AT4G02610

Belongs to the TrpA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002070
Physical Location & Seq
Forward (+)
1147608 .. 1149336
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02610.1

Sequence Viewer

Length: 828 bp
ATGGATCTTCTCAAGACTCCTTCCTCCACGGTTGGTCTATCAGAAACATTCGCTAGGTTAAAGTCACAAGGCAAAGTGGCTCTGATTCCATATATCACAGCTGGTGATCCTGATCTTTCTACAACAGCGAAAGCTCTTAAAGTGCTTGATTCGTGTGGCTCCGACATAATCGAACTCGGTGTTCCATACTCTGATCCATTAGCTGATGGTCCAGCAATCCAGGCTGCTGCGAGACGTTCGTTACTTAAAGGAACCAACTTTAACTCCATTATCTCTATGCTTAAAGAGGTTATTCCTCAGTTATCTTGTCCAATTGCATTGTTTACATATTACAATCCAATCCTGCGACGAGGAGTAGAGAACTACATGACTGTTATAAAGAATGCTGGAGTTCATGGGCTTCTGGTTCCTGATGTTCCACTCGAGGAGACTGAAACTCTGCGGAACGAAGCTCGGAAGCATCAAATTGAGCTAGTACTGCTCACAACACCCACAACTCCAAAAGAACGAATGAATGCCATTGTTGAAGCCTCTGAAGGATTTATCTATCTCGTAAGTTCAGTAGGGGTTACTGGTACAAGAGAGTCTGTTAACGAAAAAGTTCAATCTCTTCTACAACAAATCAAAGAGGCAACTAGCAAGCCAGTGGCAGTTGGATTTGGCATATCAAAACCTGAGCATGTGAAACAGGTAGCTGAATGGGGAGCAGACGGAGTCATTGTTGGTAGCGCGATGGTTAAGATCTTGGGCGAGTCTGAATCACCTGAGCAAGGACTTAAGGAGCTAGAATTCTTCACTAAATCTTTGAAGTCTGCTCTTGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016830 GO:0016832 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0033984 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230
Pfam Domains
Protein Families
Trp_syntA

Protein Analysis

275

Amino Acids

29.58

Weight (kDa)

