Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002167

Physical Location & Seq

Genomic Coordinates Forward (+)

56507246 .. 56508110

Gene Structure 865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26384

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGCTCGGAGCTGATATTCCGGGGCGGGCACGACGAGGCCCAGCCCGCTTCCGACACCTACTCGCCGAAACGCCCGAAGCCGTGGGCGTCGGTGACCCGCCCGATTGGGTACCTGCTCCGGGAACAGCGCCTGATTTTCATCCTCGTCGGCATTGCCATCGCCACCGTCTACTTCACCCTCCTGCCGTCGTCTCGATCCCACTCCTACCACGGCCACAACCCGATCCCCAACGACTTCGTCAAGTTCGACTTCGAGTCCACCCACCTCTCCCACAAACCCACCTACGAGCGCCGGTTCGGGCTGACCAATTACAATTCCGGCGGGAAGGTCCCGCTGGGCCTGAAGCGCAAGGGCCTCCGGATCGTCGTCACCGGCGGCGCTGGGTTCGTCGGGTCCCACCTCGTCGACCGCCTCATGGAGCGCGGCGACAGCGTGATCGTCGTCGACAATTTCTTCACCGGAAGGAAGGAGAACGTTCAGCACCATTTTGGGAACCCTAGATTCGAATTAATCCGACACGACGTCGTCGAGCCTCTCCTCCTCGAAGTCGACCAGATCTACCATCTCGCCTGCCCCGCCTCGCCGGTCCATTACAAGTTCAATCCCGTCAAGACTATCATATCCTTTCTAAATAAAAAACGGGTTCTAGTTTTTTTTTCCGATTTGATTTTCTGTATGTTTTGTGTTTCCTTAATTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

234

Amino Acids

26.6

Weight (kDa)

