Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002167

Physical Location & Seq

Genomic Coordinates Reverse (-)

42320095 .. 42323729

Gene Structure 3635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1309900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCACAAAACCAATGTGGTGGGGACTCTGAATATGCTGGGTCTTGCAAAGAGGATCGGAGCGCGGTTCTTGCTGACGAGCACCAGCGAGGTGTACGGCGATCCTCTGCAGCACCCGCAGGTTGAAACCTACTGGGGCAACGTTAATCCAATCGGTGTCCGAAGCTGTTACGACGAGGGAAAACGTACGGCCGAGACATTGACCATGGACTACCACAGAGGAGCTGGTGTTGAGGTAAGGATTGCTAGGATATTTAACACTTACGGGCCGAGAATGTGCATAGATGACGGCCGCGTTGTTAGTAACTTTGTTGCTCAGGCGTTGAGGAAAGAGCCGATGACGGTTTATGGTGACGGGAAGCAAACGAGGAGTTTCCAATATGTTTCCGATCTGGTGGAAGGTCTGATGCGTCTGATGGAAGGTGAACATGTGGGACCTTTCAATCTCGGAAACCCGGGTGAATTCACCATGCTCGAACTTGCAAAGGTGGTGCAAGAAACAATCGACCCAGAAGCAAAAATCGAGTACAGGCCGAACACAGAGGATGACCCCCACAAGAGGAAGCCTGATATCACAAAGGCCAAAGACTTACTCGGCTGGCAACCAAAGGTGTCCCTTCAAAAGGGTCTCCCTCTCATGGTCTCTGACTTCAGGAAACGCATCTTCGGTGACCACCATGAAGCTGACTCTACCACCGCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

235

Amino Acids

26.34

Weight (kDa)

6.66

Isoelectric Point (pI)

