Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002167

Physical Location & Seq

Genomic Coordinates Forward (+)

54906715 .. 54909228

Gene Structure 2514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG242300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGAACTCCGATCAGTTAGTTCATAGAACCCACCACACCCACAATGAAGACCTACAAGACACCCCCATCCTCGAATCAACCCCGCAAAACAAGCCTCGTAACCTCTCCACGAACCCAATCCGCTACATGCTTCGCGAGCAACGCATCCTCTTCGTCCTCATCGGCATTGCCATCGCCACCCTCTTCTTCACCGCCTTCCCCTTATCAAACCCAGAGCTAGCACCCTCCTCGCTATCTTCCCCGCTCCTCCATGACCCGACCCGTTACTCGAGTTTCTCGTCCGGGTCGTCTGTCGTGCCGACCCGGCGGGTTCTGTTGGAGGGTCTCGAGTCGATGAATGTGGGCGGGAAAGTGCCGCTGGGGTTGAAATCGAAGAGCCAGAGGATTGTGGTGACTGGTGGGGCCGGGTTCGTTGGGAGCCACCTTGTGGACCGTCTGATTGCGAGAGGGGACAGTGTGATCGTCATTGATAATTTCTTTACGGGTCGGAAAGAGAACCTGGCGCACCATTTCGGAAACCCCAAGTTTGAGCTCATCAGACACGACGTCGTTGAGCCGATTCTGTTGGAGGTTGACCAAATCTACCACTTGGCCTGCCCTGCCTCTCCTGTGCATTACAAGTTTAATCCGACGAATGTGGTGGGCACATTGAACATGCTTGGACTAGCCAAAAGGGTGGGTGCACGCTTCTTGCTCACAAGCACCAGTGAGGTCTACGGTGACCCCCTGCAGCATCCCCAGGTTGAGACCTACTGGGGCAATGTCAACCCCATCGGTGTAAGGAGTTGTTATGATGAGGGAAAGCGCACAGCAGAGACATTGAGCATGGACTATCATAGAGGCCTTGGCATTGAGGTGAGAATTGCCAGAATTTTCAATACTTACGGACCACGAATGTGCATTGATGATGGCCGTGTTGTTAGCAATTTTGTAGCTCAGGCATTAAGGAAGGAGCCATTAACAGTTTATGGTGATGGCAAGCAAACCAGAAGTTTCCAATACGTTTCTGACTTGGTGGAGGGACTAATGCGGCTGATGGAAGGGAATCATGTAGGACCTTTCAATCTTGGAAATCCTGGTGAATTCACCATGCTAGAACTTGCTCAGGTTGTACAAGACACCATAGACCCCAATGCAAAGATAGAGTTCAGGCCAAACACAGAAGATGACCCCCATAAGAGGAAGCCAGACATTTCAAAGGCAAAAGAGCTTCTCGGATGGGAGCCTACTGTGTCTCTCAGAAAGGGACTTCCTCTCATGGTCACTGACTTTAGACAGCGCATATTTGGCGACGCCAAGGACAACATTGCAGCTGAGGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009987 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

441

Amino Acids

49.13

Weight (kDa)

6.96

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	128 - 386	2e-06	RmlD substrate binding domain
Epimerase	PF01370	129 - 357	1.3e-42	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	130 - 276	1.9e-10	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	131 - 418	1.8e-50	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47650 AT2G47650 AT3G62830 AT3G62830
fragaria_vesca	FvH4_2g25720 FvH4_2g25720 FvH4_2g25720 FvH4_4g18410
malus_domestica	MD00G1128000.v1.1 MD03G1288200.v1.1 MD11G1309900.v1.1 MD16G1167000.v1.1
prunus_persica	Prupe.1G134000_v2.0.a1 Prupe.8G261400_v2.0.a1 Prupe.8G261400_v2.0.a1
pyrus_communis	pycom16g14100
rosa_chinensis	RchiOBHm_Chr4g0422861 RchiOBHm_Chr6g0294001 RchiOBHm_Chr6g0294011
