Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004849.1

Orthogroup ID

OG0002167

Physical Location & Seq

Genomic Coordinates Reverse (-)

40312 .. 41834

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004849.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgttaatggttggggtccttgacttggtggttcacaagacgaatgtggtgggcacattgaacatgcttggactagccaaaagggtgggtgcacgcttcttgctcacaagcaccagtgaggtctacggtgaccctctgcagcatccccaggttgagacctactggggcaatgtcaaccccatcggtgtaaggagttgttatgatgagggaaagcgcacagcagagacattgagcatggactatcatagaggccttggcattgaggtgagaattgccagaattttcaatacttacggaccacgaatgtgcattgatgatggccgtgttgttagcaattttgtagctcaggtggagggactaatgcggctgatggaagggaatcacgtaggacctttcaatcttggaaatcctggtgaattcaccatgctagaacttgctcaggttgtacaagacaccatagaccccaatgcaaagatagagttcaggccaaacacagaagatgacccccataagaggaagccagacatttcaaaggcaaaagagcttctcggatgggagcctactgtgtctctcagaaaaggacttcctctcatggtcactgactttagacagcgcatatttggcgacgccaaggacagcattgcagctgaggcagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009987 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

219

Amino Acids

24.35

Weight (kDa)

5.97

Isoelectric Point (pI)

