Rorug06G0240000

UDP-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002167
Physical Location & Seq
Reverse (-)
38246187 .. 38250259
4073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0240000.1

Sequence Viewer

Length: 540 bp
ATGGCAGCTGAAAATGCCAAGAGAGGGATAAAGAGGTTCTTAGAACCATCTACCGGTGAGAGAATTGATCAAGAAAAATCTGAATATGGTCATGTCAGATCAAAGAGATTGAAAAGAATGTTTCATCCAGAAATTGTTGGAGGATCTAATGAATGTCGGAATGAAATGCAATTGAAGGGTGATGATGAAAACGCTGCTGAAGGGATGGCAGCTAAGGATGCCAAGAAAGGAAAAAAAAGATTGTCAAAAGAATCCACTACTAAGAGAGTTAATCAAGGAAAAACTGAACGTAGTTATGTTAGATCAAAGAGATTGAAAAGAATGCTTCATCCAGAAATTGCTCAAGGATCTATTGAATGTCAGAATGAAATGCAAGTAGAAAATGATGATCAAAAAGCTGCTCAAGGAATAACAACTAAGGATGCCAACAGAGGAAAGAAAAGGTTGTTAAAACGACCTATTACTAAGAGAATTAATGAAGGAAAAACTGAATGCAGTCATGTTAAATCAAAGAGATTGAAAAGAATGTTTTGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
GDP_Man_Dehyd

Protein Analysis

179

Amino Acids

20.54

Weight (kDa)