rosa_laevigata	RLG00000007599 RLG00000011908
rosa_multiflora	Rmu_co8291503.1_g000001 Rmu_sc0000830.1_g000041 Rmu_sc0002321.1_g000009 Rmu_sc0003941.1_g000011 Rmu_sc0004849.1_g000008 Rmu_sc0005126.1_g000004 Rmu_sc0007876.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364720 Rroxscaffold_7G00173730
rosa_rugosa	Rorug04G0181900 Rorug06G0240000
rosa_samantha	Rh4AG242300 Rh4BG245900 Rh4CG256200 Rh4DG240900 Rh6AG353100 Rh6BG360000 Rh6CG367300 Rh6DG353700 Rh6DG353800
rosa_wichuraiana	Rw4G020870 Rw6G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	549
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	714
AccII	CGCG	1 cut(s)	135
AciI	CCGC	8 cut(s)	83, 121, 192, 242, 307, 345, 356, 1030
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	2 cut(s)	870, 1082
AcyI	GRCGYC	2 cut(s)	546, 1293
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	1 cut(s)	1113
AfiI	CCNNNNNNNGG	2 cut(s)	427, 1179
AgsI	TTSAA	5 cut(s)	367, 652, 877, 1063, 1197
AhdI	GACNNNNNGTC	1 cut(s)	545
AjnI	CCWGG	3 cut(s)	498, 738, 1075
AleI	CACNNNNGTG	1 cut(s)	895
AluBI	AGCT	6 cut(s)	217, 532, 935, 1210, 1313, 1322
AluI	AGCT	6 cut(s)	217, 532, 935, 1210, 1313, 1322
Alw21I	GWGCWC	2 cut(s)	534, 685
Alw26I	GTCTC	4 cut(s)	329, 740, 809, 1239
Alw44I	GTGCAC	1 cut(s)	681
Ama87I	CYCGRG	2 cut(s)	268, 326
AoxI	GGCC	5 cut(s)	402, 591, 841, 910, 1151
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	3 cut(s)	730, 1310, 1319
ApoI	RAATTY	2 cut(s)	870, 1082
AspLEI	GCGC	3 cut(s)	505, 807, 1281
AspS9I	GGNCC	4 cut(s)	402, 430, 887, 1055
AsuC2I	CCSGG	3 cut(s)	283, 304, 406
AsuHPI	GGTGA	7 cut(s)	181, 403, 731, 868, 983, 1078, 1091
AsuNHI	GCTAGC	1 cut(s)	217
AvaI	CYCGRG	2 cut(s)	268, 326
AvaII	GGWCC	3 cut(s)	430, 887, 1055
BaeGI	GKGCMC	2 cut(s)	647, 685
BanII	GRGCYC	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	534, 685
BbvCI	CCTCAGC	1 cut(s)	1314
BbvI	GCAGC	2 cut(s)	742, 1322
BccI	CCATC	7 cut(s)	74, 179, 779, 902, 968, 1030, 1212
BceAI	ACGGC	1 cut(s)	897
BcgI	CGANNNNNNTGC	6 cut(s)	133, 154, 167, 188, 210, 244
BciT130I	CCWGG	3 cut(s)	500, 740, 1077
BcnI	CCSGG	3 cut(s)	283, 304, 406
BcoDI	GTCTC	4 cut(s)	329, 740, 809, 1239
BfaI	CTAG	3 cut(s)	218, 665, 1094
BfmI	CTRYAG	1 cut(s)	728
BglI	GCCNNNNNGGC	1 cut(s)	304
BisI	GCNGC	5 cut(s)	356, 731, 1031, 1311, 1320
BlsI	GCNGC	5 cut(s)	357, 732, 1032, 1312, 1321
Bme1390I	CCNGG	6 cut(s)	283, 304, 406, 500, 740, 1077
Bme18I	GGWCC	3 cut(s)	430, 887, 1055
BmeRI	GACNNNNNGTC	1 cut(s)	545
BmeT110I	CYCGRG	2 cut(s)	268, 326
BmgT120I	GGNCC	4 cut(s)	402, 430, 887, 1055
