Rh6DG353700

UDP-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002167
Physical Location & Seq
Forward (+)
55306269 .. 55306994
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG353700.1

Sequence Viewer

Length: 726 bp
ATGGGCTCGGAGCTGATATTCCGGGGCGGGCACGACGAGGCCCAGCCCGCTTCCGACACCTACTCGCCGAAACGCCCGAAGCCGTGGGCCTCGGTGACCCGCCCGATTGGGTACCTGCTCCGGGAACAGCGCCTGATTTTCATCCTCGTCGGCATTGCCATCGCCACCGTCTGCTTCACCCTCCTGCCGTCGTCTCGATCACCCTCCTACCACGGCCACAACCCGATCCCCAACGACTTCGTCAAGTTCGACTTGGAGTCCACCCACCTCTCCCACAAACCCACCTACGAGCGCCGGTTCGGGTTGACCAATTACAATTCCGGCGGGAAGGTCCCACTGGGCCTGAAGCGCAAGGGCCTCCGCATCGTCGTCACCGGCGGCGCCGGGTTCGTCGGGTCCCACCTCGTCGACCGCCTCATGGAGCGCGGCGACAGCGTGATCGTCGTCGACAATTTCTTCACCGGAAGGAAGGAGAACGTTCAGCACCATTTTGGGAACCCTAGATTCGAATTAATCCGACACGACGTCGTCGAGCCTCTCCTCCTCGAAGTCGACCAGATCTACCATCTCGCCTGCCCCGCCTCGCCGGTCCATTACAAGTTCAATCCCGTCAAGACTATCATATCCTTTCTAAATAAAAAAACGGGTTCTAGTTTTTCGTGTTTTTTTTTTTTTTTTTTTTTCCGATTTGATTTTGCTGTATGTTTTGTGTTCCTTAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
GDP_Man_Dehyd

Protein Analysis

241

Amino Acids

27.39

Weight (kDa)