24.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47650 AT2G47650 AT3G62830 AT3G62830
fragaria_vesca	FvH4_2g25720 FvH4_2g25720 FvH4_2g25720 FvH4_4g18410
malus_domestica	MD00G1128000.v1.1 MD03G1288200.v1.1 MD11G1309900.v1.1 MD16G1167000.v1.1
prunus_persica	Prupe.1G134000_v2.0.a1 Prupe.8G261400_v2.0.a1 Prupe.8G261400_v2.0.a1
pyrus_communis	pycom16g14100
rosa_chinensis	RchiOBHm_Chr4g0422861 RchiOBHm_Chr6g0294001 RchiOBHm_Chr6g0294011
rosa_laevigata	RLG00000007599 RLG00000011908
rosa_multiflora	Rmu_co8291503.1_g000001 Rmu_sc0000830.1_g000041 Rmu_sc0002321.1_g000009 Rmu_sc0003941.1_g000011 Rmu_sc0004849.1_g000008 Rmu_sc0005126.1_g000004 Rmu_sc0007876.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364720 Rroxscaffold_7G00173730
rosa_rugosa	Rorug04G0181900 Rorug06G0240000
rosa_samantha	Rh4AG242300 Rh4BG245900 Rh4CG256200 Rh4DG240900 Rh6AG353100 Rh6BG360000 Rh6CG367300 Rh6DG353700 Rh6DG353800
rosa_wichuraiana	Rw4G020870 Rw6G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	279, 416
AcyI	GRCGYC	1 cut(s)	627
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	2 cut(s)	25, 513
AgsI	TTSAA	4 cut(s)	61, 286, 397, 531
AjnI	CCWGG	2 cut(s)	147, 409
AleI	CACNNNNGTG	1 cut(s)	304
AluBI	AGCT	4 cut(s)	344, 544, 647, 656
AluI	AGCT	4 cut(s)	344, 544, 647, 656
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	3 cut(s)	149, 218, 573
Alw44I	GTGCAC	1 cut(s)	90
AoxI	GGCC	3 cut(s)	250, 319, 485
ApaLI	GTGCAC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	139, 644, 653
ApoI	RAATTY	2 cut(s)	279, 416
AspLEI	GCGC	2 cut(s)	216, 615
AspS9I	GGNCC	3 cut(s)	16, 296, 389
AsuHPI	GGTGA	4 cut(s)	140, 277, 412, 425
AvaII	GGWCC	3 cut(s)	16, 296, 389
BaeGI	GKGCMC	2 cut(s)	56, 94
Bbv12I	GWGCWC	1 cut(s)	94
BbvCI	CCTCAGC	1 cut(s)	648
BbvI	GCAGC	2 cut(s)	151, 656
BccI	CCATC	4 cut(s)	188, 311, 364, 546
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	2 cut(s)	149, 411
BcoDI	GTCTC	3 cut(s)	149, 218, 573
BfaI	CTAG	2 cut(s)	74, 428
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	4 cut(s)	140, 365, 645, 654
BlsI	GCNGC	4 cut(s)	141, 366, 646, 655
Bme1390I	CCNGG	2 cut(s)	149, 411
Bme18I	GGWCC	3 cut(s)	16, 296, 389
BmgT120I	GGNCC	3 cut(s)	16, 296, 389
BmiI	GGNNCC	2 cut(s)	17, 558
BmrFI	CCNGG	2 cut(s)	149, 411
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	172
Bpu10I	CCTNAGC	3 cut(s)	345, 438, 648
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	147, 253, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 513
Bse1I	ACTGG	2 cut(s)	114, 167
Bse3DI	GCAATG	2 cut(s)	175, 639
BseBI	CCWGG	2 cut(s)	149, 411
BseDI	CCNNGG	3 cut(s)	147, 253, 630
BseGI	GGATG	2 cut(s)	142, 557
BseLI	CCNNNNNNNGG	2 cut(s)	25, 513
BseMI	GCAATG	2 cut(s)	175, 639
BseMII	CTCAG	4 cut(s)	359, 452, 586, 639
BseNI	ACTGG	2 cut(s)	114, 167
BseSI	GKGCMC	2 cut(s)	56, 94
BseXI	GCAGC	2 cut(s)	151, 656
BshFI	GGCC	3 cut(s)	252, 321, 487
BsiHKAI	GWGCWC	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	25, 513
BsmAI	GTCTC	3 cut(s)	149, 218, 573
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	252, 321, 487
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	56, 94
Bsp1407I	TGTACA	1 cut(s)	445
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	3 cut(s)	252, 321, 487
BspCNI	CTCAG	4 cut(s)	358, 451, 585, 640
BspLI	GGNNCC	2 cut(s)	17, 558
BspMAI	CTGCAG	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	175, 639
BsrGI	TGTACA	1 cut(s)	445
BsrI	ACTGG	2 cut(s)	114, 167
BssECI	CCNNGG	3 cut(s)	147, 253, 630
BssNI	GRCGYC	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	253, 630
Bst2UI	CCWGG	2 cut(s)	149, 411
Bst4CI	ACNGT	2 cut(s)	128, 565
BstACI	GRCGYC	1 cut(s)	627
BstAUI	TGTACA	1 cut(s)	445
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	4 cut(s)	345, 438, 572, 648
BstEII	GGTNACC	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	142, 557
BstHHI	GCGC	2 cut(s)	216, 615
BstMAI	GTCTC	3 cut(s)	149, 218, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	621, 650, 653
BstNI	CCWGG	2 cut(s)	149, 411
BstNSI	RCATGY	1 cut(s)	67
BstPI	GGTNACC	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	147, 409
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	2 cut(s)	56, 94
BstV1I	GCAGC	2 cut(s)	151, 656
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	3 cut(s)	252, 321, 487