BmiI	GGNNCC	4 cut(s)	403, 419, 954, 1224
BmrFI	CCNGG	6 cut(s)	283, 304, 406, 500, 740, 1077
BmrI	ACTGGG	1 cut(s)	763
BmsI	GCATC	2 cut(s)	153, 742
BmtI	GCTAGC	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	763
BpiI	GAAGAC	1 cut(s)	54
Bpu10I	CCTNAGC	3 cut(s)	936, 1104, 1314
BpuMI	CCSGG	3 cut(s)	283, 304, 406
BsaHI	GRCGYC	2 cut(s)	546, 1293
BsaI	GGTCTC	2 cut(s)	329, 740
BsaJI	CCNNGG	3 cut(s)	738, 844, 1296
Bsc4I	CCNNNNNNNGG	2 cut(s)	427, 1179
Bse1I	ACTGG	3 cut(s)	400, 705, 758
Bse3DI	GCAATG	3 cut(s)	165, 766, 1305
BseBI	CCWGG	3 cut(s)	500, 740, 1077
BseDI	CCNNGG	3 cut(s)	738, 844, 1296
BseGI	GGATG	4 cut(s)	66, 144, 733, 1223
BseLI	CCNNNNNNNGG	2 cut(s)	427, 1179
BseMI	GCAATG	3 cut(s)	165, 766, 1305
BseMII	CTCAG	4 cut(s)	950, 1118, 1252, 1305
BseNI	ACTGG	3 cut(s)	400, 705, 758
BseRI	GAGGAG	2 cut(s)	217, 236
BseSI	GKGCMC	2 cut(s)	647, 685
BseXI	GCAGC	2 cut(s)	742, 1322
BseYI	CCCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	5 cut(s)	404, 593, 843, 912, 1153
BsiHKAI	GWGCWC	2 cut(s)	534, 685
BsiHKCI	CYCGRG	2 cut(s)	268, 326
BsiSI	CCGG	3 cut(s)	282, 304, 405
BslFI	GGGAC	3 cut(s)	464, 1035, 1260
BslI	CCNNNNNNNGG	2 cut(s)	427, 1179
BsmAI	GTCTC	4 cut(s)	329, 740, 809, 1239
BsmFI	GGGAC	3 cut(s)	464, 1035, 1260
BsnI	GGCC	5 cut(s)	404, 593, 843, 912, 1153
Bso31I	GGTCTC	2 cut(s)	329, 740
BsoBI	CYCGRG	2 cut(s)	268, 326
Bsp1286I	GDGCHC	3 cut(s)	534, 647, 685
Bsp1407I	TGTACA	1 cut(s)	1111
Bsp143I	GATC	2 cut(s)	10, 459
Bsp68I	TCGCGA	1 cut(s)	135
BspACI	CCGC	8 cut(s)	83, 121, 192, 242, 307, 345, 356, 1030
BspANI	GGCC	5 cut(s)	404, 593, 843, 912, 1153
BspCNI	CTCAG	4 cut(s)	949, 1117, 1251, 1306
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	4 cut(s)	403, 419, 954, 1224
BspMAI	CTGCAG	1 cut(s)	732
BspOI	GCTAGC	1 cut(s)	221
BspQI	GCTCTTC	1 cut(s)	368
BspTNI	GGTCTC	2 cut(s)	329, 740
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	3 cut(s)	165, 766, 1305
BsrGI	TGTACA	1 cut(s)	1111
BsrI	ACTGG	3 cut(s)	400, 705, 758
BssECI	CCNNGG	3 cut(s)	738, 844, 1296
BssMI	GATC	2 cut(s)	10, 459
BssNI	GRCGYC	2 cut(s)	546, 1293
BssT1I	CCWWGG	2 cut(s)	844, 1296
Bst2UI	CCWGG	3 cut(s)	500, 740, 1077
Bst4CI	ACNGT	5 cut(s)	434, 455, 719, 964, 1231
Bst6I	CTCTTC	3 cut(s)	155, 188, 368
BstACI	GRCGYC	2 cut(s)	546, 1293
BstAUI	TGTACA	1 cut(s)	1111
BstC8I	GCNNGC	5 cut(s)	137, 219, 595, 685, 980
BstDEI	CTNAG	4 cut(s)	936, 1104, 1238, 1314
BstEII	GGTNACC	1 cut(s)	719
BstF5I	GGATG	4 cut(s)	66, 144, 733, 1223
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	3 cut(s)	505, 807, 1281