5.76

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_syntA PF00290 17 - 272 1.2e-96 Tryptophan synthase alpha chain
His_biosynth PF00977 191 - 247 6.5e-07 Histidine biosynthesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AccII CGCG 1 cut(s) 731
AciI CCGC 1 cut(s) 442
AclWI GGATC 3 cut(s) 12, 101, 188
AcsI RAATTY 1 cut(s) 788
AcuI CTGAAG 1 cut(s) 555
AfaI GTAC 2 cut(s) 477, 577
AfiI CCNNNNNNNGG 1 cut(s) 770
AflII CTTAAG 1 cut(s) 776
AgsI TTSAA 3 cut(s) 527, 605, 808
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 7 cut(s) 101, 134, 203, 452, 472, 695, 784
AluI AGCT 7 cut(s) 101, 134, 203, 452, 472, 695, 784
Alw26I GTCTC 2 cut(s) 226, 422
AlwI GGATC 3 cut(s) 12, 101, 188
Ama87I CYCGRG 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 224, 227
ApoI RAATTY 1 cut(s) 788
Asp700I GAANNNNTTC 1 cut(s) 600
AspLEI GCGC 1 cut(s) 731
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 116, 753
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 211, 214
BccI CCATC 2 cut(s) 200, 727
BciT130I CCWGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 226, 422
BfaI CTAG 4 cut(s) 54, 473, 636, 785
BfrI CTTAAG 1 cut(s) 776
BglII AGATCT 1 cut(s) 741
BisI GCNGC 2 cut(s) 225, 228
BlsI GCNGC 2 cut(s) 226, 229
BmcAI AGTACT 1 cut(s) 477
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 3 cut(s) 160, 253, 408
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 2 cut(s) 675, 765
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 4 cut(s) 248, 278, 705, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 770
Bse1I ACTGG 2 cut(s) 577, 644
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 770
BseMII CTCAG 3 cut(s) 311, 666, 756
BseNI ACTGG 2 cut(s) 577, 644
BseRI GAGGAG 2 cut(s) 366, 440
BseXI GCAGC 2 cut(s) 211, 214
Bsh1236I CGCG 1 cut(s) 731
BsiHKCI CYCGRG 1 cut(s) 422
BslI CCNNNNNNNGG 1 cut(s) 770
BsmAI GTCTC 2 cut(s) 226, 422
BsmBI CGTCTC 1 cut(s) 226
BsmI GAATGC 2 cut(s) 388, 520
BsoBI CYCGRG 1 cut(s) 422
Bsp143I GATC 5 cut(s) 4, 106, 112, 193, 741
BspACI CCGC 1 cut(s) 442
BspCNI CTCAG 3 cut(s) 310, 667, 757
BspFNI CGCG 1 cut(s) 731
BspLI GGNNCC 3 cut(s) 160, 253, 408
BspPI GGATC 3 cut(s) 12, 101, 188
BspTI CTTAAG 1 cut(s) 776
BsrI ACTGG 2 cut(s) 577, 644
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 4, 106, 112, 193, 741
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 31, 373
Bst6I CTCTTC 1 cut(s) 615
BstAFI CTTAAG 1 cut(s) 776
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 3 cut(s) 297, 675, 765
BstDSI CCRYGG 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 768
BstFNI CGCG 1 cut(s) 731
BstHHI GCGC 1 cut(s) 731
BstKTI GATC 5 cut(s) 7, 109, 115, 196, 744
BstMAI GTCTC 2 cut(s) 226, 422
BstMBI GATC 5 cut(s) 4, 106, 112, 193, 741
BstMWI GCNNNNNNNGC 2 cut(s) 221, 478
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 683
BstSCI CCNGG 1 cut(s) 219
BstUI CGCG 1 cut(s) 731
BstV1I GCAGC 2 cut(s) 211, 214
BstX2I RGATCY 2 cut(s) 4, 741
BstYI RGATCY 2 cut(s) 4, 741
BtgI CCRYGG 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 746
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 641
CfoI GCGC 1 cut(s) 731
Cfr13I GGNCC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 476, 576
CviAII CATG 3 cut(s) 367, 395, 680
CviQI GTAC 2 cut(s) 476, 576
DdeI CTNAG 3 cut(s) 297, 675, 765
DpnI GATC 5 cut(s) 6, 108, 114, 195, 743
DpnII GATC 5 cut(s) 4, 106, 112, 193, 741
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco47I GGWCC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 422
EcoNI CCTNNNNNAGG 1 cut(s) 768
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 3 cut(s) 370, 398, 683
FatI CATG 3 cut(s) 366, 394, 679
Fnu4HI GCNGC 2 cut(s) 225, 228
Fsp4HI GCNGC 2 cut(s) 225, 228
FspBI CTAG 4 cut(s) 54, 473, 636, 785
GlaI GCGC 1 cut(s) 730
GluI GCNGC 2 cut(s) 225, 228
GsuI CTGGAG 1 cut(s) 408