9.49

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	122 - 200	2.8e-11	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	124 - 206	4.4e-11	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47650 AT2G47650 AT3G62830 AT3G62830
fragaria_vesca	FvH4_2g25720 FvH4_2g25720 FvH4_2g25720 FvH4_4g18410
malus_domestica	MD00G1128000.v1.1 MD03G1288200.v1.1 MD11G1309900.v1.1 MD16G1167000.v1.1
prunus_persica	Prupe.1G134000_v2.0.a1 Prupe.8G261400_v2.0.a1 Prupe.8G261400_v2.0.a1
pyrus_communis	pycom16g14100
rosa_chinensis	RchiOBHm_Chr4g0422861 RchiOBHm_Chr6g0294001 RchiOBHm_Chr6g0294011
rosa_laevigata	RLG00000007599 RLG00000011908
rosa_multiflora	Rmu_co8291503.1_g000001 Rmu_sc0000830.1_g000041 Rmu_sc0002321.1_g000009 Rmu_sc0003941.1_g000011 Rmu_sc0004849.1_g000008 Rmu_sc0005126.1_g000004 Rmu_sc0007876.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364720 Rroxscaffold_7G00173730
rosa_rugosa	Rorug04G0181900 Rorug06G0240000
rosa_samantha	Rh4AG242300 Rh4BG245900 Rh4CG256200 Rh4DG240900 Rh6AG353100 Rh6BG360000 Rh6CG367300 Rh6DG353700 Rh6DG353800
rosa_wichuraiana	Rw4G020870 Rw6G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	528
Acc36I	ACCTGC	1 cut(s)	123
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	111
AccI	GTMKAC	4 cut(s)	171, 408, 447, 552
AccII	CGCG	1 cut(s)	426
AccIII	TCCGGA	1 cut(s)	360
AciI	CCGC	9 cut(s)	27, 48, 100, 324, 335, 378, 412, 426, 579
AclI	AACGTT	1 cut(s)	477
AclWI	GGATC	3 cut(s)	192, 220, 371
AcoI	YGGCCR	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	2 cut(s)	89, 525
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	121, 418
AgsI	TTSAA	1 cut(s)	604
AhdI	GACNNNNNGTC	2 cut(s)	256, 524
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	3 cut(s)	192, 220, 371
AlwNI	CAGNNNCTG	1 cut(s)	133
Aor13HI	TCCGGA	1 cut(s)	360
AoxI	GGCC	4 cut(s)	39, 214, 340, 355
AseI	ATTAAT	1 cut(s)	512
Asp718I	GGTACC	1 cut(s)	111
AspLEI	GCGC	5 cut(s)	132, 294, 351, 383, 426
AspS9I	GGNCC	6 cut(s)	40, 331, 340, 355, 396, 589
AsuC2I	CCSGG	2 cut(s)	23, 122
AsuHPI	GGTGA	4 cut(s)	106, 169, 364, 451
AsuII	TTCGAA	1 cut(s)	507
AvaII	GGWCC	3 cut(s)	331, 396, 589
BaeGI	GKGCMC	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	8
BccI	CCATC	2 cut(s)	167, 573
BceAI	ACGGC	3 cut(s)	67, 172, 229
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BcnI	CCSGG	2 cut(s)	23, 122
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	501, 650
BfoI	RGCGCY	3 cut(s)	133, 295, 384
BfuAI	ACCTGC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	2 cut(s)	379, 427
BlsI	GCNGC	2 cut(s)	380, 428
Bme1390I	CCNGG	2 cut(s)	23, 122
Bme18I	GGWCC	3 cut(s)	331, 396, 589
BmeRI	GACNNNNNGTC	2 cut(s)	256, 524
BmgT120I	GGNCC	6 cut(s)	40, 331, 340, 355, 396, 589
BmiI	GGNNCC	5 cut(s)	113, 333, 397, 398, 497
BmrFI	CCNGG	2 cut(s)	23, 122
Bpu14I	TTCGAA	1 cut(s)	507
BpuMI	CCSGG	2 cut(s)	23, 122
BsaBI	GATNNNNATC	1 cut(s)	140
BsaHI	GRCGYC	2 cut(s)	89, 525
BsaJI	CCNNGG	3 cut(s)	22, 83, 211
BsaWI	WCCGGW	2 cut(s)	360, 461
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 418
Bse118I	RCCGGY	3 cut(s)	294, 374, 586
Bse3DI	GCAATG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	140
BseAI	TCCGGA	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	22, 83, 211
BseGI	GGATG	1 cut(s)	141
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	121, 418
BseMI	GCAATG	1 cut(s)	153
BseRI	GAGGAG	2 cut(s)	530, 533
BseSI	GKGCMC	1 cut(s)	33
BseYI	CCCAGC	3 cut(s)	42, 337, 383
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	412