BstKTI	GATC	2 cut(s)	13, 462
BstMAI	GTCTC	4 cut(s)	329, 740, 809, 1239
BstMBI	GATC	2 cut(s)	10, 459
BstMWI	GCNNNNNNNGC	8 cut(s)	91, 136, 141, 304, 599, 1287, 1316, 1319
BstNI	CCWGG	3 cut(s)	500, 740, 1077
BstNSI	RCATGY	2 cut(s)	130, 658
BstPI	GGTNACC	1 cut(s)	719
BstSCI	CCNGG	6 cut(s)	281, 302, 404, 498, 738, 1075
BstSFI	CTRYAG	1 cut(s)	728
BstSLI	GKGCMC	2 cut(s)	647, 685
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	742, 1322
BstV2I	GAAGAC	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	676
BsuRI	GGCC	5 cut(s)	404, 593, 843, 912, 1153
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	4 cut(s)	66, 144, 733, 1223
BtsIMutI	CAGTG	3 cut(s)	460, 712, 1263
BtuMI	TCGCGA	1 cut(s)	135
Cac8I	GCNNGC	5 cut(s)	137, 219, 595, 685, 980
CfoI	GCGC	3 cut(s)	505, 807, 1281
Cfr13I	GGNCC	4 cut(s)	402, 430, 887, 1055
CseI	GACGC	1 cut(s)	1301
Csp6I	GTAC	1 cut(s)	1112
CviAII	CATG	7 cut(s)	127, 251, 655, 826, 1049, 1090, 1258
CviQI	GTAC	1 cut(s)	1112
DdeI	CTNAG	4 cut(s)	936, 1104, 1238, 1314
DpnI	GATC	2 cut(s)	12, 461
DpnII	GATC	2 cut(s)	10, 459
DraIII	CACNNNGTG	1 cut(s)	427
DriI	GACNNNNNGTC	1 cut(s)	545
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	3 cut(s)	155, 188, 368
Eam1105I	GACNNNNNGTC	1 cut(s)	545
EarI	CTCTTC	3 cut(s)	155, 188, 368
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	2 cut(s)	844, 1296
Eco147I	AGGCCT	1 cut(s)	843
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	2 cut(s)	329, 740
Eco47I	GGWCC	3 cut(s)	430, 887, 1055
Eco53kI	GAGCTC	1 cut(s)	532
Eco88I	CYCGRG	2 cut(s)	268, 326
Eco91I	GGTNACC	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	1055
EcoO65I	GGTNACC	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	1082
EcoRII	CCWGG	3 cut(s)	498, 738, 1075
EcoT14I	CCWWGG	2 cut(s)	844, 1296
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	2 cut(s)	844, 1296
FaeI	CATG	7 cut(s)	130, 254, 658, 829, 1052, 1093, 1261
FaqI	GGGAC	3 cut(s)	464, 1035, 1260
FatI	CATG	7 cut(s)	126, 250, 654, 825, 1048, 1089, 1257
FauI	CCCGC	4 cut(s)	90, 249, 300, 338
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	5 cut(s)	356, 731, 1031, 1311, 1320
FokI	GGATG	4 cut(s)	53, 131, 720, 1230
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	5 cut(s)	356, 731, 1031, 1311, 1320
FspBI	CTAG	3 cut(s)	218, 665, 1094
GlaI	GCGC	3 cut(s)	504, 806, 1280
GluI	GCNGC	5 cut(s)	356, 731, 1031, 1311, 1320
GsaI	CCCAGC	1 cut(s)	362
HaeIII	GGCC	5 cut(s)	404, 593, 843, 912, 1153
HapII	CCGG	3 cut(s)	282, 304, 405
HgaI	GACGC	1 cut(s)	1301