9.43

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 122 - 198 3.8e-11 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 124 - 206 4.8e-11 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 528
Acc36I ACCTGC 1 cut(s) 123
Acc65I GGTACC 1 cut(s) 111
AccB1I GGYRCC 2 cut(s) 111, 380
AccI GTMKAC 3 cut(s) 408, 447, 552
AccII CGCG 1 cut(s) 426
AciI CCGC 9 cut(s) 27, 48, 100, 324, 361, 378, 412, 426, 579
AclI AACGTT 1 cut(s) 477
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 2 cut(s) 381, 525
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 121, 418
AgsI TTSAA 1 cut(s) 604
AhdI GACNNNNNGTC 2 cut(s) 256, 524
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 133
AoxI GGCC 5 cut(s) 39, 87, 214, 340, 355
AseI ATTAAT 1 cut(s) 512
Asp718I GGTACC 1 cut(s) 111
AspLEI GCGC 5 cut(s) 132, 294, 351, 383, 426
AspS9I GGNCC 7 cut(s) 40, 87, 331, 340, 355, 396, 589
AsuC2I CCSGG 3 cut(s) 23, 122, 385
AsuHPI GGTGA 5 cut(s) 106, 169, 192, 364, 451
AsuII TTCGAA 1 cut(s) 507
AvaII GGWCC 3 cut(s) 331, 396, 589
BaeGI GKGCMC 1 cut(s) 33
BanI GGYRCC 2 cut(s) 111, 380
BanII GRGCYC 1 cut(s) 8
BccI CCATC 2 cut(s) 167, 573
BceAI ACGGC 3 cut(s) 67, 172, 229
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcnI CCSGG 3 cut(s) 23, 122, 385
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 2 cut(s) 501, 651
BfoI RGCGCY 3 cut(s) 133, 295, 384
BfuAI ACCTGC 1 cut(s) 123
BglII AGATCT 1 cut(s) 558
BisI GCNGC 2 cut(s) 379, 427
BlsI GCNGC 2 cut(s) 380, 428
Bme1390I CCNGG 3 cut(s) 23, 122, 385
Bme18I GGWCC 3 cut(s) 331, 396, 589
BmeRI GACNNNNNGTC 2 cut(s) 256, 524
BmgT120I GGNCC 7 cut(s) 40, 87, 331, 340, 355, 396, 589
BmiI GGNNCC 6 cut(s) 113, 333, 382, 397, 398, 497
BmrFI CCNGG 3 cut(s) 23, 122, 385
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 347
Bpu14I TTCGAA 1 cut(s) 507
BpuMI CCSGG 3 cut(s) 23, 122, 385
BsaBI GATNNNNATC 1 cut(s) 140
BsaHI GRCGYC 2 cut(s) 381, 525
BsaJI CCNNGG 4 cut(s) 22, 83, 90, 211
BsaWI WCCGGW 1 cut(s) 461
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 418
Bse118I RCCGGY 3 cut(s) 294, 374, 586
Bse1I ACTGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 140
BseDI CCNNGG 4 cut(s) 22, 83, 90, 211
BseGI GGATG 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 2 cut(s) 121, 418
BseMI GCAATG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 2 cut(s) 530, 533
BseSI GKGCMC 1 cut(s) 33
BseYI CCCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 5 cut(s) 41, 89, 216, 342, 357
BshNI GGYRCC 2 cut(s) 111, 380
BsiEI CGRYCG 1 cut(s) 412
BsiSI CCGG 8 cut(s) 22, 121, 295, 321, 375, 384, 462, 587
BslFI GGGAC 2 cut(s) 317, 382
BslI CCNNNNNNNGG 2 cut(s) 121, 418
BsmAI GTCTC 1 cut(s) 198
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 2 cut(s) 317, 382
BsnI GGCC 5 cut(s) 41, 89, 216, 342, 357
Bsp119I TTCGAA 1 cut(s) 507
Bsp1286I GDGCHC 2 cut(s) 8, 33
Bsp143I GATC 4 cut(s) 197, 225, 438, 558
BspACI CCGC 9 cut(s) 27, 48, 100, 324, 361, 378, 412, 426, 579
BspANI GGCC 5 cut(s) 41, 89, 216, 342, 357
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 6 cut(s) 113, 333, 382, 397, 398, 497
BspMI ACCTGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 220
BspT104I TTCGAA 1 cut(s) 507
BspT107I GGYRCC 2 cut(s) 111, 380
