Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8291503.1

Orthogroup ID

OG0002167

Physical Location & Seq

Genomic Coordinates Forward (+)

38 .. 441

Gene Structure 404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8291503.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgcggctgatggaaggtgagcatgttggacctttcaatctcgggaaccctggtgaattcaccatgcttgaacttgcaaaggtggtccaagaaacaattgacaaagatgcaaagattgagttcaggccgaacactgaggatgacccgcacaagaggaagcctgatatcacaaaggccaaagaccttcttggttggcaaccaaaggtgtctctccgcaagggactcccactcatggtctcagacttcagcaaacgtatcttcggtgaccacaaggaagctgctggtgccaccaccaccatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

100

Amino Acids

11.25

Weight (kDa)

6.84

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47650 AT2G47650 AT3G62830 AT3G62830
fragaria_vesca	FvH4_2g25720 FvH4_2g25720 FvH4_2g25720 FvH4_4g18410
malus_domestica	MD00G1128000.v1.1 MD03G1288200.v1.1 MD11G1309900.v1.1 MD16G1167000.v1.1
prunus_persica	Prupe.1G134000_v2.0.a1 Prupe.8G261400_v2.0.a1 Prupe.8G261400_v2.0.a1
pyrus_communis	pycom16g14100
rosa_chinensis	RchiOBHm_Chr4g0422861 RchiOBHm_Chr6g0294001 RchiOBHm_Chr6g0294011
rosa_laevigata	RLG00000007599 RLG00000011908
rosa_multiflora	Rmu_co8291503.1_g000001 Rmu_sc0000830.1_g000041 Rmu_sc0002321.1_g000009 Rmu_sc0003941.1_g000011 Rmu_sc0004849.1_g000008 Rmu_sc0005126.1_g000004 Rmu_sc0007876.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364720 Rroxscaffold_7G00173730
rosa_rugosa	Rorug04G0181900 Rorug06G0240000
rosa_samantha	Rh4AG242300 Rh4BG245900 Rh4CG256200 Rh4DG240900 Rh6AG353100 Rh6BG360000 Rh6CG367300 Rh6DG353700 Rh6DG353800
rosa_wichuraiana	Rw4G020870 Rw6G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AciI	CCGC	3 cut(s)	4, 146, 214
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	37, 71
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	213, 241
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	125, 174
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	29, 85
AsuHPI	GGTGA	4 cut(s)	29, 52, 65, 275
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	29, 85
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	213, 241
BisI	GCNGC	2 cut(s)	5, 279
BlsI	GCNGC	2 cut(s)	6, 280
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	2 cut(s)	29, 85
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	29, 85
BmiI	GGNNCC	2 cut(s)	47, 286
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	97
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	126, 252
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	2 cut(s)	127, 176
BshNI	GGYRCC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	213, 241
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	127, 176
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	41
BspACI	CCGC	3 cut(s)	4, 146, 214
BspANI	GGCC	2 cut(s)	127, 176
BspCNI	CTCAG	2 cut(s)	127, 251
BspLI	GGNNCC	2 cut(s)	47, 286
BspT107I	GGYRCC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	135, 238
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	145
BstMAI	GTCTC	2 cut(s)	213, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	26
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	127, 176
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	29, 85
CviAII	CATG	4 cut(s)	23, 64, 232, 298
CviJI	RGCY	5 cut(s)	7, 127, 160, 176, 278
CviKI_1	RGCY	5 cut(s)	7, 127, 160, 176, 278
DdeI	CTNAG	2 cut(s)	135, 238
Eco31I	GGTCTC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	29, 85
Eco57I	CTGAAG	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	166
FaeI	CATG	4 cut(s)	26, 67, 235, 301
FaiI	YATR	4 cut(s)	24, 65, 233, 299
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	4 cut(s)	22, 63, 231, 297
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	5, 279
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	5, 279
GluI	GCNGC	2 cut(s)	5, 279
HaeIII	GGCC	2 cut(s)	127, 176
Hin1II	CATG	4 cut(s)	26, 67, 235, 301
HinfI	GANTC	1 cut(s)	222
HphI	GGTGA	4 cut(s)	29, 52, 65, 275
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	8, 194
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	2 cut(s)	77, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	135, 238
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	4 cut(s)	26, 67, 235, 301
LpnPI	CCDG	5 cut(s)	36, 63, 109, 174, 267
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	263
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	96
MluCI	AATT	2 cut(s)	56, 96
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	2 cut(s)	130, 147
MslI	CAYNNNNRTG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	284
NlaIII	CATG	4 cut(s)	26, 67, 235, 301
NlaIV	GGNNCC	2 cut(s)	47, 286
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	6, 280
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	49
PspEI	GGTNACC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	47, 286
PspPI	GGNCC	2 cut(s)	29, 85
RseI	CAYNNNNRTG	1 cut(s)	296
SatI	GCNGC	2 cut(s)	5, 279
Sau96I	GGNCC	2 cut(s)	29, 85
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	7 cut(s)	19, 34, 84, 186, 207, 256, 280
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	2 cut(s)	29, 85
SmiMI	CAYNNNNRTG	1 cut(s)	296
Sse9I	AATT	2 cut(s)	56, 96
SsiI	CCGC	3 cut(s)	4, 146, 214
StyD4I	CCNGG	1 cut(s)	49
TaiI	ACGT	1 cut(s)	256
TasI	AATT	2 cut(s)	56, 96
TauI	GCSGC	1 cut(s)	7
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	263
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	29, 85
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.