Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Forward (+)

57194269 .. 57195203

Gene Structure 935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G030480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCTCTTCCTATTACTCTAACGTCCACTCCCGGCTTTTTCCAACTCATTACAAAGAAACCTCAAAACCCATTTTCTTATCTTCATTCTTCATTCCTGACAACAACCTTTTCAATCATGAAATTACTTGGGCCAAATCCAATGGCGGCTACTCTCACCACCACTCCCCCTAACAGAATCTCAGAAACGTTCACAAAAATTAAAGTGATCGATTCGTGTGGATCGGACATAATCGAACTAGGGGTGCCCTACTCGAATCCGTTACTAGACGGTCCCGTCATACGTGATTCAGCTACTGGTTCCTTAGCTAGAGGGACAAACTTGAACAAGATTATCTCAATATTGTTGAAGGGTGTTATTCCACAGCTGTCTTGCCCTATCACTCTGTTCTCCTACTCTAACCCTATTATCAAGCATGGCATCGTAAACTTCATGTTGAAAATTAGTGAAGCAGGCGTAAGTGGGCTTGTGGTTCCAGATGTTCCTTTTGAAGAGACACAACTGTTGAGAATGGAAGCTGCGAAGAATGGCATTGAGTTGGTGCTGCTAACCACACCCACTACTACAAGAGATCGCATGAAAGACATTGTCCAAGATTCGGAGGGATTTGTGTACCAGGTCAGCACGGTGGGGGTTACTGGAGCTGTTAAAGAGGCAACAAACAAGGCAGTGGCGGTGGCGGAGTGGGGGGCTGATGGCGTTATTGTTGGCAGTGCCATTTTGAAGGTATTAGGTGAAGCTAGATCTCCATTGCAAGGGTTGAGAGAATTTGAAACTTTCACCAAATCTTTCAAGTCGGCTCTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

269

Amino Acids

28.91

Weight (kDa)

8.48

Isoelectric Point (pI)

