Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Forward (+)

32219248 .. 32220285

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013482

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTCTTCCTATTTCTCTAACGTCCCCTACCGGCCCTTTTCAACTCATTACAAAGAACCCTCAAAACCCATATTCTCATCTTCATTCTCCATTCCAAACAACAACAACCTTTTCGATCAAGAAACTACTTGGGCCAAATACAATGGCTACCCTCACAACCACTTCCCCTAACAGAATCTCGGAAACTTTCACAAAATTGAAGTCACAGGGGAAAGTGGCATTTATCCCCTACATCACCGCGGGAGATCCTGATCTCTCGACTACCGCAGAAGCATTGAAGGTGCTCGATTCTTGTGGATCGGACATAATCGAACTAGGGGTGCCCTACTCCGATCCATTACTAGACGGTCCCGTCATACGTGATTCAGCTACTCGTTCCTTGGCTAGAGGGACAAACTTAAACAAGGTTATCTCAATGTTGAAGGAGGTTATTCCACAGCTGTCTTGCCCCATCACTCTTTTGTCTTACTCTGACCCTATTATCAAGCATGGCATCGTAAACTTCATGTTGAACATTAGTGAAGCAGGCGTTAGTGGGCTTGTGGTTCCGGATGTTCCTTTTGAAGAGACACAACTGTTGAGAATGGAAGCTGCGAAGAATGACATTGAATTGGTGCTGCTAACCACACCCACTGCTACAAGAGATCGCATGAAAGACATTGTCCAAGCTTCGGAGGGATTTGTGTACCTGGTGAGTACGGTGGGGGTTACTGGAGCTCGTGATCGTGTGAACGAACAAGTTCCAAGTCTTTTGAGGGAGATTAAAGAGGCGACAAACAAGGCGGTGGCGGTTGGTTTCGGGTTGTCGAAGCCTGAGCATGTGAAGCAGGTGGCGAAGTGGGGGGCTGATGGCGCTATTGTTGGCAGTGCCATTGTGAAGGTATTAGGTGAAGCTAGATCTCCATTGCGAGGGTTGAGAGAACTTGAAACTCTCACCAAATCTTTCAAGTCGGCTCTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

322

Amino Acids

34.56

Weight (kDa)

