Rh6DG353800

UDP-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002167
Physical Location & Seq
Forward (+)
55307038 .. 55309143
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG353800.1

Sequence Viewer

Length: 675 bp
ATGCTGGGGCTGGCGAAGCGGGTCGGAGCTCGGTTCTTGTTGACCAGCACCAGCGAGGTCTACGGCGATCCTCTGCAGCACCCTCAGGTCGAGACCTACTGGGGAAACGTCAATCCCATCGGTGTCCGAAGTTGCTACGATGAGGGAAAGCGTACGGCTGAGACATTGACTATGGACTACCATAGAGGGGCAGGTGTCGAGGTTAGGATTGCTAGGATTTTCAACACATACGGCCCGAGAATGTGCATAGACGACGGTCGTGTTGTTAGTAACTTTGTTGCTCAGGCATTGAGGAAGGAGCCTATGACTGTTTACGGTGATGGAAAGCAGACAAGAAGTTTCCAATACGTTTCTGATCTGGTGGATGGTCTGATGCGGCTGATGGAAGGCGAGCATGTTGGACCTTTCAATCTCGGGAACCCCGGTGAATTCACCATGCTTGAACTTGCAAAGGTGGTCCAAGAAACAATTGACAAAGATGCAAAGATTGAGTTCAGGCCAAACACTGAGGATGACCCGCACAAGAGGAAGCCTGATATCACAAAGGCCAAAGACCTTCTTGGTTGGCAACCAAAGGTGTCTCTCCGCAAGGGACTCCCACTCATGGTGTCAGACTTCAGCAAACGTATCTTCGGTGACCACAAGGAAGCTGCTGGTGCCACCACCACCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
GDP_Man_Dehyd

Protein Analysis

224

Amino Acids

25.11

Weight (kDa)

7.76

Isoelectric Point (pI)

