Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Reverse (-)

15735008 .. 15735958

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G144500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTACTTCTCTGAAATTCACTTCTACTGGCTTTCTTCAACTTAAGAAACCTCAAAACCCATTTCTTCTTCACTCTCCATCGCAAGCATCAACCGTTTCAGTCAAGAGACGTCTTATAACACCAATGGCTGCTCTCACCTTGACCCCTACCATCAATCTCTCTCAAACTTTCACAAAATTGAAGAACCAACGGAAAGTAGCATTTATCCCTTACATCACTGCCGGTGATCCCGACCTTTCAACCACGGCGCAAGCGCTGAAGGTGCTCGATTCTAGTGGGGCGGACGTGATCGAGTTAGGTGTGCCACACTCTGATCCAATACTAGACGGTCCAGTTATTCAGGCTTCAGTCACTCGTTCCTTAGCTAGGGGGACCAATTTCAATTCTATTATGTCAATGTTAAAGGATGCGGTACCACAATTGTCTTGTCCAATCGTTTTATTTTCGTACCACAACCCAATTATAAAGCATGGTGTTGAAAAATTCATGTCCACAATTAGCGACGTTGGGGTACATGGTCTTGTGGTTCCAGATGCTCCATTTGAAGAGACAAAAGGCTTGAGAAAGGAGGCTGTGAAGAATAAGATTGAGTTGGTATTACTAACTACACCCAATACGCCAATAGATCGAATGAAGGACATAGTTGAAGCTTCAGAAGGATTTGTATACCTTGTGAGCACGGTGGGAGTTACCGGTGCCCGTGAATCGGTGAACGAACAAGTTCCGAGGCTTTTAAGGGAAATTAAAGAGGCAACAACCAAGCCTGTGGCAGTTGGTTTTGGGCTATCCAAGCCTGAACATGTGAAACAAGTAGCAGAGTGGGGAGCATCTGGTGTTATTGTTGGTAGTGCCATTGTGAAGGTGTTGGGGGAAGCCAAGTCTCCTAAAGAAGGGTTGAAAGCACTTGAAACTTTCACCAAGTCTTTCACATCTGCACTCCTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

317

Amino Acids

33.91

Weight (kDa)