8.42

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	64 - 319	1.7e-88	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	820
AasI	GACNNNNNNGTC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	820
AccB1I	GGYRCC	1 cut(s)	322
AccII	CGCG	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	5 cut(s)	240, 242, 267, 785, 791
AclWI	GGATC	3 cut(s)	242, 307, 329
AfaI	GTAC	2 cut(s)	689, 700
AfiI	CCNNNNNNNGG	2 cut(s)	673, 911
AgsI	TTSAA	9 cut(s)	44, 202, 280, 424, 514, 566, 611, 929, 949
AjnI	CCWGG	1 cut(s)	690
AluBI	AGCT	6 cut(s)	371, 442, 593, 671, 719, 896
AluI	AGCT	6 cut(s)	371, 442, 593, 671, 719, 896
Alw21I	GWGCWC	2 cut(s)	288, 721
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	3 cut(s)	242, 307, 329
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	2 cut(s)	34, 134
ApeKI	GCWGC	2 cut(s)	593, 619
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	857
AspS9I	GGNCC	3 cut(s)	35, 134, 350
AsuHPI	GGTGA	4 cut(s)	229, 706, 902, 928
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	721
BauI	CACGAG	1 cut(s)	720
Bbv12I	GWGCWC	2 cut(s)	288, 721
BbvI	GCAGC	2 cut(s)	580, 606
BccI	CCATC	2 cut(s)	461, 845
BciT130I	CCWGG	1 cut(s)	692
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	4 cut(s)	317, 344, 387, 897
BfoI	RGCGCY	1 cut(s)	858
BfuAI	ACCTGC	1 cut(s)	820
BglII	AGATCT	1 cut(s)	899
BisI	GCNGC	2 cut(s)	594, 620
BlsI	GCNGC	2 cut(s)	595, 621
Bme1390I	CCNGG	1 cut(s)	692
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	35, 134, 350
BmiI	GGNNCC	3 cut(s)	324, 352, 549
BmrFI	CCNGG	1 cut(s)	692
BmsI	GCATC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	816
BsaAI	YACGTR	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	240, 381
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	2 cut(s)	673, 911
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	718
Bse3DI	GCAATG	1 cut(s)	905
Bse8I	GATNNNNATC	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	692
BseDI	CCNNGG	2 cut(s)	240, 381
BseGI	GGATG	1 cut(s)	559
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	673, 911
BseMI	GCAATG	1 cut(s)	905
BseMII	CTCAG	1 cut(s)	807
BseNI	ACTGG	1 cut(s)	718
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	580, 606
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	36, 136
BshNI	GGYRCC	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	288, 721
BsiSI	CCGG	2 cut(s)	33, 551
BslFI	GGGAC	3 cut(s)	10, 336, 406
BslI	CCNNNNNNNGG	2 cut(s)	673, 911
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	3 cut(s)	10, 336, 406
BsnI	GGCC	2 cut(s)	36, 136
Bsp1286I	GDGCHC	3 cut(s)	288, 327, 721
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	8 cut(s)	117, 247, 253, 299, 334, 646, 724, 899
BspACI	CCGC	5 cut(s)	240, 242, 267, 785, 791
BspANI	GGCC	2 cut(s)	36, 136
BspCNI	CTCAG	1 cut(s)	808
BspEI	TCCGGA	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	3 cut(s)	324, 352, 549
BspMI	ACCTGC	1 cut(s)	820
BspPI	GGATC	3 cut(s)	242, 307, 329
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	905
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	718
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	240, 381
BssMI	GATC	8 cut(s)	117, 247, 253, 299, 334, 646, 724, 899
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	692
Bst4CI	ACNGT	3 cut(s)	350, 579, 703
Bst6I	CTCTTC	2 cut(s)	12, 561
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	1 cut(s)	816
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	858
BstHHI	GCGC	1 cut(s)	857
BstKTI	GATC	8 cut(s)	120, 250, 256, 302, 337, 649, 727, 902
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	8 cut(s)	117, 247, 253, 299, 334, 646, 724, 899
BstMWI	GCNNNNNNNGC	2 cut(s)	826, 854
BstNI	CCWGG	1 cut(s)	692
BstNSI	RCATGY	1 cut(s)	824
BstSCI	CCNGG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	327
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	580, 606
BstX2I	RGATCY	2 cut(s)	247, 899
BstYI	RGATCY	2 cut(s)	247, 899
BsuRI	GGCC	2 cut(s)	36, 136
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	2 cut(s)	633, 874
BtsIMutI	CAGTG	2 cut(s)	633, 874
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	1 cut(s)	529
CfoI	GCGC	1 cut(s)	857
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	35, 134, 350
Cfr42I	CCGCGG	1 cut(s)	243
CsiI	ACCWGGT	1 cut(s)	690
Csp6I	GTAC	2 cut(s)	688, 699
CviAII	CATG	4 cut(s)	491, 508, 652, 821
CviQI	GTAC	2 cut(s)	688, 699
DdeI	CTNAG	1 cut(s)	816
DpnI	GATC	8 cut(s)	119, 249, 255, 301, 336, 648, 726, 901
