Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Reverse (-)

15683000 .. 15683734

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G144400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTACTTCTCTGAAATTCACTGCTACTGGCTTTTTTCAACTTAAGAAACCACAAAATCCATTTCTTCTTCCATCCCAAGCATCAACCGTTCCAGTAAAGAAAAGTCTTCTAACACCAATGGCTGCTCTCACCTTGACCCCTACCATCAATCTCTCTCAAACTTTCACAAAATTGAAAAATCAACGCGAAGTAGCATTTATCCCTTACATCACTGCCGGTGATCCCGGCCTTTCAACCACGGCGCAAGCGCTGAAGGTGCTCGATTCTAGTGGGGCGGACATGATCGAGTTAGGTGTGCCACACTCGGATCCAATACTAGACGTTATATCTTTTCCAATCGTTTTATTTTCGTACCATAACCCAATTATAAAGCATGGTATTGAAAACTTCATGCCTACAATTAGCGACGTTGGGGTACAAGGTCTTGTGGTTCCAGATGCTCCATTTGAAGAGACAAAAAGCTTGAGAAAGGAGGCTGTGAAGAATAATGCTGAGTTGGCATCAAGGGTGGAACCAGAAATTTTTCAATGGGTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

181

Amino Acids

19.58

Weight (kDa)

6.29

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	3 cut(s)	218, 305, 318
AcsI	RAATTY	2 cut(s)	17, 522
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	2 cut(s)	356, 420
AfeI	AGCGCT	1 cut(s)	252
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	6 cut(s)	41, 178, 237, 386, 452, 530
AluBI	AGCT	1 cut(s)	465
AluI	AGCT	1 cut(s)	465
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	3 cut(s)	218, 305, 318
Aor51HI	AGCGCT	1 cut(s)	252
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	17, 522
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	2 cut(s)	247, 253
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	124, 233
BamHI	GGATCC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	82, 155
BceAI	ACGGC	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	3 cut(s)	270, 320, 541
BfoI	RGCGCY	1 cut(s)	254
BfrI	CTTAAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	3 cut(s)	312, 435, 516
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	3 cut(s)	92, 430, 512
BpiI	GAAGAC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	487
BpuMI	CCSGG	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	34, 95
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	34, 95
BseXI	GCAGC	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	219, 228
BsmAI	GTCTC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	223, 285, 310
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	312, 435, 516
BspPI	GGATC	3 cut(s)	218, 305, 318
BspTI	CTTAAG	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	34, 95
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	223, 285, 310
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	447
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	495
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	74
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	247, 253
BstKTI	GATC	3 cut(s)	226, 288, 313
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	3 cut(s)	223, 285, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 500
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	74
BtsI	GCAGTG	2 cut(s)	21, 213
BtsIMutI	CAGTG	2 cut(s)	21, 213
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	2 cut(s)	247, 253
Cfr10I	RCCGGY	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	355, 419
CviAII	CATG	3 cut(s)	283, 377, 394
CviJI	RGCY	7 cut(s)	5, 33, 125, 231, 465, 479, 540
CviKI_1	RGCY	7 cut(s)	5, 33, 125, 231, 465, 479, 540
CviQI	GTAC	2 cut(s)	355, 419
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	3 cut(s)	225, 287, 312
DpnII	GATC	3 cut(s)	223, 285, 310
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	293
Eco47III	AGCGCT	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	275
FaeI	CATG	3 cut(s)	286, 380, 397
FaiI	YATR	6 cut(s)	284, 329, 360, 371, 378, 395
FatI	CATG	3 cut(s)	282, 376, 393
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	3 cut(s)	270, 320, 541
GlaI	GCGC	2 cut(s)	246, 252
GluI	GCNGC	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	219, 228
HhaI	GCGC	2 cut(s)	247, 253
Hin1II	CATG	3 cut(s)	286, 380, 397
Hin6I	GCGC	2 cut(s)	245, 251
HinP1I	GCGC	2 cut(s)	245, 251
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	2 cut(s)	219, 228
HphI	GGTGA	2 cut(s)	124, 233
Hpy188I	TCNGA	2 cut(s)	15, 310
Hpy188III	TCNNGA	1 cut(s)	437
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	2 cut(s)	324, 411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 500
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	2 cut(s)	324, 411
Hsp92II	CATG	3 cut(s)	286, 380, 397
HspAI	GCGC	2 cut(s)	245, 251
Kzo9I	GATC	3 cut(s)	223, 285, 310
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	6 cut(s)	15, 108, 232, 241, 450, 531
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	3 cut(s)	92, 430, 512
MaeI	CTAG	3 cut(s)	270, 320, 541
MaeII	ACGT	2 cut(s)	324, 411
MalI	GATC	3 cut(s)	225, 287, 312
MboI	GATC	3 cut(s)	223, 285, 310
MboII	GAAGA	5 cut(s)	59, 62, 101, 464, 496
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	5 cut(s)	17, 173, 366, 402, 522
MnlI	CCTC	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	2 cut(s)	219, 228
MspR9I	CCNGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	259, 500
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	3 cut(s)	223, 285, 310
NlaIII	CATG	3 cut(s)	286, 380, 397
NlaIV	GGNNCC	3 cut(s)	312, 435, 516
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	127
PsiI	TTATAA	1 cut(s)	371
PspN4I	GGNNCC	3 cut(s)	312, 435, 516
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	2 cut(s)	356, 420
RsaNI	GTAC	2 cut(s)	355, 419
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	3 cut(s)	223, 285, 310
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	7 cut(s)	137, 261, 298, 327, 414, 427, 467
SfaNI	GCATC	3 cut(s)	92, 430, 512
SmlI	CTYRAG	2 cut(s)	44, 466
SmoI	CTYRAG	2 cut(s)	44, 466
Sse9I	AATT	5 cut(s)	17, 173, 366, 402, 522
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	3 cut(s)	270, 320, 541
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	2 cut(s)	327, 414
TaqI	TCGA	2 cut(s)	264, 288
TasI	AATT	5 cut(s)	17, 173, 366, 402, 522
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	2 cut(s)	28, 220
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	382
TspRI	CASTG	2 cut(s)	28, 220
Vha464I	CTTAAG	1 cut(s)	44
XapI	RAATTY	2 cut(s)	17, 522
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	3 cut(s)	270, 320, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.