	619, 1076, 1244
BmiI	GGNNCC	3 cut(s)	608, 1143, 1413
BmrFI	CCNGG	5 cut(s)	472, 493, 689, 929, 1266
BmrI	ACTGGG	1 cut(s)	952
BmsI	GCATC	2 cut(s)	419, 931
BmtI	GCTAGC	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	952
BpiI	GAAGAC	2 cut(s)	29, 243
Bpu10I	CCTNAGC	3 cut(s)	1125, 1293, 1503
BpuMI	CCSGG	2 cut(s)	472, 493
BsaHI	GRCGYC	2 cut(s)	735, 1482
BsaI	GGTCTC	2 cut(s)	518, 929
BsaJI	CCNNGG	3 cut(s)	927, 1033, 1485
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 616, 1368
Bse1I	ACTGG	3 cut(s)	589, 894, 947
Bse3DI	GCAATG	2 cut(s)	955, 1494
BseBI	CCWGG	3 cut(s)	689, 929, 1266
BseDI	CCNNGG	3 cut(s)	927, 1033, 1485
BseGI	GGATG	5 cut(s)	162, 255, 410, 922, 1412
BseLI	CCNNNNNNNGG	3 cut(s)	155, 616, 1368
BseMI	GCAATG	2 cut(s)	955, 1494
BseMII	CTCAG	4 cut(s)	1139, 1307, 1441, 1494
BseNI	ACTGG	3 cut(s)	589, 894, 947
BseRI	GAGGAG	7 cut(s)	76, 79, 82, 85, 88, 406, 425
BseSI	GKGCMC	2 cut(s)	836, 874
BseXI	GCAGC	3 cut(s)	340, 931, 1511
BseYI	CCCAGC	2 cut(s)	547, 593
Bsh1236I	CGCG	2 cut(s)	324, 485
BshFI	GGCC	5 cut(s)	159, 782, 1032, 1101, 1342
BsiHKAI	GWGCWC	2 cut(s)	723, 874
BsiHKCI	CYCGRG	3 cut(s)	450, 457, 515
BsiSI	CCGG	2 cut(s)	471, 493
BslFI	GGGAC	3 cut(s)	653, 1224, 1449
BslI	CCNNNNNNNGG	3 cut(s)	155, 616, 1368
BsmAI	GTCTC	5 cut(s)	447, 518, 929, 998, 1428
BsmFI	GGGAC	3 cut(s)	653, 1224, 1449
BsnI	GGCC	5 cut(s)	159, 782, 1032, 1101, 1342
Bso31I	GGTCTC	2 cut(s)	518, 929
BsoBI	CYCGRG	3 cut(s)	450, 457, 515
Bsp1286I	GDGCHC	3 cut(s)	723, 836, 874
Bsp1407I	TGTACA	1 cut(s)	1300
Bsp143I	GATC	2 cut(s)	193, 648
Bsp68I	TCGCGA	1 cut(s)	324
BspACI	CCGC	8 cut(s)	272, 310, 381, 431, 496, 534, 545, 1219
BspANI	GGCC	5 cut(s)	159, 782, 1032, 1101, 1342
BspCNI	CTCAG	4 cut(s)	1138, 1306, 1440, 1495
BspFNI	CGCG	2 cut(s)	324, 485
BspLI	GGNNCC	3 cut(s)	608, 1143, 1413
BspMAI	CTGCAG	1 cut(s)	921
BspOI	GCTAGC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	557
BspTNI	GGTCTC	2 cut(s)	518, 929
BsrBI	CCGCTC	1 cut(s)	433
BsrDI	GCAATG	2 cut(s)	955, 1494
BsrGI	TGTACA	1 cut(s)	1300
BsrI	ACTGG	3 cut(s)	589, 894, 947
BssECI	CCNNGG	3 cut(s)	927, 1033, 1485
BssMI	GATC	2 cut(s)	193, 648
BssNI	GRCGYC	2 cut(s)	735, 1482
BssT1I	CCWWGG	2 cut(s)	1033, 1485
Bst2UI	CCWGG	3 cut(s)	689, 929, 1266
Bst4CI	ACNGT	7 cut(s)	77, 623, 644, 908, 1153, 1160, 1420
Bst6I	CTCTTC	3 cut(s)	344, 377, 557
BstACI	GRCGYC	2 cut(s)	735, 1482
BstAUI	TGTACA	1 cut(s)	1300
BstC8I	GCNNGC	5 cut(s)	326, 408, 784, 874, 1169
BstDEI	CTNAG	4 cut(s)	1125, 1293, 1427, 1503
BstEII	GGTNACC	1 cut(s)	908
BstF5I	GGATG	5 cut(s)	162, 255, 410, 922, 1412
BstFNI	CGCG	2 cut(s)	324, 485
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	5 cut(s)	333, 487, 694, 996, 1470