DpnII	GATC	8 cut(s)	117, 247, 253, 299, 334, 646, 724, 899
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	12, 561
EarI	CTCTTC	2 cut(s)	12, 561
Ecl136II	GAGCTC	1 cut(s)	719
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	4 cut(s)	494, 511, 655, 824
FaiI	YATR	7 cut(s)	73, 308, 359, 492, 509, 653, 822
FaqI	GGGAC	3 cut(s)	10, 336, 406
FatI	CATG	4 cut(s)	490, 507, 651, 820
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	594, 620
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	2 cut(s)	594, 620
FspBI	CTAG	4 cut(s)	317, 344, 387, 897
GlaI	GCGC	1 cut(s)	856
GluI	GCNGC	2 cut(s)	594, 620
GsuI	CTGGAG	1 cut(s)	735
HaeII	RGCGCY	1 cut(s)	858
HaeIII	GGCC	2 cut(s)	36, 136
HapII	CCGG	2 cut(s)	33, 551
HhaI	GCGC	1 cut(s)	857
Hin1II	CATG	4 cut(s)	494, 511, 655, 824
Hin6I	GCGC	1 cut(s)	855
HinP1I	GCGC	1 cut(s)	855
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	3 cut(s)	177, 290, 365
HpaII	CCGG	2 cut(s)	33, 551
HphI	GGTGA	4 cut(s)	229, 706, 902, 928
Hpy166II	GTNNAC	3 cut(s)	502, 688, 733
Hpy188I	TCNGA	5 cut(s)	184, 304, 334, 475, 676
Hpy188III	TCNNGA	5 cut(s)	121, 251, 259, 551, 722
Hpy8I	GTNNAC	3 cut(s)	502, 688, 733
HpyAV	CCTTC	3 cut(s)	274, 418, 874
HpyCH4III	ACNGT	3 cut(s)	350, 579, 703
HpyCH4IV	ACGT	2 cut(s)	23, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	826, 854
HpyF3I	CTNAG	1 cut(s)	816
HpySE526I	ACGT	2 cut(s)	23, 361
Hsp92II	CATG	4 cut(s)	494, 511, 655, 824
HspAI	GCGC	1 cut(s)	855
Kpn2I	TCCGGA	1 cut(s)	550
KspI	CCGCGG	1 cut(s)	243
Kzo9I	GATC	8 cut(s)	117, 247, 253, 299, 334, 646, 724, 899
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	716
Lsp1109I	GCAGC	2 cut(s)	580, 606
LweI	GCATC	1 cut(s)	504
MabI	ACCWGGT	1 cut(s)	690
MaeI	CTAG	4 cut(s)	317, 344, 387, 897
MaeII	ACGT	2 cut(s)	23, 361
MaeIII	GTNAC	2 cut(s)	204, 709
MalI	GATC	8 cut(s)	119, 249, 255, 301, 336, 648, 726, 901
MboI	GATC	8 cut(s)	117, 247, 253, 299, 334, 646, 724, 899
MboII	GAAGA	3 cut(s)	74, 578, 610
MflI	RGATCY	2 cut(s)	247, 899
MhlI	GDGCHC	3 cut(s)	288, 327, 721
MluCI	AATT	2 cut(s)	197, 611
MnlI	CCTC	8 cut(s)	72, 164, 383, 421, 670, 750, 763, 905
MroI	TCCGGA	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	2 cut(s)	401, 765
MspA1I	CMGCKG	2 cut(s)	242, 442
MspI	CCGG	2 cut(s)	33, 551
MspR9I	CCNGG	1 cut(s)	692
MvaI	CCWGG	1 cut(s)	692
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	826, 854
NdeII	GATC	8 cut(s)	117, 247, 253, 299, 334, 646, 724, 899
NlaIII	CATG	4 cut(s)	494, 511, 655, 824
NlaIV	GGNNCC	3 cut(s)	324, 352, 549
NmuCI	GTSAC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	824
PaqCI	CACCTGC	1 cut(s)	820
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	3 cut(s)	177, 290, 365
PflFI	GACNNNGTC	1 cut(s)	662
PkrI	GCNGC	2 cut(s)	595, 621
Ppu21I	YACGTR	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	721
Psp6I	CCWGG	1 cut(s)	690
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	3 cut(s)	324, 352, 549
PspPI	GGNCC	3 cut(s)	35, 134, 350
PsuI	RGATCY	2 cut(s)	247, 899
PsyI	GACNNNGTC	1 cut(s)	662
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	689, 700
RsaNI	GTAC	2 cut(s)	688, 699
SacI	GAGCTC	1 cut(s)	721
SacII	CCGCGG	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	401, 765
SatI	GCNGC	2 cut(s)	594, 620
Sau3AI	GATC	8 cut(s)	117, 247, 253, 299, 334, 646, 724, 899
Sau96I	GGNCC	3 cut(s)	35, 134, 350
ScrFI	CCNGG	1 cut(s)	692
SduI	GDGCHC	3 cut(s)	288, 327, 721
SexAI	ACCWGGT	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	504
Sfr303I	CCGCGG	1 cut(s)	243
SgrBI	CCGCGG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	350
Sse9I	AATT	2 cut(s)	197, 611
SsiI	CCGC	5 cut(s)	240, 242, 267, 785, 791
SspMI	CTAG	4 cut(s)	317, 344, 387, 897
SstI	GAGCTC	1 cut(s)	721
StyD4I	CCNGG	1 cut(s)	690
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	350, 579, 703
TaiI	ACGT	2 cut(s)	26, 364
TaqI	TCGA	5 cut(s)	116, 260, 288, 312, 809
TasI	AATT	2 cut(s)	197, 611
TfiI	GAWTC	3 cut(s)	177, 290, 365
Tru1I	TTAA	2 cut(s)	401, 765
Tru9I	TTAA	2 cut(s)	401, 765
TscAI	CASTG	2 cut(s)	640, 874
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	2 cut(s)	593, 619
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	3 cut(s)	74, 496, 668
TspRI	CASTG	2 cut(s)	640, 874
Tth111I	GACNNNGTC	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	350
XceI	RCATGY	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	4 cut(s)	317, 344, 387, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.