28.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	2 - 150	2.2e-29	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	3 - 211	4e-38	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47650 AT2G47650 AT3G62830 AT3G62830
fragaria_vesca	FvH4_2g25720 FvH4_2g25720 FvH4_2g25720 FvH4_4g18410
malus_domestica	MD00G1128000.v1.1 MD03G1288200.v1.1 MD11G1309900.v1.1 MD16G1167000.v1.1
prunus_persica	Prupe.1G134000_v2.0.a1 Prupe.8G261400_v2.0.a1 Prupe.8G261400_v2.0.a1
pyrus_communis	pycom16g14100
rosa_chinensis	RchiOBHm_Chr4g0422861 RchiOBHm_Chr6g0294001 RchiOBHm_Chr6g0294011
rosa_laevigata	RLG00000007599 RLG00000011908
rosa_multiflora	Rmu_co8291503.1_g000001 Rmu_sc0000830.1_g000041 Rmu_sc0002321.1_g000009 Rmu_sc0003941.1_g000011 Rmu_sc0004849.1_g000008 Rmu_sc0005126.1_g000004 Rmu_sc0007876.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364720 Rroxscaffold_7G00173730
rosa_rugosa	Rorug04G0181900 Rorug06G0240000
rosa_samantha	Rh4AG242300 Rh4BG245900 Rh4CG256200 Rh4DG240900 Rh6AG353100 Rh6BG360000 Rh6CG367300 Rh6DG353700 Rh6DG353800
rosa_wichuraiana	Rw4G020870 Rw6G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccII	CGCG	2 cut(s)	64, 294
AciI	CCGC	4 cut(s)	64, 116, 292, 696
AclI	AACGTT	1 cut(s)	141
AclWI	GGATC	2 cut(s)	62, 95
AcoI	YGGCCR	2 cut(s)	189, 289
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	634
AfaI	GTAC	3 cut(s)	95, 187, 527
AfiI	CCNNNNNNNGG	3 cut(s)	558, 622, 637
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	3 cut(s)	125, 442, 620
AluBI	AGCT	3 cut(s)	165, 224, 683
AluI	AGCT	3 cut(s)	165, 224, 683
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	3 cut(s)	188, 632, 646
AlwI	GGATC	2 cut(s)	62, 95
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	5 cut(s)	189, 266, 289, 530, 579
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	266, 434
AsuC2I	CCSGG	2 cut(s)	455, 456
AsuHPI	GGTGA	5 cut(s)	362, 434, 457, 470, 680
AvaI	CYCGRG	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	3 cut(s)	112, 204, 304
BcnI	CCSGG	2 cut(s)	455, 456
BcoDI	GTCTC	3 cut(s)	188, 632, 646
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	2 cut(s)	110, 292
BlsI	GCNGC	2 cut(s)	111, 293
Bme1390I	CCNGG	2 cut(s)	455, 456
Bme18I	GGWCC	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	266, 434
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	2 cut(s)	455, 456
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	2 cut(s)	396, 669
BmuI	ACTGGG	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	315
BpuMI	CCSGG	2 cut(s)	455, 456
BsaI	GGTCTC	2 cut(s)	632, 646
BsaJI	CCNNGG	2 cut(s)	204, 454
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	3 cut(s)	558, 622, 637
Bse1I	ACTGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	204, 454
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	3 cut(s)	558, 622, 637
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	2 cut(s)	234, 382
BseX3I	CGGCCG	2 cut(s)	189, 289
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	37
Bsh1236I	CGCG	2 cut(s)	64, 294
Bsh1285I	CGRYCG	2 cut(s)	192, 292
BshFI	GGCC	5 cut(s)	191, 268, 291, 532, 581
BsiEI	CGRYCG	2 cut(s)	192, 292
BsiHKAI	GWGCWC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	455
BsiWI	CGTACG	1 cut(s)	185
BslFI	GGGAC	3 cut(s)	37, 447, 598
BslI	CCNNNNNNNGG	3 cut(s)	558, 622, 637
BsmAI	GTCTC	3 cut(s)	188, 632, 646
BsmFI	GGGAC	3 cut(s)	37, 447, 598
BsnI	GGCC	5 cut(s)	191, 268, 291, 532, 581
Bso31I	GGTCTC	2 cut(s)	632, 646
BsoBI	CYCGRG	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	54, 100, 388
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	4 cut(s)	64, 116, 292, 696
BspANI	GGCC	5 cut(s)	191, 268, 291, 532, 581
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	2 cut(s)	64, 294
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	62, 95
BspTNI	GGTCTC	2 cut(s)	632, 646
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	204, 454
BssMI	GATC	3 cut(s)	54, 100, 388
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	204
BstEII	GGTNACC	1 cut(s)	668
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	2 cut(s)	64, 294
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	3 cut(s)	57, 103, 391
BstMAI	GTCTC	3 cut(s)	188, 632, 646
BstMBI	GATC	3 cut(s)	54, 100, 388
BstMCI	CGRYCG	2 cut(s)	192, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 115
BstNSI	RCATGY	1 cut(s)	431
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	453, 454
BstSFI	CTRYAG	1 cut(s)	107
BstUI	CGCG	2 cut(s)	64, 294
BstV1I	GCAGC	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstZI	CGGCCG	2 cut(s)	189, 289
BsuRI	GGCC	5 cut(s)	191, 268, 291, 532, 581
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	550