BstKTI	GATC	2 cut(s)	196, 651
BstMAI	GTCTC	5 cut(s)	447, 518, 929, 998, 1428
BstMBI	GATC	2 cut(s)	193, 648
BstMWI	GCNNNNNNNGC	8 cut(s)	280, 325, 330, 493, 788, 1476, 1505, 1508
BstNI	CCWGG	3 cut(s)	689, 929, 1266
BstNSI	RCATGY	2 cut(s)	319, 847
BstPI	GGTNACC	1 cut(s)	908
BstSCI	CCNGG	5 cut(s)	470, 491, 687, 927, 1264
BstSFI	CTRYAG	1 cut(s)	917
BstSLI	GKGCMC	2 cut(s)	836, 874
BstUI	CGCG	2 cut(s)	324, 485
BstV1I	GCAGC	3 cut(s)	340, 931, 1511
BstV2I	GAAGAC	2 cut(s)	29, 243
BstXI	CCANNNNNNTGG	1 cut(s)	865
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	5 cut(s)	159, 782, 1032, 1101, 1342
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	5 cut(s)	162, 255, 410, 922, 1412
BtsIMutI	CAGTG	4 cut(s)	649, 836, 901, 1452
BtuMI	TCGCGA	1 cut(s)	324
Cac8I	GCNNGC	5 cut(s)	326, 408, 784, 874, 1169
CfoI	GCGC	5 cut(s)	333, 487, 694, 996, 1470
Cfr13I	GGNCC	3 cut(s)	619, 1076, 1244
CseI	GACGC	1 cut(s)	1490
Csp6I	GTAC	3 cut(s)	20, 78, 1301
CviAII	CATG	9 cut(s)	5, 298, 316, 440, 844, 1015, 1238, 1279, 1447
CviQI	GTAC	3 cut(s)	20, 78, 1301
DdeI	CTNAG	4 cut(s)	1125, 1293, 1427, 1503
DpnI	GATC	2 cut(s)	195, 650
DpnII	GATC	2 cut(s)	193, 648
DraIII	CACNNNGTG	2 cut(s)	33, 616
DriI	GACNNNNNGTC	1 cut(s)	734
EaeI	YGGCCR	2 cut(s)	157, 1099
Eam1104I	CTCTTC	3 cut(s)	344, 377, 557
Eam1105I	GACNNNNNGTC	1 cut(s)	734
EarI	CTCTTC	3 cut(s)	344, 377, 557
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	2 cut(s)	1033, 1485
Eco147I	AGGCCT	1 cut(s)	1032
Eco24I	GRGCYC	1 cut(s)	723
Eco31I	GGTCTC	2 cut(s)	518, 929
Eco47I	GGWCC	3 cut(s)	619, 1076, 1244
Eco47III	AGCGCT	1 cut(s)	332
Eco53kI	GAGCTC	1 cut(s)	721
Eco88I	CYCGRG	3 cut(s)	450, 457, 515
Eco91I	GGTNACC	1 cut(s)	908
EcoICRI	GAGCTC	1 cut(s)	721
EcoO109I	RGGNCCY	1 cut(s)	1244
EcoO65I	GGTNACC	1 cut(s)	908
EcoRI	GAATTC	1 cut(s)	1271
EcoRII	CCWGG	3 cut(s)	687, 927, 1264
EcoT14I	CCWWGG	2 cut(s)	1033, 1485
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	2 cut(s)	1033, 1485
FaeI	CATG	9 cut(s)	8, 301, 319, 443, 847, 1018, 1241, 1282, 1450
FaqI	GGGAC	3 cut(s)	653, 1224, 1449
FatI	CATG	9 cut(s)	4, 297, 315, 439, 843, 1014, 1237, 1278, 1446
FauI	CCCGC	4 cut(s)	279, 438, 489, 527
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	6 cut(s)	329, 545, 920, 1220, 1500, 1509
FokI	GGATG	5 cut(s)	149, 242, 397, 909, 1419
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	6 cut(s)	329, 545, 920, 1220, 1500, 1509
FspBI	CTAG	3 cut(s)	407, 854, 1283
GlaI	GCGC	5 cut(s)	332, 486, 693, 995, 1469
GluI	GCNGC	6 cut(s)	329, 545, 920, 1220, 1500, 1509
GsaI	CCCAGC	2 cut(s)	551, 597
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	5 cut(s)	159, 782, 1032, 1101, 1342