HhaI	GCGC	3 cut(s)	505, 807, 1281
Hin1I	GRCGYC	2 cut(s)	546, 1293
Hin1II	CATG	7 cut(s)	130, 254, 658, 829, 1052, 1093, 1261
Hin6I	GCGC	3 cut(s)	503, 805, 1279
HinP1I	GCGC	3 cut(s)	503, 805, 1279
HincII	GTYRAC	2 cut(s)	574, 766
HindII	GTYRAC	2 cut(s)	574, 766
HinfI	GANTC	4 cut(s)	74, 329, 559, 1045
HpaII	CCGG	3 cut(s)	282, 304, 405
HphI	GGTGA	7 cut(s)	181, 403, 731, 868, 983, 1078, 1091
Hpy166II	GTNNAC	5 cut(s)	430, 574, 683, 715, 766
Hpy188I	TCNGA	9 cut(s)	10, 438, 489, 515, 539, 630, 1009, 1217, 1241
Hpy188III	TCNNGA	2 cut(s)	134, 326
Hpy8I	GTNNAC	5 cut(s)	430, 574, 683, 715, 766
Hpy99I	CGWCG	4 cut(s)	548, 551, 634, 1295
HpyAV	CCTTC	3 cut(s)	205, 943, 1034
HpyCH4III	ACNGT	5 cut(s)	434, 455, 719, 964, 1231
HpyCH4IV	ACGT	2 cut(s)	546, 1002
HpyCH4V	TGCA	6 cut(s)	613, 683, 730, 900, 1136, 1310
HpyF10VI	GCNNNNNNNGC	8 cut(s)	91, 136, 141, 304, 599, 1287, 1316, 1319
HpyF3I	CTNAG	4 cut(s)	936, 1104, 1238, 1314
HpySE526I	ACGT	2 cut(s)	546, 1002
Hsp92I	GRCGYC	2 cut(s)	546, 1293
Hsp92II	CATG	7 cut(s)	130, 254, 658, 829, 1052, 1093, 1261
HspAI	GCGC	3 cut(s)	503, 805, 1279
Kzo9I	GATC	2 cut(s)	10, 459
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	4 cut(s)	249, 417, 952, 1222
Lsp1109I	GCAGC	2 cut(s)	742, 1322
LweI	GCATC	2 cut(s)	153, 742
MaeI	CTAG	3 cut(s)	218, 665, 1094
MaeII	ACGT	2 cut(s)	546, 1002
MaeIII	GTNAC	5 cut(s)	98, 263, 391, 719, 1261
MalI	GATC	2 cut(s)	12, 461
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	2 cut(s)	10, 459
MboII	GAAGA	7 cut(s)	59, 142, 175, 178, 228, 385, 1175
MhlI	GDGCHC	3 cut(s)	534, 647, 685
MluCI	AATT	5 cut(s)	472, 861, 870, 925, 1082
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	4 cut(s)	297, 467, 546, 653
MseI	TTAA	4 cut(s)	624, 944, 959, 1324
MslI	CAYNNNNRTG	2 cut(s)	854, 895
MspA1I	CMGCKG	2 cut(s)	358, 1313
MspI	CCGG	3 cut(s)	282, 304, 405
MspR9I	CCNGG	6 cut(s)	283, 304, 406, 500, 740, 1077
MvaI	CCWGG	3 cut(s)	500, 740, 1077
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	8 cut(s)	91, 136, 141, 304, 599, 1287, 1316, 1319
NciI	CCSGG	3 cut(s)	283, 304, 406
NdeII	GATC	2 cut(s)	10, 459
NheI	GCTAGC	1 cut(s)	217
NlaIII	CATG	7 cut(s)	130, 254, 658, 829, 1052, 1093, 1261
NlaIV	GGNNCC	4 cut(s)	403, 419, 954, 1224
NmuCI	GTSAC	3 cut(s)	391, 719, 1261
NruI	TCGCGA	1 cut(s)	135
NspI	RCATGY	2 cut(s)	130, 658
OliI	CACNNNNGTG	1 cut(s)	895
PaeR7I	CTCGAG	2 cut(s)	268, 326
PceI	AGGCCT	1 cut(s)	843
PciSI	GCTCTTC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	2 cut(s)	275, 284