BsrDI GCAATG 1 cut(s) 153
BsrFI RCCGGY 3 cut(s) 294, 374, 586
BsrI ACTGG 1 cut(s) 342
BssAI RCCGGY 3 cut(s) 294, 374, 586
BssECI CCNNGG 4 cut(s) 22, 83, 90, 211
BssMI GATC 4 cut(s) 197, 225, 438, 558
BssNI GRCGYC 2 cut(s) 381, 525
Bst4CI ACNGT 1 cut(s) 169
BstACI GRCGYC 2 cut(s) 381, 525
BstBI TTCGAA 1 cut(s) 507
BstC8I GCNNGC 3 cut(s) 29, 48, 574
BstDSI CCRYGG 2 cut(s) 83, 211
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 1 cut(s) 141
BstFNI CGCG 1 cut(s) 426
BstH2I RGCGCY 3 cut(s) 133, 295, 384
BstHHI GCGC 5 cut(s) 132, 294, 351, 383, 426
BstKTI GATC 4 cut(s) 200, 228, 441, 561
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 4 cut(s) 197, 225, 438, 558
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 4 cut(s) 47, 348, 432, 578
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 21, 120, 383
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 558
BstYI RGATCY 1 cut(s) 558
BsuRI GGCC 5 cut(s) 41, 89, 216, 342, 357
BtgI CCRYGG 2 cut(s) 83, 211
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 335
BveI ACCTGC 1 cut(s) 123
Cac8I GCNNGC 3 cut(s) 29, 48, 574
CaiI CAGNNNCTG 1 cut(s) 133
CfoI GCGC 5 cut(s) 132, 294, 351, 383, 426
Cfr10I RCCGGY 3 cut(s) 294, 374, 586
Cfr13I GGNCC 7 cut(s) 40, 87, 331, 340, 355, 396, 589
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 418
CviQI GTAC 1 cut(s) 112
DinI GGCGCC 1 cut(s) 382
DpnI GATC 4 cut(s) 199, 227, 440, 560
DpnII GATC 4 cut(s) 197, 225, 438, 558
DriI GACNNNNNGTC 2 cut(s) 256, 524
EaeI YGGCCR 1 cut(s) 214
Eam1105I GACNNNNNGTC 2 cut(s) 256, 524
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 3 cut(s) 331, 396, 589
Eco57I CTGAAG 1 cut(s) 365
Eco91I GGTNACC 1 cut(s) 94
EcoO109I RGGNCCY 3 cut(s) 331, 355, 396
EcoO65I GGTNACC 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 382
EheI GGCGCC 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 1 cut(s) 421
FaiI YATR 3 cut(s) 419, 623, 703
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 317, 382
FatI CATG 1 cut(s) 417
FauI CCCGC 5 cut(s) 20, 55, 107, 317, 586
FblI GTMKAC 3 cut(s) 408, 447, 552
Fnu4HI GCNGC 2 cut(s) 379, 427
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 379, 427
FspBI CTAG 2 cut(s) 501, 651
GlaI GCGC 5 cut(s) 131, 293, 350, 382, 425
GluI GCNGC 2 cut(s) 379, 427
GsaI CCCAGC 1 cut(s) 46
HaeII RGCGCY 3 cut(s) 133, 295, 384
HaeIII GGCC 5 cut(s) 41, 89, 216, 342, 357
HapII CCGG 8 cut(s) 22, 121, 295, 321, 375, 384, 462, 587
HhaI GCGC 5 cut(s) 132, 294, 351, 383, 426
Hin1I GRCGYC 2 cut(s) 381, 525
Hin1II CATG 1 cut(s) 421
Hin6I GCGC 5 cut(s) 130, 292, 349, 381, 424
HinP1I GCGC 5 cut(s) 130, 292, 349, 381, 424
HincII GTYRAC 4 cut(s) 306, 409, 448, 553
HindII GTYRAC 4 cut(s) 306, 409, 448, 553
HinfI GANTC 2 cut(s) 257, 504
HpaII CCGG 8 cut(s) 22, 121, 295, 321, 375, 384, 462, 587
HphI GGTGA 5 cut(s) 106, 169, 192, 364, 451
Hpy166II GTNNAC 5 cut(s) 261, 306, 409, 448, 553
Hpy188I TCNGA 4 cut(s) 10, 55, 518, 686
Hpy188III TCNNGA 2 cut(s) 195, 613
Hpy8I GTNNAC 5 cut(s) 261, 306, 409, 448, 553
HpyAV CCTTC 3 cut(s) 322, 459, 463
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 477, 525
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 348, 432, 578
HpySE526I ACGT 2 cut(s) 477, 525