10.09

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 151, 355
AcuI CTGAAG 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 24, 53
AgeI ACCGGT 1 cut(s) 53
AgsI TTSAA 5 cut(s) 112, 175, 316, 356, 520
AluBI AGCT 3 cut(s) 8, 212, 398
AluI AGCT 3 cut(s) 8, 212, 398
AlwI GGATC 2 cut(s) 151, 355
ApeKI GCWGC 4 cut(s) 5, 194, 209, 398
AseI ATTAAT 1 cut(s) 474
AsiGI ACCGGT 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 68, 191
BbvI GCAGC 4 cut(s) 17, 181, 221, 385
BccI CCATC 2 cut(s) 55, 199
BclI TGATCA 2 cut(s) 67, 388
BisI GCNGC 4 cut(s) 6, 195, 210, 399
BlsI GCNGC 4 cut(s) 7, 196, 211, 400
BmsI GCATC 2 cut(s) 208, 412
Bpu10I CCTNAGC 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 327, 387
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 53
Bse118I RCCGGY 1 cut(s) 53
BseGI GGATG 5 cut(s) 124, 210, 223, 328, 427
BseLI CCNNNNNNNGG 2 cut(s) 24, 53
BseXI GCAGC 4 cut(s) 17, 181, 221, 385
BshTI ACCGGT 1 cut(s) 53
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 24, 53
BsmI GAATGC 2 cut(s) 327, 497
Bsp143I GATC 6 cut(s) 67, 98, 143, 302, 347, 388
BspPI GGATC 2 cut(s) 151, 355
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssMI GATC 6 cut(s) 67, 98, 143, 302, 347, 388
BstDEI CTNAG 5 cut(s) 40, 213, 261, 417, 465
BstF5I GGATG 5 cut(s) 124, 210, 223, 328, 427
BstKTI GATC 6 cut(s) 70, 101, 146, 305, 350, 391
BstMBI GATC 6 cut(s) 67, 98, 143, 302, 347, 388
BstMWI GCNNNNNNNGC 2 cut(s) 14, 218
BstV1I GCAGC 4 cut(s) 17, 181, 221, 385
BstX2I RGATCY 2 cut(s) 143, 347
BstYI RGATCY 2 cut(s) 143, 347
BtsCI GGATG 5 cut(s) 124, 210, 223, 328, 427
Cfr10I RCCGGY 1 cut(s) 53
CspAI ACCGGT 1 cut(s) 53
CviAII CATG 2 cut(s) 92, 500
CviJI RGCY 3 cut(s) 8, 212, 398
CviKI_1 RGCY 3 cut(s) 8, 212, 398
DdeI CTNAG 5 cut(s) 40, 213, 261, 417, 465
DpnI GATC 6 cut(s) 69, 100, 145, 304, 349, 390
DpnII GATC 6 cut(s) 67, 98, 143, 302, 347, 388
Eco57I CTGAAG 1 cut(s) 219
FaeI CATG 2 cut(s) 95, 503
FaiI YATR 4 cut(s) 87, 93, 297, 501
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 2 cut(s) 91, 499
FbaI TGATCA 2 cut(s) 67, 388
Fnu4HI GCNGC 4 cut(s) 6, 195, 210, 399
FokI GGATG 5 cut(s) 111, 217, 230, 315, 434
Fsp4HI GCNGC 4 cut(s) 6, 195, 210, 399
GluI GCNGC 4 cut(s) 6, 195, 210, 399
HapII CCGG 1 cut(s) 54
Hin1II CATG 2 cut(s) 95, 503
HinfI GANTC 1 cut(s) 251
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 68, 191
Hpy188I TCNGA 4 cut(s) 82, 98, 159, 363
Hpy188III TCNNGA 3 cut(s) 71, 128, 332
HpyAV CCTTC 3 cut(s) 169, 194, 473
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 169, 373, 495, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 218
HpyF3I CTNAG 5 cut(s) 40, 213, 261, 417, 465
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 2 cut(s) 95, 503
Ksp22I TGATCA 2 cut(s) 67, 388
Kzo9I GATC 6 cut(s) 67, 98, 143, 302, 347, 388
LpnPI CCDG 3 cut(s) 67, 141, 345
Lsp1109I GCAGC 4 cut(s) 17, 181, 221, 385
LweI GCATC 2 cut(s) 208, 412
MaeII ACGT 1 cut(s) 289
MalI GATC 6 cut(s) 69, 100, 145, 304, 349, 390
MboI GATC 6 cut(s) 67, 98, 143, 302, 347, 388
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 2 cut(s) 143, 347
MluCI AATT 5 cut(s) 63, 132, 170, 336, 471
MmeI TCCRAC 2 cut(s) 118, 137
MnlI CCTC 4 cut(s) 17, 27, 134, 425
MseI TTAA 4 cut(s) 270, 449, 474, 504
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 54
MunI CAATTG 1 cut(s) 170
Mva1269I GAATGC 2 cut(s) 327, 497
MwoI GCNNNNNNNGC 2 cut(s) 14, 218
NdeII GATC 6 cut(s) 67, 98, 143, 302, 347, 388
NlaIII CATG 2 cut(s) 95, 503
PctI GAATGC 2 cut(s) 327, 497
PfeI GAWTC 1 cut(s) 251
PinAI ACCGGT 1 cut(s) 53
PkrI GCNGC 4 cut(s) 7, 196, 211, 400
PshBI ATTAAT 1 cut(s) 474
PsuI RGATCY 2 cut(s) 143, 347
PvuII CAGCTG 1 cut(s) 8
SaqAI TTAA 4 cut(s) 270, 449, 474, 504
SatI GCNGC 4 cut(s) 6, 195, 210, 399
Sau3AI GATC 6 cut(s) 67, 98, 143, 302, 347, 388
SetI ASST 7 cut(s) 10, 38, 214, 292, 400, 446, 460
SfaNI GCATC 2 cut(s) 208, 412
SmlI CTYRAG 2 cut(s) 342, 402
SmoI CTYRAG 2 cut(s) 342, 402
Sse9I AATT 5 cut(s) 63, 132, 170, 336, 471
TaiI ACGT 1 cut(s) 292
TasI AATT 5 cut(s) 63, 132, 170, 336, 471
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 4 cut(s) 270, 449, 474, 504
Tru9I TTAA 4 cut(s) 270, 449, 474, 504
TseI GCWGC 4 cut(s) 5, 194, 209, 398
TspDTI ATGAA 7 cut(s) 113, 165, 177, 201, 317, 381, 492
VspI ATTAAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.