9.37

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	119, 467
AatII	GACGTC	1 cut(s)	115
Acc65I	GGTACC	1 cut(s)	415
AccB1I	GGYRCC	2 cut(s)	415, 698
AccI	GTMKAC	1 cut(s)	669
AciI	CCGC	2 cut(s)	284, 413
AclWI	GGATC	2 cut(s)	224, 311
AcsI	RAATTY	2 cut(s)	17, 485
AcuI	CTGAAG	3 cut(s)	281, 333, 639
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	3 cut(s)	417, 452, 516
AfeI	AGCGCT	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	369, 709, 893
AflII	CTTAAG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	802
AgeI	ACCGGT	1 cut(s)	695
AgsI	TTSAA	9 cut(s)	41, 184, 243, 385, 482, 548, 650, 901, 911
AjiI	CACGTC	1 cut(s)	289
AluBI	AGCT	2 cut(s)	368, 653
AluI	AGCT	2 cut(s)	368, 653
Alw21I	GWGCWC	2 cut(s)	270, 683
Alw26I	GTCTC	3 cut(s)	103, 545, 888
AlwI	GGATC	2 cut(s)	224, 311
Aor51HI	AGCGCT	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	17, 485
AsiGI	ACCGGT	1 cut(s)	695
Asp700I	GAANNNNTTC	1 cut(s)	723
Asp718I	GGTACC	1 cut(s)	415
AspLEI	GCGC	2 cut(s)	253, 259
AspS9I	GGNCC	2 cut(s)	332, 375
AsuHPI	GGTGA	4 cut(s)	130, 239, 724, 910
AvaII	GGWCC	2 cut(s)	332, 375
BaeGI	GKGCMC	1 cut(s)	703
BanI	GGYRCC	2 cut(s)	415, 698
Bbv12I	GWGCWC	2 cut(s)	270, 683
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	88, 161
BceAI	ACGGC	1 cut(s)	264
BcoDI	GTCTC	3 cut(s)	103, 545, 888
BfaI	CTAG	3 cut(s)	276, 326, 369
BfoI	RGCGCY	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme18I	GGWCC	2 cut(s)	332, 375
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	332, 375
BmiI	GGNNCC	4 cut(s)	376, 417, 531, 700
BmsI	GCATC	4 cut(s)	98, 400, 526, 839
Bpu10I	CCTNAGC	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	583
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	246, 728, 943
BsaWI	WCCGGW	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	3 cut(s)	369, 709, 893
Bse118I	RCCGGY	2 cut(s)	224, 695
Bse1I	ACTGG	2 cut(s)	34, 335
BseDI	CCNNGG	3 cut(s)	246, 728, 943
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	3 cut(s)	369, 709, 893
BseNI	ACTGG	2 cut(s)	34, 335
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	921
BshNI	GGYRCC	2 cut(s)	415, 698
BshTI	ACCGGT	1 cut(s)	695
BsiHKAI	GWGCWC	2 cut(s)	270, 683
BsiSI	CCGG	2 cut(s)	225, 696
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	3 cut(s)	369, 709, 893
BsmAI	GTCTC	3 cut(s)	103, 545, 888
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	388
Bsp1286I	GDGCHC	3 cut(s)	270, 683, 703
Bsp143I	GATC	4 cut(s)	229, 291, 316, 628
BspACI	CCGC	2 cut(s)	284, 413
BspLI	GGNNCC	4 cut(s)	376, 417, 531, 700
BspPI	GGATC	2 cut(s)	224, 311
BspT107I	GGYRCC	2 cut(s)	415, 698
BspTI	CTTAAG	1 cut(s)	44
BsrFI	RCCGGY	2 cut(s)	224, 695
BsrI	ACTGG	2 cut(s)	34, 335
BssAI	RCCGGY	2 cut(s)	224, 695
BssECI	CCNNGG	3 cut(s)	246, 728, 943
BssMI	GATC	4 cut(s)	229, 291, 316, 628
BssNAI	GTATAC	1 cut(s)	670
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	943
Bst1107I	GTATAC	1 cut(s)	670
Bst4CI	ACNGT	3 cut(s)	97, 332, 685
Bst6I	CTCTTC	1 cut(s)	543
BstACI	GRCGYC	1 cut(s)	112
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	87, 255
BstDEI	CTNAG	1 cut(s)	364
BstDSI	CCRYGG	1 cut(s)	246
BstENI	CCTNNNNNAGG	2 cut(s)	367, 891
BstF5I	GGATG	1 cut(s)	415
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	2 cut(s)	253, 259
BstKTI	GATC	4 cut(s)	232, 294, 319, 631
BstMAI	GTCTC	3 cut(s)	103, 545, 888
BstMBI	GATC	4 cut(s)	229, 291, 316, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 793
BstNSI	RCATGY	1 cut(s)	806
BstSLI	GKGCMC	1 cut(s)	703
BstV1I	GCAGC	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	769
BstZ17I	GTATAC	1 cut(s)	670
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	87, 255
CfoI	GCGC	2 cut(s)	253, 259
Cfr10I	RCCGGY	2 cut(s)	224, 695
Cfr13I	GGNCC	2 cut(s)	332, 375
Csp6I	GTAC	3 cut(s)	416, 451, 515
CspAI	ACCGGT	1 cut(s)	695
CviAII	CATG	4 cut(s)	473, 490, 518, 803
CviQI	GTAC	3 cut(s)	416, 451, 515
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	4 cut(s)	231, 293, 318, 630
DpnII	GATC	4 cut(s)	229, 291, 316, 628
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	943