BtsCI	GGATG	2 cut(s)	142, 557
BtsIMutI	CAGTG	2 cut(s)	121, 597
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	2 cut(s)	216, 615
Cfr13I	GGNCC	3 cut(s)	16, 296, 389
CseI	GACGC	1 cut(s)	635
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	4 cut(s)	64, 235, 424, 592
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	4 cut(s)	345, 438, 572, 648
EaeI	YGGCCR	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	253, 630
Eco147I	AGGCCT	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	3 cut(s)	16, 296, 389
Eco91I	GGTNACC	1 cut(s)	128
EcoO109I	RGGNCCY	2 cut(s)	16, 389
EcoO65I	GGTNACC	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	147, 409
EcoT14I	CCWWGG	2 cut(s)	253, 630
ErhI	CCWWGG	2 cut(s)	253, 630
FaeI	CATG	4 cut(s)	67, 238, 427, 595
FaiI	YATR	9 cut(s)	65, 201, 236, 246, 425, 458, 510, 593, 617
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	4 cut(s)	63, 234, 423, 591
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	4 cut(s)	140, 365, 645, 654
FokI	GGATG	2 cut(s)	129, 564
Fsp4HI	GCNGC	4 cut(s)	140, 365, 645, 654
FspBI	CTAG	2 cut(s)	74, 428
GlaI	GCGC	2 cut(s)	215, 614
GluI	GCNGC	4 cut(s)	140, 365, 645, 654
HaeIII	GGCC	3 cut(s)	252, 321, 487
HgaI	GACGC	1 cut(s)	635
HhaI	GCGC	2 cut(s)	216, 615
Hin1I	GRCGYC	1 cut(s)	627
Hin1II	CATG	4 cut(s)	67, 238, 427, 595
Hin6I	GCGC	2 cut(s)	214, 613
HinP1I	GCGC	2 cut(s)	214, 613
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	379
HphI	GGTGA	4 cut(s)	140, 277, 412, 425
Hpy166II	GTNNAC	4 cut(s)	34, 92, 124, 175
Hpy188I	TCNGA	2 cut(s)	551, 575
Hpy8I	GTNNAC	4 cut(s)	34, 92, 124, 175
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	2 cut(s)	128, 565
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	5 cut(s)	92, 139, 309, 470, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	621, 650, 653
HpyF3I	CTNAG	4 cut(s)	345, 438, 572, 648
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	627
Hsp92II	CATG	4 cut(s)	67, 238, 427, 595
HspAI	GCGC	2 cut(s)	214, 613
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	2 cut(s)	151, 656
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	74, 428
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	128, 595
MboII	GAAGA	1 cut(s)	509
MhlI	GDGCHC	2 cut(s)	56, 94
MluCI	AATT	4 cut(s)	270, 279, 334, 416
MnlI	CCTC	9 cut(s)	112, 144, 199, 242, 256, 346, 507, 597, 643
MseI	TTAA	2 cut(s)	5, 658
MslI	CAYNNNNRTG	2 cut(s)	263, 304
MspA1I	CMGCKG	1 cut(s)	647
MspR9I	CCNGG	2 cut(s)	149, 411
MvaI	CCWGG	2 cut(s)	149, 411
MwoI	GCNNNNNNNGC	3 cut(s)	621, 650, 653
NlaIII	CATG	4 cut(s)	67, 238, 427, 595
NlaIV	GGNNCC	2 cut(s)	17, 558
NmuCI	GTSAC	2 cut(s)	128, 595
NspI	RCATGY	1 cut(s)	67
OliI	CACNNNNGTG	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	4 cut(s)	141, 366, 646, 655
Ppu21I	YACGTR	1 cut(s)	385
PpuMI	RGGWCCY	2 cut(s)	16, 389
Psp5II	RGGWCCY	2 cut(s)	16, 389
Psp6I	CCWGG	2 cut(s)	147, 409
PspEI	GGTNACC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	147, 409
PspN4I	GGNNCC	2 cut(s)	17, 558
PspPI	GGNCC	3 cut(s)	16, 296, 389
PspPPI	RGGWCCY	2 cut(s)	16, 389
PstI	CTGCAG	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
RseI	CAYNNNNRTG	2 cut(s)	263, 304
SaqAI	TTAA	2 cut(s)	5, 658
SatI	GCNGC	4 cut(s)	140, 365, 645, 654
Sau96I	GGNCC	3 cut(s)	16, 296, 389
ScrFI	CCNGG	2 cut(s)	149, 411
SduI	GDGCHC	2 cut(s)	56, 94
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	137
SinI	GGWCC	3 cut(s)	16, 296, 389
SmiMI	CAYNNNNRTG	2 cut(s)	263, 304
Sse9I	AATT	4 cut(s)	270, 279, 334, 416
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	1 cut(s)	364
SspMI	CTAG	2 cut(s)	74, 428
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	147, 409
StyI	CCWWGG	2 cut(s)	253, 630
TaaI	ACNGT	2 cut(s)	128, 565
TaiI	ACGT	1 cut(s)	387
TasI	AATT	4 cut(s)	270, 279, 334, 416
TatI	WGTACW	1 cut(s)	445
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	5, 658
Tru9I	TTAA	2 cut(s)	5, 658
TscAI	CASTG	2 cut(s)	121, 604
TseFI	GTSAC	2 cut(s)	128, 595
TseI	GCWGC	3 cut(s)	139, 644, 653
Tsp45I	GTSAC	2 cut(s)	128, 595
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	121, 604
VneI	GTGCAC	1 cut(s)	90
VpaK11BI	GGWCC	3 cut(s)	16, 296, 389
XapI	RAATTY	2 cut(s)	279, 416
XceI	RCATGY	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	2 cut(s)	74, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.