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	599
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	266, 434
Cfr9I	CCCGGG	1 cut(s)	454
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	3 cut(s)	94, 186, 526
CviAII	CATG	5 cut(s)	205, 428, 469, 637, 677
CviQI	GTAC	3 cut(s)	94, 186, 526
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	3 cut(s)	56, 102, 390
DpnII	GATC	3 cut(s)	54, 100, 388
EaeI	YGGCCR	2 cut(s)	189, 289
EagI	CGGCCG	2 cut(s)	189, 289
EclXI	CGGCCG	2 cut(s)	189, 289
Eco130I	CCWWGG	1 cut(s)	204
Eco31I	GGTCTC	2 cut(s)	632, 646
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	434
Eco52I	CGGCCG	2 cut(s)	189, 289
Eco57I	CTGAAG	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	454
Eco91I	GGTNACC	1 cut(s)	668
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	434
EcoO65I	GGTNACC	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	461
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	5 cut(s)	208, 431, 472, 640, 680
FaiI	YATR	9 cut(s)	35, 206, 281, 348, 381, 429, 470, 638, 678
FaqI	GGGAC	3 cut(s)	37, 447, 598
FatI	CATG	5 cut(s)	204, 427, 468, 636, 676
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	110, 292
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	2 cut(s)	110, 292
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	2 cut(s)	110, 292
GsaI	CCCAGC	1 cut(s)	41
HaeIII	GGCC	5 cut(s)	191, 268, 291, 532, 581
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	5 cut(s)	208, 431, 472, 640, 680
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	25, 686
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	5 cut(s)	362, 434, 457, 470, 680
Hpy166II	GTNNAC	2 cut(s)	94, 425
Hpy188I	TCNGA	8 cut(s)	30, 59, 161, 388, 405, 414, 449, 646
Hpy188III	TCNNGA	1 cut(s)	652
Hpy8I	GTNNAC	2 cut(s)	94, 425
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	392, 413, 626
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	2 cut(s)	141, 184
HpyCH4V	TGCA	6 cut(s)	4, 47, 109, 279, 482, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 115
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	2 cut(s)	141, 184
Hsp92II	CATG	5 cut(s)	208, 431, 472, 640, 680
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	3 cut(s)	54, 100, 388
LmnI	GCTCC	2 cut(s)	59, 221
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	2 cut(s)	396, 669
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	2 cut(s)	141, 184
MaeIII	GTNAC	4 cut(s)	167, 302, 350, 668
MalI	GATC	3 cut(s)	56, 102, 390
MboI	GATC	3 cut(s)	54, 100, 388
MboII	GAAGA	1 cut(s)	655
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	461
MlyI	GAGTC	2 cut(s)	19, 680
MseI	TTAA	2 cut(s)	144, 255
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	455, 456
MvnI	CGCG	2 cut(s)	64, 294
MwoI	GCNNNNNNNGC	2 cut(s)	70, 115
NciI	CCSGG	2 cut(s)	455, 456
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	3 cut(s)	54, 100, 388
NlaIII	CATG	5 cut(s)	208, 431, 472, 640, 680
NlaIV	GGNNCC	1 cut(s)	435
NmeAIII	GCCGAG	3 cut(s)	217, 294, 573
NmuCI	GTSAC	2 cut(s)	350, 668
NspI	RCATGY	1 cut(s)	431
PciI	ACATGT	1 cut(s)	427
Pfl23II	CGTACG	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	111, 293
PleI	GAGTC	2 cut(s)	19, 680
PpsI	GAGTC	2 cut(s)	19, 680
PpuMI	RGGWCCY	1 cut(s)	434
PscI	ACATGT	1 cut(s)	427
Psp1406I	AACGTT	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	434
PspEI	GGTNACC	1 cut(s)	668
PspFI	CCCAGC	1 cut(s)	37
PspLI	CGTACG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	2 cut(s)	266, 434
PspPPI	RGGWCCY	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	111
RsaI	GTAC	3 cut(s)	95, 187, 527
RsaNI	GTAC	3 cut(s)	94, 186, 526
SaqAI	TTAA	2 cut(s)	144, 255
SatI	GCNGC	2 cut(s)	110, 292
Sau3AI	GATC	3 cut(s)	54, 100, 388
Sau96I	GGNCC	2 cut(s)	266, 434
SchI	GAGTC	2 cut(s)	19, 680
ScrFI	CCNGG	2 cut(s)	455, 456
SduI	GDGCHC	1 cut(s)	83
SfaNI	GCATC	2 cut(s)	396, 669
SfcI	CTRYAG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	434
SmaI	CCCGGG	1 cut(s)	456
Sse9I	AATT	1 cut(s)	461
SsiI	CCGC	4 cut(s)	64, 116, 292, 696
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	453, 454
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	2 cut(s)	144, 187
TaqI	TCGA	3 cut(s)	474, 504, 522
TasI	AATT	1 cut(s)	461
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	144, 255
Tru9I	TTAA	2 cut(s)	144, 255
TseFI	GTSAC	2 cut(s)	350, 668
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	2 cut(s)	350, 668
TspDTI	ATGAA	1 cut(s)	693
TspMI	CCCGGG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	434
XagI	CCTNNNNNAGG	1 cut(s)	620
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmaI	CCCGGG	1 cut(s)	454
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.