Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Forward (+)

55741907 .. 55742726

Gene Structure 820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCTGCTCTCACCTCCACTGCCCCTAACAGAATCTCAGAAACTTTCGCAAAATTGAAGTCACAACGGAAAGTGGCATTTATCCCCTACATCACCGCTAGAGATCCTGATCTTTCGACTACCGCAGAAGCATTGAAGTTGCTCAATTCTTGTGAATCAGACATAATCAAACTACGGGTGCCCTACTCCGATCCATTACTAGACGGTCCCGTCATACATGATTCAGCTACTCGTTCCTTGGCTAGAGGGACAAACCTGAACAAGGTTATCTCAATGTTGAAGGAGGTTACTCCACAACTGTCTTGTCAGACACAAGTGTTGAGAATGGAAGCTGCGAAGAATGACATTGAGTTGGTGCTGCTAATCACACCCACTACTACAAGAGATAGCATGAAAGGCATTGTCCAAGCTTCGGAGGGATTTGTGTACCTGGTGAGCACGGTGGGGGTTACTGGAGCTCGTGAGCGTCCTGAACAAGTGAAGCAGGTGGCGGAGTGGGGGCCTGATAGCGTTATTGTTGGCAGTGCCATTGTGAACGTATTAGGTGAAGCTAGATCTCCATTGCAAGGGTTGAGAGAACTTGAAACTTTCACCAAATCTTTCAAGTTGGCTCTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

207

Amino Acids

22.43

Weight (kDa)