BshFI	GGCC	4 cut(s)	41, 216, 342, 357
BshNI	GGYRCC	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	412
BsiSI	CCGG	8 cut(s)	22, 121, 295, 321, 361, 375, 462, 587
BslFI	GGGAC	2 cut(s)	317, 382
BslI	CCNNNNNNNGG	2 cut(s)	121, 418
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	317, 382
BsnI	GGCC	4 cut(s)	41, 216, 342, 357
Bsp119I	TTCGAA	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	8, 33
Bsp13I	TCCGGA	1 cut(s)	360
Bsp143I	GATC	5 cut(s)	197, 225, 363, 438, 558
BspACI	CCGC	9 cut(s)	27, 48, 100, 324, 335, 378, 412, 426, 579
BspANI	GGCC	4 cut(s)	41, 216, 342, 357
BspEI	TCCGGA	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	5 cut(s)	113, 333, 397, 398, 497
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	3 cut(s)	192, 220, 371
BspT104I	TTCGAA	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	3 cut(s)	294, 374, 586
BssAI	RCCGGY	3 cut(s)	294, 374, 586
BssECI	CCNNGG	3 cut(s)	22, 83, 211
BssMI	GATC	5 cut(s)	197, 225, 363, 438, 558
BssNI	GRCGYC	2 cut(s)	89, 525
Bst4CI	ACNGT	1 cut(s)	169
BstACI	GRCGYC	2 cut(s)	89, 525
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	29, 48, 574
BstDSI	CCRYGG	2 cut(s)	83, 211
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	426
BstH2I	RGCGCY	3 cut(s)	133, 295, 384
BstHHI	GCGC	5 cut(s)	132, 294, 351, 383, 426
BstKTI	GATC	5 cut(s)	200, 228, 366, 441, 561
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	5 cut(s)	197, 225, 363, 438, 558
BstMCI	CGRYCG	1 cut(s)	412
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 348, 432, 578
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	21, 120
BstSLI	GKGCMC	1 cut(s)	33
BstUI	CGCG	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BsuRI	GGCC	4 cut(s)	41, 216, 342, 357
BtgI	CCRYGG	2 cut(s)	83, 211
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	3 cut(s)	29, 48, 574
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	5 cut(s)	132, 294, 351, 383, 426
Cfr10I	RCCGGY	3 cut(s)	294, 374, 586
Cfr13I	GGNCC	6 cut(s)	40, 331, 340, 355, 396, 589
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	1 cut(s)	112
DpnI	GATC	5 cut(s)	199, 227, 365, 440, 560
DpnII	GATC	5 cut(s)	197, 225, 363, 438, 558
DriI	GACNNNNNGTC	2 cut(s)	256, 524
EaeI	YGGCCR	1 cut(s)	214
Eam1105I	GACNNNNNGTC	2 cut(s)	256, 524
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	3 cut(s)	331, 396, 589
Eco57I	CTGAAG	1 cut(s)	365
Eco91I	GGTNACC	1 cut(s)	94
EcoO109I	RGGNCCY	3 cut(s)	331, 355, 396
EcoO65I	GGTNACC	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	421
FaiI	YATR	3 cut(s)	419, 623, 680
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	2 cut(s)	317, 382
FatI	CATG	1 cut(s)	417
FauI	CCCGC	6 cut(s)	20, 55, 107, 317, 342, 586
FblI	GTMKAC	4 cut(s)	171, 408, 447, 552
Fnu4HI	GCNGC	2 cut(s)	379, 427
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	379, 427
FspBI	CTAG	2 cut(s)	501, 650
GlaI	GCGC	5 cut(s)	131, 293, 350, 382, 425
GluI	GCNGC	2 cut(s)	379, 427
GsaI	CCCAGC	3 cut(s)	46, 341, 387
HaeII	RGCGCY	3 cut(s)	133, 295, 384
HaeIII	GGCC	4 cut(s)	41, 216, 342, 357
HapII	CCGG	8 cut(s)	22, 121, 295, 321, 361, 375, 462, 587
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	5 cut(s)	132, 294, 351, 383, 426
Hin1I	GRCGYC	2 cut(s)	89, 525
Hin1II	CATG	1 cut(s)	421
Hin6I	GCGC	5 cut(s)	130, 292, 349, 381, 424
HinP1I	GCGC	5 cut(s)	130, 292, 349, 381, 424
HincII	GTYRAC	3 cut(s)	409, 448, 553
HindII	GTYRAC	3 cut(s)	409, 448, 553
HinfI	GANTC	2 cut(s)	257, 504
HpaII	CCGG	8 cut(s)	22, 121, 295, 321, 361, 375, 462, 587