HhaI GCGC 1 cut(s) 731
Hin1II CATG 3 cut(s) 370, 398, 683
Hin6I GCGC 1 cut(s) 729
HinP1I GCGC 1 cut(s) 729
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HinfI GANTC 7 cut(s) 16, 85, 149, 584, 714, 752, 758
HpaI GTTAAC 1 cut(s) 592
HphI GGTGA 2 cut(s) 116, 753
Hpy166II GTNNAC 2 cut(s) 324, 592
Hpy188I TCNGA 7 cut(s) 43, 84, 163, 193, 456, 535, 757
Hpy188III TCNNGA 4 cut(s) 13, 110, 410, 825
Hpy8I GTNNAC 2 cut(s) 324, 592
Hpy99I CGWCG 1 cut(s) 351
HpyAV CCTTC 2 cut(s) 30, 530
HpyCH4III ACNGT 2 cut(s) 31, 373
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 478
HpyF3I CTNAG 3 cut(s) 297, 675, 765
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 3 cut(s) 370, 398, 683
HspAI GCGC 1 cut(s) 729
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 5 cut(s) 4, 106, 112, 193, 741
LmnI GCTCC 3 cut(s) 164, 704, 781
Lsp1109I GCAGC 2 cut(s) 211, 214
LweI GCATC 1 cut(s) 469
MaeI CTAG 4 cut(s) 54, 473, 636, 785
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 3 cut(s) 63, 240, 568
MalI GATC 5 cut(s) 6, 108, 114, 195, 743
MboI GATC 5 cut(s) 4, 106, 112, 193, 741
MboII GAAGA 2 cut(s) 602, 784
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 2 cut(s) 4, 741
MluCI AATT 3 cut(s) 312, 465, 788
MlyI GAGTC 4 cut(s) 10, 593, 723, 761
MmeI TCCRAC 2 cut(s) 186, 634
MnlI CCTC 7 cut(s) 34, 280, 306, 344, 418, 541, 622
MroXI GAANNNNTTC 1 cut(s) 600
MseI TTAA 8 cut(s) 59, 138, 246, 261, 282, 591, 738, 777
MspA1I CMGCKG 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 776
MspR9I CCNGG 1 cut(s) 221
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 2 cut(s) 388, 520
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 731
MwoI GCNNNNNNNGC 2 cut(s) 221, 478
NdeII GATC 5 cut(s) 4, 106, 112, 193, 741
NlaIII CATG 3 cut(s) 370, 398, 683
NlaIV GGNNCC 3 cut(s) 160, 253, 408
NmuCI GTSAC 1 cut(s) 63
NspI RCATGY 1 cut(s) 683
PaeR7I CTCGAG 1 cut(s) 422
PctI GAATGC 2 cut(s) 388, 520
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 3 cut(s) 85, 149, 758
PflFI GACNNNGTC 1 cut(s) 713
PkrI GCNGC 2 cut(s) 226, 229
PleI GAGTC 4 cut(s) 10, 592, 722, 760
PpsI GAGTC 4 cut(s) 10, 592, 722, 760
PsiI TTATAA 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 3 cut(s) 160, 253, 408
PspPI GGNCC 1 cut(s) 209
PspXI VCTCGAGB 1 cut(s) 422
PsuI RGATCY 2 cut(s) 4, 741
PsyI GACNNNGTC 1 cut(s) 713
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 477, 577
RsaNI GTAC 2 cut(s) 476, 576
SaqAI TTAA 8 cut(s) 59, 138, 246, 261, 282, 591, 738, 777
SatI GCNGC 2 cut(s) 225, 228
Sau3AI GATC 5 cut(s) 4, 106, 112, 193, 741
Sau96I GGNCC 1 cut(s) 209
ScaI AGTACT 1 cut(s) 477
SchI GAGTC 4 cut(s) 10, 593, 723, 761
ScrFI CCNGG 1 cut(s) 221
SfaNI GCATC 1 cut(s) 469
Sfr274I CTCGAG 1 cut(s) 422
SinI GGWCC 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 422
SmlI CTYRAG 3 cut(s) 11, 422, 776
SmoI CTYRAG 3 cut(s) 11, 422, 776
Sse9I AATT 3 cut(s) 312, 465, 788
SsiI CCGC 1 cut(s) 442
SspMI CTAG 4 cut(s) 54, 473, 636, 785
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 31, 373
TaiI ACGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 171, 423
TasI AATT 3 cut(s) 312, 465, 788
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 3 cut(s) 85, 149, 758
Tru1I TTAA 8 cut(s) 59, 138, 246, 261, 282, 591, 738, 777
Tru9I TTAA 8 cut(s) 59, 138, 246, 261, 282, 591, 738, 777
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 2 cut(s) 224, 227
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 383, 527
TspGWI ACGGA 1 cut(s) 726
TspRI CASTG 1 cut(s) 651
Tth111I GACNNNGTC 1 cut(s) 713
Vha464I CTTAAG 1 cut(s) 776
VpaK11BI GGWCC 1 cut(s) 209
XagI CCTNNNNNAGG 1 cut(s) 768
XapI RAATTY 1 cut(s) 788
XceI RCATGY 1 cut(s) 683
XhoI CTCGAG 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 4 cut(s) 54, 473, 636, 785
ZrmI AGTACT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.