HapII	CCGG	2 cut(s)	471, 493
HgaI	GACGC	1 cut(s)	1490
HhaI	GCGC	5 cut(s)	333, 487, 694, 996, 1470
Hin1I	GRCGYC	2 cut(s)	735, 1482
Hin1II	CATG	9 cut(s)	8, 301, 319, 443, 847, 1018, 1241, 1282, 1450
Hin6I	GCGC	5 cut(s)	331, 485, 692, 994, 1468
HinP1I	GCGC	5 cut(s)	331, 485, 692, 994, 1468
HincII	GTYRAC	2 cut(s)	763, 955
HindII	GTYRAC	2 cut(s)	763, 955
HinfI	GANTC	5 cut(s)	263, 455, 518, 748, 1234
HpaII	CCGG	2 cut(s)	471, 493
HphI	GGTGA	7 cut(s)	370, 592, 920, 1057, 1172, 1267, 1280
Hpy166II	GTNNAC	7 cut(s)	80, 619, 763, 872, 904, 955, 1156
Hpy188I	TCNGA	9 cut(s)	178, 193, 678, 704, 728, 819, 1198, 1406, 1430
Hpy188III	TCNNGA	2 cut(s)	323, 515
Hpy8I	GTNNAC	7 cut(s)	80, 619, 763, 872, 904, 955, 1156
Hpy99I	CGWCG	4 cut(s)	737, 740, 823, 1484
HpyAV	CCTTC	3 cut(s)	394, 1132, 1223
HpyCH4III	ACNGT	7 cut(s)	77, 623, 644, 908, 1153, 1160, 1420
HpyCH4IV	ACGT	3 cut(s)	735, 825, 1191
HpyCH4V	TGCA	7 cut(s)	4, 802, 872, 919, 1089, 1325, 1499
HpyF10VI	GCNNNNNNNGC	8 cut(s)	280, 325, 330, 493, 788, 1476, 1505, 1508
HpyF3I	CTNAG	4 cut(s)	1125, 1293, 1427, 1503
HpySE526I	ACGT	3 cut(s)	735, 825, 1191
Hsp92I	GRCGYC	2 cut(s)	735, 1482
Hsp92II	CATG	9 cut(s)	8, 301, 319, 443, 847, 1018, 1241, 1282, 1450
HspAI	GCGC	5 cut(s)	331, 485, 692, 994, 1468
Kzo9I	GATC	2 cut(s)	193, 648
LguI	GCTCTTC	1 cut(s)	557
LmnI	GCTCC	4 cut(s)	438, 606, 1141, 1411
Lsp1109I	GCAGC	3 cut(s)	340, 931, 1511
LweI	GCATC	2 cut(s)	419, 931
MaeI	CTAG	3 cut(s)	407, 854, 1283
MaeII	ACGT	3 cut(s)	735, 825, 1191
MaeIII	GTNAC	4 cut(s)	287, 580, 908, 1450
MalI	GATC	2 cut(s)	195, 650
MbiI	CCGCTC	1 cut(s)	433
MboI	GATC	2 cut(s)	193, 648
MboII	GAAGA	8 cut(s)	29, 248, 331, 364, 367, 417, 574, 1364
MhlI	GDGCHC	3 cut(s)	723, 836, 874
MluCI	AATT	6 cut(s)	49, 661, 1050, 1059, 1114, 1271
MlyI	GAGTC	2 cut(s)	449, 527
MmeI	TCCRAC	4 cut(s)	486, 656, 735, 842
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	813, 1133, 1148, 1513
MslI	CAYNNNNRTG	2 cut(s)	1043, 1084
MspA1I	CMGCKG	2 cut(s)	547, 1502
MspI	CCGG	2 cut(s)	471, 493
MspR9I	CCNGG	5 cut(s)	472, 493, 689, 929, 1266
MvaI	CCWGG	3 cut(s)	689, 929, 1266
MvnI	CGCG	2 cut(s)	324, 485
MwoI	GCNNNNNNNGC	8 cut(s)	280, 325, 330, 493, 788, 1476, 1505, 1508
NciI	CCSGG	2 cut(s)	472, 493
NdeII	GATC	2 cut(s)	193, 648
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	9 cut(s)	8, 301, 319, 443, 847, 1018, 1241, 1282, 1450
NlaIV	GGNNCC	3 cut(s)	608, 1143, 1413
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	3 cut(s)	580, 908, 1450
NruI	TCGCGA	1 cut(s)	324
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	319, 847
OliI	CACNNNNGTG	1 cut(s)	1084
PaeR7I	CTCGAG	2 cut(s)	457, 515
PceI	AGGCCT	1 cut(s)	1032