HphI	GGTGA	4 cut(s)	106, 169, 364, 451
Hpy166II	GTNNAC	5 cut(s)	172, 261, 409, 448, 553
Hpy188I	TCNGA	4 cut(s)	10, 55, 518, 664
Hpy188III	TCNNGA	3 cut(s)	195, 361, 613
Hpy8I	GTNNAC	5 cut(s)	172, 261, 409, 448, 553
HpyAV	CCTTC	3 cut(s)	322, 459, 463
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	2 cut(s)	477, 525
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 348, 432, 578
HpySE526I	ACGT	2 cut(s)	477, 525
Hsp92I	GRCGYC	2 cut(s)	89, 525
Hsp92II	CATG	1 cut(s)	421
HspAI	GCGC	5 cut(s)	130, 292, 349, 381, 424
KflI	GGGWCCC	1 cut(s)	396
Kpn2I	TCCGGA	1 cut(s)	360
KpnI	GGTACC	1 cut(s)	115
Kzo9I	GATC	5 cut(s)	197, 225, 363, 438, 558
LmnI	GCTCC	3 cut(s)	10, 123, 421
MaeI	CTAG	2 cut(s)	501, 650
MaeII	ACGT	2 cut(s)	477, 525
MaeIII	GTNAC	2 cut(s)	94, 370
MalI	GATC	5 cut(s)	199, 227, 365, 440, 560
MboI	GATC	5 cut(s)	197, 225, 363, 438, 558
MboII	GAAGA	1 cut(s)	448
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	2 cut(s)	8, 33
MluCI	AATT	5 cut(s)	310, 316, 451, 509, 696
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	78, 541
MroI	TCCGGA	1 cut(s)	360
MseI	TTAA	2 cut(s)	512, 695
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	8 cut(s)	22, 121, 295, 321, 361, 375, 462, 587
MspR9I	CCNGG	2 cut(s)	23, 122
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	4 cut(s)	47, 348, 432, 578
NciI	CCSGG	2 cut(s)	23, 122
NdeII	GATC	5 cut(s)	197, 225, 363, 438, 558
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	5 cut(s)	113, 333, 397, 398, 497
NmuCI	GTSAC	2 cut(s)	94, 370
NspV	TTCGAA	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 528
PfeI	GAWTC	1 cut(s)	504
PflFI	GACNNNGTC	2 cut(s)	239, 527
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	380, 428
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PpuMI	RGGWCCY	2 cut(s)	331, 396
PshBI	ATTAAT	1 cut(s)	512
Psp1406I	AACGTT	1 cut(s)	477
Psp5II	RGGWCCY	2 cut(s)	331, 396
PspEI	GGTNACC	1 cut(s)	94
PspFI	CCCAGC	3 cut(s)	42, 337, 383
PspN4I	GGNNCC	5 cut(s)	113, 333, 397, 398, 497
PspPI	GGNCC	6 cut(s)	40, 331, 340, 355, 396, 589
PspPPI	RGGWCCY	2 cut(s)	331, 396
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	558
PsyI	GACNNNGTC	2 cut(s)	239, 527
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SalI	GTCGAC	3 cut(s)	407, 446, 551
SaqAI	TTAA	2 cut(s)	512, 695
SatI	GCNGC	2 cut(s)	379, 427
Sau3AI	GATC	5 cut(s)	197, 225, 363, 438, 558
Sau96I	GGNCC	6 cut(s)	40, 331, 340, 355, 396, 589
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	23, 122
SduI	GDGCHC	2 cut(s)	8, 33
SetI	ASST	9 cut(s)	15, 62, 117, 270, 287, 333, 405, 480, 528
SfuI	TTCGAA	1 cut(s)	507
SgrAI	CRCCGGYG	1 cut(s)	374
SinI	GGWCC	3 cut(s)	331, 396, 589
Sse9I	AATT	5 cut(s)	310, 316, 451, 509, 696
SsiI	CCGC	9 cut(s)	27, 48, 100, 324, 335, 378, 412, 426, 579
SspMI	CTAG	2 cut(s)	501, 650
StyD4I	CCNGG	2 cut(s)	21, 120
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	2 cut(s)	480, 528
TaqI	TCGA	9 cut(s)	196, 249, 255, 408, 447, 507, 531, 546, 552
TasI	AATT	5 cut(s)	310, 316, 451, 509, 696
TauI	GCSGC	2 cut(s)	381, 429
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	2 cut(s)	512, 695
Tru9I	TTAA	2 cut(s)	512, 695
TseFI	GTSAC	2 cut(s)	94, 370
Tsp45I	GTSAC	2 cut(s)	94, 370
TspDTI	ATGAA	1 cut(s)	130
Tth111I	GACNNNGTC	2 cut(s)	239, 527
VpaK11BI	GGWCC	3 cut(s)	331, 396, 589
VspI	ATTAAT	1 cut(s)	512
XmiI	GTMKAC	4 cut(s)	171, 408, 447, 552
XspI	CTAG	2 cut(s)	501, 650
ZraI	GACGTC	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.