Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003941.1

Orthogroup ID

OG0002167

Physical Location & Seq

Genomic Coordinates Forward (+)

51060 .. 51446

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003941.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgcggctgatggaagggaatcacgtaggacctttcaatcttggaaatcctggtgaattcaccatgctagaacttgctcaggttgtacaagacaccatagaccccaatgcaaagatagagttcaggccaaacacagaagatgacccccataagaggaagccagacatttcaaaggcaaaagagcttctcggatgggagcctactgtgtctctcagaaaaggacttcctctcatggtcactgactttagacagcgcatatttggcgacgccaaggacagcattgcagctgaggcagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009987 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

99

Amino Acids

11.07

Weight (kDa)

5.32

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47650 AT2G47650 AT3G62830 AT3G62830
fragaria_vesca	FvH4_2g25720 FvH4_2g25720 FvH4_2g25720 FvH4_4g18410
malus_domestica	MD00G1128000.v1.1 MD03G1288200.v1.1 MD11G1309900.v1.1 MD16G1167000.v1.1
prunus_persica	Prupe.1G134000_v2.0.a1 Prupe.8G261400_v2.0.a1 Prupe.8G261400_v2.0.a1
pyrus_communis	pycom16g14100
rosa_chinensis	RchiOBHm_Chr4g0422861 RchiOBHm_Chr6g0294001 RchiOBHm_Chr6g0294011
rosa_laevigata	RLG00000007599 RLG00000011908
rosa_multiflora	Rmu_co8291503.1_g000001 Rmu_sc0000830.1_g000041 Rmu_sc0002321.1_g000009 Rmu_sc0003941.1_g000011 Rmu_sc0004849.1_g000008 Rmu_sc0005126.1_g000004 Rmu_sc0007876.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364720 Rroxscaffold_7G00173730
rosa_rugosa	Rorug04G0181900 Rorug06G0240000
rosa_samantha	Rh4AG242300 Rh4BG245900 Rh4CG256200 Rh4DG240900 Rh6AG353100 Rh6BG360000 Rh6CG367300 Rh6DG353700 Rh6DG353800
rosa_wichuraiana	Rw4G020870 Rw6G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	37, 171
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	3 cut(s)	184, 287, 296
AluI	AGCT	3 cut(s)	184, 287, 296
Alw26I	GTCTC	1 cut(s)	213
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	284, 293
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	52, 65
AvaII	GGWCC	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	2 cut(s)	4, 186
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	68
BisI	GCNGC	3 cut(s)	5, 285, 294
BlsI	GCNGC	3 cut(s)	6, 286, 295
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	51
Bpu10I	CCTNAGC	2 cut(s)	78, 288
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	3 cut(s)	92, 226, 279
BseXI	GCAGC	1 cut(s)	296
BshFI	GGCC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	85
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	3 cut(s)	91, 225, 280
BspLI	GGNNCC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	279
BsrGI	TGTACA	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	270
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	25
BstDEI	CTNAG	3 cut(s)	78, 212, 288
BstF5I	GGATG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	261, 290, 293
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	237
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	29
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	64, 232
CviJI	RGCY	7 cut(s)	7, 127, 160, 184, 199, 287, 296
CviKI_1	RGCY	7 cut(s)	7, 127, 160, 184, 199, 287, 296
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	3 cut(s)	78, 212, 288
Eco130I	CCWWGG	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	67, 235
FaiI	YATR	5 cut(s)	65, 98, 150, 233, 257
FatI	CATG	2 cut(s)	63, 231
Fnu4HI	GCNGC	3 cut(s)	5, 285, 294
FokI	GGATG	1 cut(s)	204
Fsp4HI	GCNGC	3 cut(s)	5, 285, 294
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	3 cut(s)	5, 285, 294
HaeIII	GGCC	1 cut(s)	127
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	67, 235
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	19
HphI	GGTGA	2 cut(s)	52, 65
Hpy188I	TCNGA	2 cut(s)	191, 215
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	110, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	261, 290, 293
HpyF3I	CTNAG	3 cut(s)	78, 212, 288
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	67, 235
HspAI	GCGC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	5 cut(s)	36, 63, 65, 109, 174
Lsp1109I	GCAGC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	149
MluCI	AATT	1 cut(s)	56
MnlI	CCTC	3 cut(s)	147, 237, 283
MseI	TTAA	1 cut(s)	298
MspA1I	CMGCKG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	3 cut(s)	261, 290, 293
NlaIII	CATG	2 cut(s)	67, 235
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	6, 286, 295
Ppu21I	YACGTR	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	29
PspPPI	RGGWCCY	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	298
SatI	GCNGC	3 cut(s)	5, 285, 294
Sau96I	GGNCC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	6 cut(s)	27, 34, 84, 186, 289, 298
SinI	GGWCC	1 cut(s)	29
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	27
TasI	AATT	1 cut(s)	56
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	284, 293
Tsp45I	GTSAC	1 cut(s)	235
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	56
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.