Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007876.1

Orthogroup ID

OG0002167

Physical Location & Seq

Genomic Coordinates Forward (+)

1898 .. 3420

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007876.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgttaatggttggggtccttgacttggtggttcacaagacgaatgtggtgggcacattgaacatgcttggactagccaaaagggtgggtgcacgcttcttgctcacaagcaccagtgaggtctacggtgaccctctgcagcatccccaggttgagacctactggggcaatgtcaaccccatcggtgtaaggagttgttatgatgagggaaagcgcacagcagagacattgagcatggactatcatagaggccttggcattgaggtgagaattgccagaattttcaatacttacggaccacgaatgtgcattgatgatggccgtgttgttagcaattttgtagctcaggcattaaggaaggagccattaacagtttatggtgatggcaagcaaaccagaagtttccaatacgtttctgacttggtggagggactaatgcggctgatggaagggaatcacgtaggacctttcaatcttggaaatcctggtgaattcaccatgctagaacttgctcaggttgtacaagacaccatagaccccaatgcaaagatagagttcaggccaaacacagaagatgacccccataagaggaagccagacatttcaaaggcaaaagagcttctcggatgggagcctactgtgtctctcagaaaaggacttcctctcatggtcactgactttagacagcgcatatttggcgacgccaaggacagcattgcagctgaggcagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009987 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

244

Amino Acids

27.21

Weight (kDa)

6.23

Isoelectric Point (pI)