26.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	60 - 221	2e-50	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	244
AciI	CCGC	3 cut(s)	146, 674, 680
AclI	AACGTT	1 cut(s)	188
AclWI	GGATC	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	767
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	2 cut(s)	598, 755
AgsI	TTSAA	8 cut(s)	114, 325, 349, 439, 491, 724, 773, 793
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	6 cut(s)	293, 308, 367, 518, 644, 740
AluI	AGCT	6 cut(s)	293, 308, 367, 518, 644, 740
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	518, 544
ApoI	RAATTY	1 cut(s)	767
AspS9I	GGNCC	2 cut(s)	131, 272
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	3 cut(s)	148, 746, 772
AvaII	GGWCC	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	505, 531
BccI	CCATC	1 cut(s)	689
BciT130I	CCWGG	1 cut(s)	617
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	4 cut(s)	239, 266, 309, 741
BglII	AGATCT	1 cut(s)	743
BisI	GCNGC	3 cut(s)	147, 519, 545
BlsI	GCNGC	3 cut(s)	148, 520, 546
Bme1390I	CCNGG	2 cut(s)	33, 617
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	131, 272
BmiI	GGNNCC	4 cut(s)	246, 274, 301, 474
BmrFI	CCNGG	2 cut(s)	33, 617
BmsI	GCATC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	304
BpuMI	CCSGG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	284
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 148, 178
Bsc4I	CCNNNNNNNGG	2 cut(s)	598, 755
Bse1I	ACTGG	2 cut(s)	301, 643
Bse3DI	GCAATG	1 cut(s)	749
BseBI	CCWGG	1 cut(s)	617
BseCI	ATCGAT	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	598, 755
BseMI	GCAATG	1 cut(s)	749
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	301, 643
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	505, 531
BshFI	GGCC	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	244
BshVI	ATCGAT	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	258, 328
BslI	CCNNNNNNNGG	2 cut(s)	598, 755
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	2 cut(s)	258, 328
BsnI	GGCC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	207, 221, 571, 743
BspACI	CCGC	3 cut(s)	146, 674, 680
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	194
BspDI	ATCGAT	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	4 cut(s)	246, 274, 301, 474
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	749
BsrI	ACTGG	2 cut(s)	301, 643
BssMI	GATC	4 cut(s)	207, 221, 571, 743
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	3 cut(s)	272, 504, 628
Bst6I	CTCTTC	2 cut(s)	12, 486
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	181, 304
BstKTI	GATC	4 cut(s)	210, 224, 574, 746
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	4 cut(s)	207, 221, 571, 743
BstNI	CCWGG	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	31, 615
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	505, 531
BstX2I	RGATCY	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	743
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	133
BsuTUI	ATCGAT	1 cut(s)	210
BtsI	GCAGTG	2 cut(s)	675, 718
BtsIMutI	CAGTG	2 cut(s)	675, 718
Cac8I	GCNNGC	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	131, 272
ClaI	ATCGAT	1 cut(s)	210
CsiI	ACCWGGT	1 cut(s)	615
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	4 cut(s)	118, 416, 433, 577
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	2 cut(s)	181, 304
DpnI	GATC	4 cut(s)	209, 223, 573, 745
DpnII	GATC	4 cut(s)	207, 221, 571, 743
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	12, 486
EarI	CTCTTC	2 cut(s)	12, 486
EciI	GGCGGA	1 cut(s)	695
Eco47I	GGWCC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	615
FaeI	CATG	4 cut(s)	121, 419, 436, 580
FaiI	YATR	6 cut(s)	119, 230, 281, 417, 434, 578
FaqI	GGGAC	2 cut(s)	258, 328
FatI	CATG	4 cut(s)	117, 415, 432, 576
Fnu4HI	GCNGC	3 cut(s)	147, 519, 545
Fsp4HI	GCNGC	3 cut(s)	147, 519, 545
FspBI	CTAG	4 cut(s)	239, 266, 309, 741
GluI	GCNGC	3 cut(s)	147, 519, 545
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	4 cut(s)	121, 419, 436, 580
HinfI	GANTC	5 cut(s)	177, 212, 256, 287, 596
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	3 cut(s)	148, 746, 772
Hpy166II	GTNNAC	4 cut(s)	27, 192, 427, 613
Hpy188I	TCNGA	3 cut(s)	184, 226, 601
Hpy188III	TCNNGA	3 cut(s)	97, 118, 476
Hpy8I	GTNNAC	4 cut(s)	27, 192, 427, 613
HpyAV	CCTTC	2 cut(s)	343, 718
HpyCH4III	ACNGT	3 cut(s)	272, 504, 628
HpyCH4IV	ACGT	3 cut(s)	23, 188, 283
HpyCH4V	TGCA	1 cut(s)	754
HpyF3I	CTNAG	2 cut(s)	181, 304
HpySE526I	ACGT	3 cut(s)	23, 188, 283
Hsp92II	CATG	4 cut(s)	121, 419, 436, 580
Kzo9I	GATC	4 cut(s)	207, 221, 571, 743
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	641
LpnPI	CCDG	8 cut(s)	46, 110, 282, 438, 489, 602, 624, 629
Lsp1109I	GCAGC	2 cut(s)	505, 531
LweI	GCATC	1 cut(s)	429
MabI	ACCWGGT	1 cut(s)	615
MaeI	CTAG	4 cut(s)	239, 266, 309, 741
MaeII	ACGT	3 cut(s)	23, 188, 283
MaeIII	GTNAC	2 cut(s)	261, 634
MalI	GATC	4 cut(s)	209, 223, 573, 745
MboI	GATC	4 cut(s)	207, 221, 571, 743
MboII	GAAGA	4 cut(s)	74, 81, 503, 535
MflI	RGATCY	1 cut(s)	743
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	122, 198, 441, 767
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	4 cut(s)	72, 305, 595, 646
MseI	TTAA	3 cut(s)	201, 648, 808
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	2 cut(s)	33, 617
MvaI	CCWGG	1 cut(s)	617
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	207, 221, 571, 743
NlaIII	CATG	4 cut(s)	121, 419, 436, 580
NlaIV	GGNNCC	4 cut(s)	246, 274, 301, 474
PagI	TCATGA	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	5 cut(s)	177, 212, 256, 287, 596
PflFI	GACNNNGTC	1 cut(s)	587
PkrI	GCNGC	3 cut(s)	148, 520, 546
Ppu21I	YACGTR	1 cut(s)	284
Psp1406I	AACGTT	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	4 cut(s)	246, 274, 301, 474
PspPI	GGNCC	2 cut(s)	131, 272
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	743
PsyI	GACNNNGTC	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	201, 648, 808
SatI	GCNGC	3 cut(s)	147, 519, 545
Sau3AI	GATC	4 cut(s)	207, 221, 571, 743
Sau96I	GGNCC	2 cut(s)	131, 272
ScrFI	CCNGG	2 cut(s)	33, 617
SduI	GDGCHC	1 cut(s)	249
SexAI	ACCWGGT	1 cut(s)	615
SfaNI	GCATC	1 cut(s)	429
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	4 cut(s)	122, 198, 441, 767
SsiI	CCGC	3 cut(s)	146, 674, 680
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	4 cut(s)	239, 266, 309, 741
StyD4I	CCNGG	2 cut(s)	31, 615
TaaI	ACNGT	3 cut(s)	272, 504, 628
TaiI	ACGT	3 cut(s)	26, 191, 286
TaqI	TCGA	3 cut(s)	210, 234, 254
TasI	AATT	4 cut(s)	122, 198, 441, 767
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	5 cut(s)	177, 212, 256, 287, 596
Tru1I	TTAA	3 cut(s)	201, 648, 808
Tru9I	TTAA	3 cut(s)	201, 648, 808
TscAI	CASTG	2 cut(s)	675, 718
TseI	GCWGC	2 cut(s)	518, 544
TspDTI	ATGAA	5 cut(s)	74, 81, 134, 421, 593
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	2 cut(s)	675, 718
Tth111I	GACNNNGTC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	767
XspI	CTAG	4 cut(s)	239, 266, 309, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.