PfeI	GAWTC	3 cut(s)	74, 559, 1045
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	5 cut(s)	357, 732, 1032, 1312, 1321
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	1055
Psp124BI	GAGCTC	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	1055
Psp6I	CCWGG	3 cut(s)	498, 738, 1075
PspEI	GGTNACC	1 cut(s)	719
PspFI	CCCAGC	1 cut(s)	358
PspGI	CCWGG	3 cut(s)	498, 738, 1075
PspN4I	GGNNCC	4 cut(s)	403, 419, 954, 1224
PspPI	GGNCC	4 cut(s)	402, 430, 887, 1055
PspPPI	RGGWCCY	1 cut(s)	1055
PspXI	VCTCGAGB	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	732
PvuII	CAGCTG	1 cut(s)	1313
RruI	TCGCGA	1 cut(s)	135
RsaI	GTAC	1 cut(s)	1113
RsaNI	GTAC	1 cut(s)	1112
RseI	CAYNNNNRTG	2 cut(s)	854, 895
SacI	GAGCTC	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	4 cut(s)	624, 944, 959, 1324
SatI	GCNGC	5 cut(s)	356, 731, 1031, 1311, 1320
Sau3AI	GATC	2 cut(s)	10, 459
Sau96I	GGNCC	4 cut(s)	402, 430, 887, 1055
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	6 cut(s)	283, 304, 406, 500, 740, 1077
SduI	GDGCHC	3 cut(s)	534, 647, 685
SfaNI	GCATC	2 cut(s)	153, 742
SfcI	CTRYAG	1 cut(s)	728
Sfr274I	CTCGAG	2 cut(s)	268, 326
SinI	GGWCC	3 cut(s)	430, 887, 1055
SlaI	CTCGAG	2 cut(s)	268, 326
SmiMI	CAYNNNNRTG	2 cut(s)	854, 895
SmlI	CTYRAG	2 cut(s)	268, 326
SmoI	CTYRAG	2 cut(s)	268, 326
Sse9I	AATT	5 cut(s)	472, 861, 870, 925, 1082
SseBI	AGGCCT	1 cut(s)	843
SsiI	CCGC	8 cut(s)	83, 121, 192, 242, 307, 345, 356, 1030
SspMI	CTAG	3 cut(s)	218, 665, 1094
SstI	GAGCTC	1 cut(s)	534
StuI	AGGCCT	1 cut(s)	843
StyD4I	CCNGG	6 cut(s)	281, 302, 404, 498, 738, 1075
StyI	CCWWGG	2 cut(s)	844, 1296
TaaI	ACNGT	5 cut(s)	434, 455, 719, 964, 1231
TaiI	ACGT	2 cut(s)	549, 1005
TaqI	TCGA	5 cut(s)	72, 269, 327, 332, 371
TasI	AATT	5 cut(s)	472, 861, 870, 925, 1082
TatI	WGTACW	1 cut(s)	1111
TauI	GCSGC	2 cut(s)	358, 1033
TfiI	GAWTC	3 cut(s)	74, 559, 1045
Tru1I	TTAA	4 cut(s)	624, 944, 959, 1324
Tru9I	TTAA	4 cut(s)	624, 944, 959, 1324
TscAI	CASTG	3 cut(s)	460, 712, 1270
TseFI	GTSAC	3 cut(s)	391, 719, 1261
TseI	GCWGC	3 cut(s)	730, 1310, 1319
Tsp45I	GTSAC	3 cut(s)	391, 719, 1261
TspDTI	ATGAA	4 cut(s)	11, 17, 60, 350
TspGWI	ACGGA	1 cut(s)	900
TspRI	CASTG	3 cut(s)	460, 712, 1270
Van91I	CCANNNNNTGG	1 cut(s)	427
VneI	GTGCAC	1 cut(s)	681
VpaK11BI	GGWCC	3 cut(s)	430, 887, 1055
XapI	RAATTY	2 cut(s)	870, 1082
XceI	RCATGY	2 cut(s)	130, 658
XhoI	CTCGAG	2 cut(s)	268, 326
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	3 cut(s)	218, 665, 1094
ZraI	GACGTC	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.