26.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47650 AT2G47650 AT3G62830 AT3G62830
fragaria_vesca	FvH4_2g25720 FvH4_2g25720 FvH4_2g25720 FvH4_4g18410
malus_domestica	MD00G1128000.v1.1 MD03G1288200.v1.1 MD11G1309900.v1.1 MD16G1167000.v1.1
prunus_persica	Prupe.1G134000_v2.0.a1 Prupe.8G261400_v2.0.a1 Prupe.8G261400_v2.0.a1
pyrus_communis	pycom16g14100
rosa_chinensis	RchiOBHm_Chr4g0422861 RchiOBHm_Chr6g0294001 RchiOBHm_Chr6g0294011
rosa_laevigata	RLG00000007599 RLG00000011908
rosa_multiflora	Rmu_co8291503.1_g000001 Rmu_sc0000830.1_g000041 Rmu_sc0002321.1_g000009 Rmu_sc0003941.1_g000011 Rmu_sc0004849.1_g000008 Rmu_sc0005126.1_g000004 Rmu_sc0007876.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364720 Rroxscaffold_7G00173730
rosa_rugosa	Rorug04G0181900 Rorug06G0240000
rosa_samantha	Rh4AG242300 Rh4BG245900 Rh4CG256200 Rh4DG240900 Rh6AG353100 Rh6BG360000 Rh6CG367300 Rh6DG353700 Rh6DG353800
rosa_wichuraiana	Rw4G020870 Rw6G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	279, 491
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	2 cut(s)	25, 588
AgsI	TTSAA	4 cut(s)	61, 286, 472, 606
AjnI	CCWGG	2 cut(s)	147, 484
AleI	CACNNNNGTG	1 cut(s)	304
AluBI	AGCT	4 cut(s)	344, 619, 722, 731
AluI	AGCT	4 cut(s)	344, 619, 722, 731
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	3 cut(s)	149, 218, 648
Alw44I	GTGCAC	1 cut(s)	90
AoxI	GGCC	3 cut(s)	250, 319, 560
ApaLI	GTGCAC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	139, 719, 728
ApoI	RAATTY	2 cut(s)	279, 491
AspLEI	GCGC	2 cut(s)	216, 690
AspS9I	GGNCC	3 cut(s)	16, 296, 464
AsuHPI	GGTGA	5 cut(s)	140, 277, 392, 487, 500
AvaII	GGWCC	3 cut(s)	16, 296, 464
BaeGI	GKGCMC	2 cut(s)	56, 94
Bbv12I	GWGCWC	1 cut(s)	94
BbvCI	CCTCAGC	1 cut(s)	723
BbvI	GCAGC	2 cut(s)	151, 731
BccI	CCATC	5 cut(s)	188, 311, 377, 439, 621
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	2 cut(s)	149, 486
BcoDI	GTCTC	3 cut(s)	149, 218, 648
BfaI	CTAG	2 cut(s)	74, 503
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	4 cut(s)	140, 440, 720, 729
BlsI	GCNGC	4 cut(s)	141, 441, 721, 730
Bme1390I	CCNGG	2 cut(s)	149, 486
Bme18I	GGWCC	3 cut(s)	16, 296, 464
BmgT120I	GGNCC	3 cut(s)	16, 296, 464
BmiI	GGNNCC	3 cut(s)	17, 363, 633
BmrFI	CCNGG	2 cut(s)	149, 486
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	172
Bpu10I	CCTNAGC	3 cut(s)	345, 513, 723
BsaAI	YACGTR	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	147, 253, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 588
Bse1I	ACTGG	2 cut(s)	114, 167
Bse3DI	GCAATG	2 cut(s)	175, 714
BseBI	CCWGG	2 cut(s)	149, 486
BseDI	CCNNGG	3 cut(s)	147, 253, 705
BseGI	GGATG	2 cut(s)	142, 632
BseLI	CCNNNNNNNGG	2 cut(s)	25, 588
BseMI	GCAATG	2 cut(s)	175, 714
BseMII	CTCAG	4 cut(s)	359, 527, 661, 714
BseNI	ACTGG	2 cut(s)	114, 167
BseSI	GKGCMC	2 cut(s)	56, 94
BseXI	GCAGC	2 cut(s)	151, 731
BshFI	GGCC	3 cut(s)	252, 321, 562
BsiHKAI	GWGCWC	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	25, 588
BsmAI	GTCTC	3 cut(s)	149, 218, 648
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	252, 321, 562
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	56, 94
Bsp1407I	TGTACA	1 cut(s)	520
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	3 cut(s)	252, 321, 562
BspCNI	CTCAG	4 cut(s)	358, 526, 660, 715
BspLI	GGNNCC	3 cut(s)	17, 363, 633
BspMAI	CTGCAG	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	175, 714
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	114, 167
BssECI	CCNNGG	3 cut(s)	147, 253, 705
BssNI	GRCGYC	1 cut(s)	702
BssT1I	CCWWGG	2 cut(s)	253, 705
Bst2UI	CCWGG	2 cut(s)	149, 486
Bst4CI	ACNGT	3 cut(s)	128, 373, 640
BstACI	GRCGYC	1 cut(s)	702
BstAUI	TGTACA	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	94, 389
BstDEI	CTNAG	4 cut(s)	345, 513, 647, 723
BstEII	GGTNACC	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	142, 632
BstHHI	GCGC	2 cut(s)	216, 690
BstMAI	GTCTC	3 cut(s)	149, 218, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	696, 725, 728
BstNI	CCWGG	2 cut(s)	149, 486
BstNSI	RCATGY	1 cut(s)	67
BstPI	GGTNACC	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	147, 484
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	2 cut(s)	56, 94
BstV1I	GCAGC	2 cut(s)	151, 731
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	3 cut(s)	252, 321, 562