8.55

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	16 - 97	1.7e-24	Tryptophan synthase alpha chain
Trp_syntA	PF00290	105 - 156	6.6e-13	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	475
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	178
AciI	CCGC	3 cut(s)	96, 123, 491
AclWI	GGATC	2 cut(s)	98, 185
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	3 cut(s)	262, 412, 566
AgsI	TTSAA	5 cut(s)	58, 136, 280, 584, 604
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	5 cut(s)	227, 332, 410, 458, 551
AluI	AGCT	5 cut(s)	227, 332, 410, 458, 551
Alw21I	GWGCWC	2 cut(s)	440, 460
AlwI	GGATC	2 cut(s)	98, 185
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	5, 332, 358
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AspS9I	GGNCC	2 cut(s)	206, 500
AsuHPI	GGTGA	5 cut(s)	4, 85, 445, 557, 583
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	459
Bbv12I	GWGCWC	2 cut(s)	440, 460
BbvI	GCAGC	2 cut(s)	319, 345
BciT130I	CCWGG	1 cut(s)	431
BfaI	CTAG	4 cut(s)	99, 200, 243, 552
BfuAI	ACCTGC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	554
BisI	GCNGC	3 cut(s)	6, 333, 359
BlsI	GCNGC	3 cut(s)	7, 334, 360
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	206, 500
BmiI	GGNNCC	3 cut(s)	180, 208, 501
BmrFI	CCNGG	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 412, 566
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	560
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	3 cut(s)	262, 412, 566
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	457
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	319, 345
BshFI	GGCC	1 cut(s)	502
BshNI	GGYRCC	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	440, 460
BslFI	GGGAC	2 cut(s)	192, 262
BslI	CCNNNNNNNGG	3 cut(s)	262, 412, 566
BsmFI	GGGAC	2 cut(s)	192, 262
BsnI	GGCC	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	183, 440, 460
Bsp143I	GATC	4 cut(s)	103, 109, 190, 554
BspACI	CCGC	3 cut(s)	96, 123, 491
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	180, 208, 501
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	2 cut(s)	98, 185
BspT107I	GGYRCC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	4 cut(s)	103, 109, 190, 554
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	3 cut(s)	206, 300, 442
BstDEI	CTNAG	1 cut(s)	37
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstKTI	GATC	4 cut(s)	106, 112, 193, 557
BstMBI	GATC	4 cut(s)	103, 109, 190, 554
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	319, 345
BstX2I	RGATCY	2 cut(s)	103, 554
BstYI	RGATCY	2 cut(s)	103, 554
BsuRI	GGCC	1 cut(s)	502
BtsI	GCAGTG	2 cut(s)	18, 529
BtsIMutI	CAGTG	2 cut(s)	18, 529
BveI	ACCTGC	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	206, 500
CseI	GACGC	1 cut(s)	455
CsiI	ACCWGGT	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	2 cut(s)	218, 391
CviJI	RGCY	9 cut(s)	5, 227, 242, 332, 410, 458, 502, 551, 611
CviKI_1	RGCY	9 cut(s)	5, 227, 242, 332, 410, 458, 502, 551, 611
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	4 cut(s)	105, 111, 192, 556
DpnII	GATC	4 cut(s)	103, 109, 190, 554
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	506
Ecl136II	GAGCTC	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	458
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	2 cut(s)	221, 394
FaiI	YATR	4 cut(s)	164, 215, 219, 392
FaqI	GGGAC	2 cut(s)	192, 262
FatI	CATG	2 cut(s)	217, 390
Fnu4HI	GCNGC	3 cut(s)	6, 333, 359
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	3 cut(s)	6, 333, 359
FspBI	CTAG	4 cut(s)	99, 200, 243, 552
GluI	GCNGC	3 cut(s)	6, 333, 359
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	502
HgaI	GACGC	1 cut(s)	455
Hin1II	CATG	2 cut(s)	221, 394
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	3 cut(s)	33, 155, 221
HphI	GGTGA	5 cut(s)	4, 85, 445, 557, 583
Hpy166II	GTNNAC	2 cut(s)	427, 535
Hpy188I	TCNGA	5 cut(s)	40, 160, 190, 309, 415
Hpy188III	TCNNGA	3 cut(s)	107, 461, 470
Hpy8I	GTNNAC	2 cut(s)	427, 535
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	3 cut(s)	206, 300, 442
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	1 cut(s)	565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	2 cut(s)	221, 394
Kzo9I	GATC	4 cut(s)	103, 109, 190, 554
LmnI	GCTCC	1 cut(s)	455
LpnPI	CCDG	8 cut(s)	120, 269, 416, 438, 443, 470, 483, 516
Lsp1109I	GCAGC	2 cut(s)	319, 345
MabI	ACCWGGT	1 cut(s)	429
MaeI	CTAG	4 cut(s)	99, 200, 243, 552
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	3 cut(s)	60, 286, 448
MalI	GATC	4 cut(s)	105, 111, 192, 556
MboI	GATC	4 cut(s)	103, 109, 190, 554
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	2 cut(s)	103, 554
MhlI	GDGCHC	3 cut(s)	183, 440, 460
MluCI	AATT	2 cut(s)	53, 145
MnlI	CCTC	4 cut(s)	25, 239, 277, 409
MspR9I	CCNGG	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	396
NdeII	GATC	4 cut(s)	103, 109, 190, 554
NlaIII	CATG	2 cut(s)	221, 394
NlaIV	GGNNCC	3 cut(s)	180, 208, 501
NmuCI	GTSAC	1 cut(s)	60
PaqCI	CACCTGC	1 cut(s)	475
PfeI	GAWTC	3 cut(s)	33, 155, 221
PkrI	GCNGC	3 cut(s)	7, 334, 360
Psp124BI	GAGCTC	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	180, 208, 501
PspPI	GGNCC	2 cut(s)	206, 500
PsuI	RGATCY	2 cut(s)	103, 554
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SacI	GAGCTC	1 cut(s)	460
SatI	GCNGC	3 cut(s)	6, 333, 359
Sau3AI	GATC	4 cut(s)	103, 109, 190, 554
Sau96I	GGNCC	2 cut(s)	206, 500
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	3 cut(s)	183, 440, 460
SexAI	ACCWGGT	1 cut(s)	429
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	53, 145
SsiI	CCGC	3 cut(s)	96, 123, 491
SspMI	CTAG	4 cut(s)	99, 200, 243, 552
SstI	GAGCTC	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	3 cut(s)	206, 300, 442
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	1 cut(s)	116
TasI	AATT	2 cut(s)	53, 145
TfiI	GAWTC	3 cut(s)	33, 155, 221
TscAI	CASTG	2 cut(s)	25, 529
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	3 cut(s)	5, 332, 358
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	25, 529
VpaK11BI	GGWCC	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	260
XspI	CTAG	4 cut(s)	99, 200, 243, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.