25.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 2 - 139 2.2e-25 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 3 - 200 6.5e-33 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 656
AccI GTMKAC 1 cut(s) 60
AciI CCGC 4 cut(s) 19, 376, 518, 586
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 601
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 187, 604
AgsI TTSAA 3 cut(s) 223, 409, 443
AluBI AGCT 2 cut(s) 29, 650
AluI AGCT 2 cut(s) 29, 650
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 3 cut(s) 86, 155, 585
AlwI GGATC 1 cut(s) 62
Ama87I CYCGRG 2 cut(s) 235, 413
AoxI GGCC 3 cut(s) 232, 497, 546
ApeKI GCWGC 2 cut(s) 76, 650
ApoI RAATTY 1 cut(s) 428
AspS9I GGNCC 3 cut(s) 233, 401, 457
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 4 cut(s) 329, 424, 437, 647
AvaI CYCGRG 2 cut(s) 235, 413
AvaII GGWCC 2 cut(s) 401, 457
AxyI CCTNAGG 1 cut(s) 84
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 2 cut(s) 88, 637
BccI CCATC 4 cut(s) 125, 314, 359, 376
BceAI ACGGC 3 cut(s) 79, 171, 247
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 3 cut(s) 86, 155, 585
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 182
BisI GCNGC 3 cut(s) 77, 377, 651
BlsI GCNGC 3 cut(s) 78, 378, 652
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 2 cut(s) 401, 457
BmeT110I CYCGRG 2 cut(s) 235, 413
BmgT120I GGNCC 3 cut(s) 233, 401, 457
BmiI GGNNCC 3 cut(s) 300, 419, 658
BmrFI CCNGG 1 cut(s) 423
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 363, 469
BmuI ACTGGG 1 cut(s) 109
BoxI GACNNNNGTC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 421
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 604
Bse1I ACTGG 1 cut(s) 104
Bse21I CCTNAGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 2 cut(s) 370, 517
BseLI CCNNNNNNNGG 2 cut(s) 187, 604
BseMII CTCAG 4 cut(s) 98, 150, 296, 498
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 88, 637
BseYI CCCAGC 1 cut(s) 4
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 3 cut(s) 234, 499, 548
BshNI GGYRCC 1 cut(s) 656
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 31
BsiHKCI CYCGRG 2 cut(s) 235, 413
BsiSI CCGG 1 cut(s) 423
BsiWI CGTACG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 2 cut(s) 187, 604
BsmAI GTCTC 3 cut(s) 86, 155, 585
BsmFI GGGAC 1 cut(s) 606
BsnI GGCC 3 cut(s) 234, 499, 548
Bso31I GGTCTC 1 cut(s) 86
BsoBI CYCGRG 2 cut(s) 235, 413
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 67, 355
BspACI CCGC 4 cut(s) 19, 376, 518, 586
BspANI GGCC 3 cut(s) 234, 499, 548
BspCNI CTCAG 4 cut(s) 97, 151, 295, 499
BspLI GGNNCC 3 cut(s) 300, 419, 658
BspMAI CTGCAG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 2 cut(s) 67, 355
Bst4CI ACNGT 3 cut(s) 257, 310, 317
BstC8I GCNNGC 2 cut(s) 12, 392
BstDEI CTNAG 4 cut(s) 84, 159, 282, 507
BstEII GGTNACC 1 cut(s) 635
BstF5I GGATG 2 cut(s) 370, 517
BstKTI GATC 2 cut(s) 70, 358
BstMAI GTCTC 3 cut(s) 86, 155, 585
BstMBI GATC 2 cut(s) 67, 355
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 16, 656
BstNSI RCATGY 1 cut(s) 398
BstPAI GACNNNNGTC 1 cut(s) 255
BstPI GGTNACC 1 cut(s) 635
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 74
BstV1I GCAGC 2 cut(s) 88, 637
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 3 cut(s) 234, 499, 548
BtsCI GGATG 2 cut(s) 370, 517
BtsIMutI CAGTG 1 cut(s) 504
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 12, 392
Cfr13I GGNCC 3 cut(s) 233, 401, 457
Csp6I GTAC 1 cut(s) 153
CviAII CATG 4 cut(s) 395, 436, 604, 670
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 4 cut(s) 84, 159, 282, 507
DpnI GATC 2 cut(s) 69, 357
DpnII GATC 2 cut(s) 67, 355
Ecl136II GAGCTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 538
Eco47I GGWCC 2 cut(s) 401, 457
Eco53kI GAGCTC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 601
Eco81I CCTNAGG 1 cut(s) 84
Eco88I CYCGRG 2 cut(s) 235, 413
Eco91I GGTNACC 1 cut(s) 635
EcoICRI GAGCTC 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 428
EcoRV GATATC 1 cut(s) 538
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 4 cut(s) 398, 439, 607, 673
FaiI YATR 9 cut(s) 173, 183, 229, 248, 305, 396, 437, 605, 671
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FaqI GGGAC 1 cut(s) 606
FatI CATG 4 cut(s) 394, 435, 603, 669
FauI CCCGC 2 cut(s) 12, 525
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 77, 377, 651
FokI GGATG 2 cut(s) 377, 524
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 77, 377, 651
FspBI CTAG 1 cut(s) 213
GluI GCNGC 3 cut(s) 77, 377, 651
GsaI CCCAGC 1 cut(s) 8
HaeIII GGCC 3 cut(s) 234, 499, 548
HapII CCGG 1 cut(s) 423
Hin1II CATG 4 cut(s) 398, 439, 607, 673
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 1 cut(s) 594
HpaII CCGG 1 cut(s) 423
HphI GGTGA 4 cut(s) 329, 424, 437, 647
Hpy166II GTNNAC 3 cut(s) 42, 61, 313
Hpy188I TCNGA 5 cut(s) 26, 128, 355, 372, 613
Hpy188III TCNNGA 2 cut(s) 91, 415
Hpy8I GTNNAC 3 cut(s) 42, 61, 313
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 3 cut(s) 289, 380, 566
HpyCH4III ACNGT 3 cut(s) 257, 310, 317
HpyCH4IV ACGT 3 cut(s) 108, 348, 625
HpyCH4V TGCA 4 cut(s) 76, 246, 449, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 656
HpyF3I CTNAG 4 cut(s) 84, 159, 282, 507
HpySE526I ACGT 3 cut(s) 108, 348, 625
Hsp92II CATG 4 cut(s) 398, 439, 607, 673
Kzo9I GATC 2 cut(s) 67, 355
LmnI GCTCC 2 cut(s) 26, 298
Lsp1109I GCAGC 2 cut(s) 88, 637
LweI GCATC 2 cut(s) 363, 469
MaeI CTAG 1 cut(s) 213
MaeII ACGT 3 cut(s) 108, 348, 625
MaeIII GTNAC 2 cut(s) 269, 635
MalI GATC 2 cut(s) 69, 357
MboI GATC 2 cut(s) 67, 355
MboII GAAGA 1 cut(s) 622
MfeI CAATTG 1 cut(s) 468
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 428, 468
MlyI GAGTC 1 cut(s) 588
MmeI TCCRAC 2 cut(s) 4, 379
MnlI CCTC 9 cut(s) 49, 81, 93, 136, 179, 193, 285, 502, 519
MslI CAYNNNNRTG 1 cut(s) 668
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 468
MwoI GCNNNNNNNGC 2 cut(s) 16, 656
NciI CCSGG 1 cut(s) 423
NdeII GATC 2 cut(s) 67, 355
NlaIII CATG 4 cut(s) 398, 439, 607, 673
NlaIV GGNNCC 3 cut(s) 300, 419, 658
NmuCI GTSAC 1 cut(s) 635
NspI RCATGY 1 cut(s) 398
PaqCI CACCTGC 1 cut(s) 182
Pfl23II CGTACG 1 cut(s) 152
PkrI GCNGC 3 cut(s) 78, 378, 652
PleI GAGTC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 588
PshAI GACNNNNGTC 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 31
PspEI GGTNACC 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 4
PspLI CGTACG 1 cut(s) 152
PspN4I GGNNCC 3 cut(s) 300, 419, 658
PspPI GGNCC 3 cut(s) 233, 401, 457
PstI CTGCAG 1 cut(s) 78
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 668
SacI GAGCTC 1 cut(s) 31
SatI GCNGC 3 cut(s) 77, 377, 651
Sau3AI GATC 2 cut(s) 67, 355
Sau96I GGNCC 3 cut(s) 233, 401, 457
SchI GAGTC 1 cut(s) 588
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 1 cut(s) 31
SfaNI GCATC 2 cut(s) 363, 469
SfcI CTRYAG 1 cut(s) 74
SinI GGWCC 2 cut(s) 401, 457
SmiMI CAYNNNNRTG 1 cut(s) 668
Sse9I AATT 2 cut(s) 428, 468
SsiI CCGC 4 cut(s) 19, 376, 518, 586
SspMI CTAG 1 cut(s) 213
SstI GAGCTC 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 3 cut(s) 257, 310, 317
TaiI ACGT 3 cut(s) 111, 351, 628
TaqI TCGA 2 cut(s) 90, 198
TasI AATT 2 cut(s) 428, 468
TauI GCSGC 1 cut(s) 379
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 2 cut(s) 76, 650
Tsp45I GTSAC 1 cut(s) 635
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 401, 457
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.