BtsCI	GGATG	2 cut(s)	142, 632
BtsIMutI	CAGTG	2 cut(s)	121, 672
Cac8I	GCNNGC	2 cut(s)	94, 389
CfoI	GCGC	2 cut(s)	216, 690
Cfr13I	GGNCC	3 cut(s)	16, 296, 464
CseI	GACGC	1 cut(s)	710
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	4 cut(s)	64, 235, 499, 667
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	4 cut(s)	345, 513, 647, 723
EaeI	YGGCCR	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	253, 705
Eco147I	AGGCCT	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	3 cut(s)	16, 296, 464
Eco91I	GGTNACC	1 cut(s)	128
EcoO109I	RGGNCCY	2 cut(s)	16, 464
EcoO65I	GGTNACC	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	147, 484
EcoT14I	CCWWGG	2 cut(s)	253, 705
ErhI	CCWWGG	2 cut(s)	253, 705
FaeI	CATG	4 cut(s)	67, 238, 502, 670
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	4 cut(s)	63, 234, 498, 666
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	4 cut(s)	140, 440, 720, 729
FokI	GGATG	2 cut(s)	129, 639
Fsp4HI	GCNGC	4 cut(s)	140, 440, 720, 729
FspBI	CTAG	2 cut(s)	74, 503
GlaI	GCGC	2 cut(s)	215, 689
GluI	GCNGC	4 cut(s)	140, 440, 720, 729
HaeIII	GGCC	3 cut(s)	252, 321, 562
HgaI	GACGC	1 cut(s)	710
HhaI	GCGC	2 cut(s)	216, 690
Hin1I	GRCGYC	1 cut(s)	702
Hin1II	CATG	4 cut(s)	67, 238, 502, 670
Hin6I	GCGC	2 cut(s)	214, 688
HinP1I	GCGC	2 cut(s)	214, 688
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	454
HphI	GGTGA	5 cut(s)	140, 277, 392, 487, 500
Hpy166II	GTNNAC	4 cut(s)	34, 92, 124, 175
Hpy188I	TCNGA	3 cut(s)	418, 626, 650
Hpy8I	GTNNAC	4 cut(s)	34, 92, 124, 175
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	2 cut(s)	352, 443
HpyCH4III	ACNGT	3 cut(s)	128, 373, 640
HpyCH4IV	ACGT	2 cut(s)	411, 459
HpyCH4V	TGCA	5 cut(s)	92, 139, 309, 545, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	696, 725, 728
HpyF3I	CTNAG	4 cut(s)	345, 513, 647, 723
HpySE526I	ACGT	2 cut(s)	411, 459
Hsp92I	GRCGYC	1 cut(s)	702
Hsp92II	CATG	4 cut(s)	67, 238, 502, 670
HspAI	GCGC	2 cut(s)	214, 688
LmnI	GCTCC	2 cut(s)	361, 631
Lsp1109I	GCAGC	2 cut(s)	151, 731
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	74, 503
MaeII	ACGT	2 cut(s)	411, 459
MaeIII	GTNAC	2 cut(s)	128, 670
MboII	GAAGA	1 cut(s)	584
MhlI	GDGCHC	2 cut(s)	56, 94
MluCI	AATT	4 cut(s)	270, 279, 334, 491
MnlI	CCTC	9 cut(s)	112, 144, 199, 242, 256, 421, 582, 672, 718
MseI	TTAA	4 cut(s)	5, 353, 368, 733
MslI	CAYNNNNRTG	2 cut(s)	263, 304
MspA1I	CMGCKG	1 cut(s)	722
MspR9I	CCNGG	2 cut(s)	149, 486
MvaI	CCWGG	2 cut(s)	149, 486
MwoI	GCNNNNNNNGC	3 cut(s)	696, 725, 728
NlaIII	CATG	4 cut(s)	67, 238, 502, 670
NlaIV	GGNNCC	3 cut(s)	17, 363, 633
NmuCI	GTSAC	2 cut(s)	128, 670
NspI	RCATGY	1 cut(s)	67
OliI	CACNNNNGTG	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	4 cut(s)	141, 441, 721, 730
Ppu21I	YACGTR	1 cut(s)	460
PpuMI	RGGWCCY	2 cut(s)	16, 464
Psp5II	RGGWCCY	2 cut(s)	16, 464
Psp6I	CCWGG	2 cut(s)	147, 484
PspEI	GGTNACC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	147, 484
PspN4I	GGNNCC	3 cut(s)	17, 363, 633
PspPI	GGNCC	3 cut(s)	16, 296, 464
PspPPI	RGGWCCY	2 cut(s)	16, 464
PstI	CTGCAG	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	2 cut(s)	263, 304
SaqAI	TTAA	4 cut(s)	5, 353, 368, 733
SatI	GCNGC	4 cut(s)	140, 440, 720, 729
Sau96I	GGNCC	3 cut(s)	16, 296, 464
ScrFI	CCNGG	2 cut(s)	149, 486
SduI	GDGCHC	2 cut(s)	56, 94
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	137
SinI	GGWCC	3 cut(s)	16, 296, 464
SmiMI	CAYNNNNRTG	2 cut(s)	263, 304
Sse9I	AATT	4 cut(s)	270, 279, 334, 491
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	2 cut(s)	74, 503
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	147, 484
StyI	CCWWGG	2 cut(s)	253, 705
TaaI	ACNGT	3 cut(s)	128, 373, 640
TaiI	ACGT	2 cut(s)	414, 462
TasI	AATT	4 cut(s)	270, 279, 334, 491
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	4 cut(s)	5, 353, 368, 733
Tru9I	TTAA	4 cut(s)	5, 353, 368, 733
TscAI	CASTG	2 cut(s)	121, 679
TseFI	GTSAC	2 cut(s)	128, 670
TseI	GCWGC	3 cut(s)	139, 719, 728
Tsp45I	GTSAC	2 cut(s)	128, 670
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	121, 679
VneI	GTGCAC	1 cut(s)	90
VpaK11BI	GGWCC	3 cut(s)	16, 296, 464
XapI	RAATTY	2 cut(s)	279, 491
XceI	RCATGY	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	2 cut(s)	74, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.