PciSI	GCTCTTC	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	2 cut(s)	464, 473
PfeI	GAWTC	3 cut(s)	263, 748, 1234
PflMI	CCANNNNNTGG	1 cut(s)	616
PkrI	GCNGC	6 cut(s)	330, 546, 921, 1221, 1501, 1510
PleI	GAGTC	2 cut(s)	449, 526
PpsI	GAGTC	2 cut(s)	449, 526
PpuMI	RGGWCCY	1 cut(s)	1244
Psp124BI	GAGCTC	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	1244
Psp6I	CCWGG	3 cut(s)	687, 927, 1264
PspEI	GGTNACC	1 cut(s)	908
PspFI	CCCAGC	2 cut(s)	547, 593
PspGI	CCWGG	3 cut(s)	687, 927, 1264
PspN4I	GGNNCC	3 cut(s)	608, 1143, 1413
PspPI	GGNCC	3 cut(s)	619, 1076, 1244
PspPPI	RGGWCCY	1 cut(s)	1244
PspXI	VCTCGAGB	1 cut(s)	457
PstI	CTGCAG	1 cut(s)	921
PvuII	CAGCTG	1 cut(s)	1502
RruI	TCGCGA	1 cut(s)	324
RsaI	GTAC	3 cut(s)	21, 79, 1302
RsaNI	GTAC	3 cut(s)	20, 78, 1301
RseI	CAYNNNNRTG	2 cut(s)	1043, 1084
SacI	GAGCTC	1 cut(s)	723
SapI	GCTCTTC	1 cut(s)	557
SaqAI	TTAA	4 cut(s)	813, 1133, 1148, 1513
SatI	GCNGC	6 cut(s)	329, 545, 920, 1220, 1500, 1509
Sau3AI	GATC	2 cut(s)	193, 648
Sau96I	GGNCC	3 cut(s)	619, 1076, 1244
SchI	GAGTC	2 cut(s)	449, 527
ScrFI	CCNGG	5 cut(s)	472, 493, 689, 929, 1266
SduI	GDGCHC	3 cut(s)	723, 836, 874
SfaNI	GCATC	2 cut(s)	419, 931
SfcI	CTRYAG	1 cut(s)	917
Sfr274I	CTCGAG	2 cut(s)	457, 515
SinI	GGWCC	3 cut(s)	619, 1076, 1244
SlaI	CTCGAG	2 cut(s)	457, 515
SmiMI	CAYNNNNRTG	2 cut(s)	1043, 1084
SmlI	CTYRAG	2 cut(s)	457, 515
SmoI	CTYRAG	2 cut(s)	457, 515
Sse9I	AATT	6 cut(s)	49, 661, 1050, 1059, 1114, 1271
SseBI	AGGCCT	1 cut(s)	1032
SsiI	CCGC	8 cut(s)	272, 310, 381, 431, 496, 534, 545, 1219
SspMI	CTAG	3 cut(s)	407, 854, 1283
SstI	GAGCTC	1 cut(s)	723
StuI	AGGCCT	1 cut(s)	1032
StyD4I	CCNGG	5 cut(s)	470, 491, 687, 927, 1264
StyI	CCWWGG	2 cut(s)	1033, 1485
TaaI	ACNGT	7 cut(s)	77, 623, 644, 908, 1153, 1160, 1420
TaiI	ACGT	3 cut(s)	738, 828, 1194
TaqI	TCGA	5 cut(s)	261, 458, 516, 521, 560
TasI	AATT	6 cut(s)	49, 661, 1050, 1059, 1114, 1271
TatI	WGTACW	1 cut(s)	1300
TauI	GCSGC	2 cut(s)	547, 1222
TfiI	GAWTC	3 cut(s)	263, 748, 1234
Tru1I	TTAA	4 cut(s)	813, 1133, 1148, 1513
Tru9I	TTAA	4 cut(s)	813, 1133, 1148, 1513
TscAI	CASTG	4 cut(s)	649, 843, 901, 1459
TseFI	GTSAC	3 cut(s)	580, 908, 1450
TseI	GCWGC	4 cut(s)	328, 919, 1499, 1508
Tsp45I	GTSAC	3 cut(s)	580, 908, 1450
TspDTI	ATGAA	5 cut(s)	194, 200, 249, 314, 539
TspGWI	ACGGA	1 cut(s)	1089
TspRI	CASTG	4 cut(s)	649, 843, 901, 1459
Van91I	CCANNNNNTGG	1 cut(s)	616
VneI	GTGCAC	1 cut(s)	870
VpaK11BI	GGWCC	3 cut(s)	619, 1076, 1244
XapI	RAATTY	3 cut(s)	49, 1059, 1271
XceI	RCATGY	2 cut(s)	319, 847
XhoI	CTCGAG	2 cut(s)	457, 515
XmiI	GTMKAC	1 cut(s)	903
XspI	CTAG	3 cut(s)	407, 854, 1283
ZraI	GACGTC	1 cut(s)	736
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.