Eco47I	GGWCC	2 cut(s)	332, 375
Eco47III	AGCGCT	1 cut(s)	258
Eco57I	CTGAAG	3 cut(s)	281, 333, 639
EcoNI	CCTNNNNNAGG	2 cut(s)	367, 891
EcoT14I	CCWWGG	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	943
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	4 cut(s)	476, 493, 521, 806
FaiI	YATR	9 cut(s)	119, 395, 467, 474, 491, 519, 644, 670, 804
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	4 cut(s)	472, 489, 517, 802
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	3 cut(s)	276, 326, 369
GlaI	GCGC	2 cut(s)	252, 258
GluI	GCNGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	260
HapII	CCGG	2 cut(s)	225, 696
HhaI	GCGC	2 cut(s)	253, 259
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	4 cut(s)	476, 493, 521, 806
Hin6I	GCGC	2 cut(s)	251, 257
HinP1I	GCGC	2 cut(s)	251, 257
HindIII	AAGCTT	1 cut(s)	651
HinfI	GANTC	2 cut(s)	272, 707
HpaII	CCGG	2 cut(s)	225, 696
HphI	GGTGA	4 cut(s)	130, 239, 724, 910
Hpy166II	GTNNAC	3 cut(s)	495, 670, 715
Hpy188I	TCNGA	4 cut(s)	15, 316, 658, 729
Hpy188III	TCNNGA	3 cut(s)	106, 233, 533
Hpy8I	GTNNAC	3 cut(s)	495, 670, 715
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	5 cut(s)	256, 631, 653, 856, 887
HpyCH4III	ACNGT	3 cut(s)	97, 332, 685
HpyCH4IV	ACGT	3 cut(s)	112, 288, 507
HpyCH4V	TGCA	1 cut(s)	938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 793
HpyF3I	CTNAG	1 cut(s)	364
HpySE526I	ACGT	3 cut(s)	112, 288, 507
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	476, 493, 521, 806
HspAI	GCGC	2 cut(s)	251, 257
KpnI	GGTACC	1 cut(s)	419
Kzo9I	GATC	4 cut(s)	229, 291, 316, 628
LmnI	GCTCC	2 cut(s)	544, 827
LpnPI	CCDG	9 cut(s)	15, 238, 329, 348, 546, 709, 780, 810, 819
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	4 cut(s)	98, 400, 526, 839
MaeI	CTAG	3 cut(s)	276, 326, 369
MaeII	ACGT	3 cut(s)	112, 288, 507
MaeIII	GTNAC	2 cut(s)	352, 691
MalI	GATC	4 cut(s)	231, 293, 318, 630
MboI	GATC	4 cut(s)	229, 291, 316, 628
MboII	GAAGA	6 cut(s)	29, 59, 62, 196, 560, 592
MfeI	CAATTG	1 cut(s)	422
MhlI	GDGCHC	3 cut(s)	270, 683, 703
MluCI	AATT	9 cut(s)	17, 179, 379, 385, 422, 462, 485, 498, 744
MnlI	CCTC	4 cut(s)	63, 565, 723, 745
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	4 cut(s)	45, 404, 737, 747
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	2 cut(s)	225, 696
MunI	CAATTG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	265, 793
NdeII	GATC	4 cut(s)	229, 291, 316, 628
NlaIII	CATG	4 cut(s)	476, 493, 521, 806
NlaIV	GGNNCC	4 cut(s)	376, 417, 531, 700
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	806
PciI	ACATGT	1 cut(s)	802
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	272, 707
PinAI	ACCGGT	1 cut(s)	695
PkrI	GCNGC	1 cut(s)	133
PscI	ACATGT	1 cut(s)	802
PsiI	TTATAA	2 cut(s)	119, 467
PspN4I	GGNNCC	4 cut(s)	376, 417, 531, 700
PspPI	GGNCC	2 cut(s)	332, 375
RsaI	GTAC	3 cut(s)	417, 452, 516
RsaNI	GTAC	3 cut(s)	416, 451, 515
SaqAI	TTAA	4 cut(s)	45, 404, 737, 747
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	4 cut(s)	229, 291, 316, 628
Sau96I	GGNCC	2 cut(s)	332, 375
SduI	GDGCHC	3 cut(s)	270, 683, 703
SfaNI	GCATC	4 cut(s)	98, 400, 526, 839
SinI	GGWCC	2 cut(s)	332, 375
SmlI	CTYRAG	2 cut(s)	44, 562
SmoI	CTYRAG	2 cut(s)	44, 562
Sse9I	AATT	9 cut(s)	17, 179, 379, 385, 422, 462, 485, 498, 744
SsiI	CCGC	2 cut(s)	284, 413
SspMI	CTAG	3 cut(s)	276, 326, 369
StyI	CCWWGG	1 cut(s)	943
TaaI	ACNGT	3 cut(s)	97, 332, 685
TaiI	ACGT	3 cut(s)	115, 291, 510
TaqI	TCGA	3 cut(s)	270, 294, 631
TasI	AATT	9 cut(s)	17, 179, 379, 385, 422, 462, 485, 498, 744
TfiI	GAWTC	2 cut(s)	272, 707
Tru1I	TTAA	4 cut(s)	45, 404, 737, 747
Tru9I	TTAA	4 cut(s)	45, 404, 737, 747
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	478, 650
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	226
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	332, 375
XagI	CCTNNNNNAGG	2 cut(s)	367, 891
XapI	RAATTY	2 cut(s)	17, 485
XceI	RCATGY	1 cut(s)	806
XmiI	GTMKAC	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	3 cut(s)	276, 326, 369
ZraI	GACGTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.