Hsp92I GRCGYC 2 cut(s) 381, 525
Hsp92II CATG 1 cut(s) 421
HspAI GCGC 5 cut(s) 130, 292, 349, 381, 424
KasI GGCGCC 1 cut(s) 380
KflI GGGWCCC 1 cut(s) 396
KpnI GGTACC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 197, 225, 438, 558
LmnI GCTCC 3 cut(s) 10, 123, 421
LweI GCATC 1 cut(s) 372
MaeI CTAG 2 cut(s) 501, 651
MaeII ACGT 2 cut(s) 477, 525
MaeIII GTNAC 2 cut(s) 94, 370
MalI GATC 4 cut(s) 199, 227, 440, 560
MboI GATC 4 cut(s) 197, 225, 438, 558
MboII GAAGA 1 cut(s) 448
MflI RGATCY 1 cut(s) 558
MhlI GDGCHC 2 cut(s) 8, 33
MluCI AATT 5 cut(s) 310, 316, 451, 509, 718
Mly113I GGCGCC 1 cut(s) 381
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 78, 541
MseI TTAA 2 cut(s) 512, 717
MspI CCGG 8 cut(s) 22, 121, 295, 321, 375, 384, 462, 587
MspR9I CCNGG 3 cut(s) 23, 122, 385
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 4 cut(s) 47, 348, 432, 578
NarI GGCGCC 1 cut(s) 381
NciI CCSGG 3 cut(s) 23, 122, 385
NdeII GATC 4 cut(s) 197, 225, 438, 558
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 6 cut(s) 113, 333, 382, 397, 398, 497
NmuCI GTSAC 2 cut(s) 94, 370
NspV TTCGAA 1 cut(s) 507
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 528
PfeI GAWTC 1 cut(s) 504
PflFI GACNNNGTC 2 cut(s) 239, 527
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 2 cut(s) 380, 428
PleI GAGTC 1 cut(s) 265
PluTI GGCGCC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 2 cut(s) 331, 396
PshBI ATTAAT 1 cut(s) 512
Psp1406I AACGTT 1 cut(s) 477
Psp5II RGGWCCY 2 cut(s) 331, 396
PspEI GGTNACC 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 42
PspN4I GGNNCC 6 cut(s) 113, 333, 382, 397, 398, 497
PspPI GGNCC 7 cut(s) 40, 87, 331, 340, 355, 396, 589
PspPPI RGGWCCY 2 cut(s) 331, 396
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 558
PsyI GACNNNGTC 2 cut(s) 239, 527
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SalI GTCGAC 3 cut(s) 407, 446, 551
SaqAI TTAA 2 cut(s) 512, 717
SatI GCNGC 2 cut(s) 379, 427
Sau3AI GATC 4 cut(s) 197, 225, 438, 558
Sau96I GGNCC 7 cut(s) 40, 87, 331, 340, 355, 396, 589
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 3 cut(s) 23, 122, 385
SduI GDGCHC 2 cut(s) 8, 33
SetI ASST 9 cut(s) 15, 62, 117, 270, 287, 333, 405, 480, 528
SfaNI GCATC 1 cut(s) 372
SfoI GGCGCC 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 507
SgrAI CRCCGGYG 1 cut(s) 374
SinI GGWCC 3 cut(s) 331, 396, 589
Sse9I AATT 5 cut(s) 310, 316, 451, 509, 718
SsiI CCGC 9 cut(s) 27, 48, 100, 324, 361, 378, 412, 426, 579
SspDI GGCGCC 1 cut(s) 380
SspMI CTAG 2 cut(s) 501, 651
StyD4I CCNGG 3 cut(s) 21, 120, 383
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 2 cut(s) 480, 528
TaqI TCGA 8 cut(s) 196, 249, 408, 447, 507, 531, 546, 552
TasI AATT 5 cut(s) 310, 316, 451, 509, 718
TauI GCSGC 2 cut(s) 381, 429
TfiI GAWTC 1 cut(s) 504
Tru1I TTAA 2 cut(s) 512, 717
Tru9I TTAA 2 cut(s) 512, 717
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 2 cut(s) 94, 370
Tsp45I GTSAC 2 cut(s) 94, 370
TspDTI ATGAA 1 cut(s) 130
TspRI CASTG 1 cut(s) 342
Tth111I GACNNNGTC 2 cut(s) 239, 527
VpaK11BI GGWCC 3 cut(s) 331, 396, 589
VspI ATTAAT 1 cut(s) 512
XmiI GTMKAC 3 cut(s) 408, 447, 552
XspI CTAG 2 cut(s) 501, 651
ZraI GACGTC 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.