Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Reverse (-)

15653922 .. 15654869

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G144200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCTACTTCTCTGAAATCCACTGCTACTGGCTTTCTTCAACTTAAGAAACCTCAAAACCCATTTCTTCATCATTCTCCATCCCAAGCATCAACCGTTTCCATAAAGAGACATCTTCTAACACCAATGGCTGCTCTCACCTTGCCTACCATCACTCTCTCTCAAACTTTCACAAAATTGAAGAACCAACGGAAAGTAGCATTTATCCCTTACATCACTGCCGGTGATCCCGACCTTTCAACCACGGCGCAAGCGCTGAAGGTGCTCGATTCTAGTGGGGCGGACGTGATCGAGTTAGGTGTGCCACACTCTGATCCAATACTAGACGGTCCAGTTATTCAGGCTTCAGTCACTCGTTCCTTAGCTAGAGGGACCAATTTCAATTCTATTATGTCAATGTTAAAGAATGTGGTCCCACAATTGTCTTGTCCAATCGTTCTATTTTCGTACCATAACCCAATTATAAAGCATGGTATTGAAAATTTCATGTCCACAATTAGCGACGTTGGGGTACATGGTCTTGTGGTTCCAGATGCTCCATTTGAAGAGACAAAAAGCTTGAGAAAGGAGGCTGTGAAGAATAATGTTGAGTTGGCATTACTAACTACACCCACTACAACAATAGATCGAATGAAGAAGATAGTTGAAGCTTCAGAAGGATTTGTATACCTTGTGAGCACTGTGGGAGTTACCGGTGCCCGTGAATCGGTGAACGAACAAATTCCGAGGCTTTTAAGGGAAATTAGAGAGGCAACAACCAAGCCTGTGGCAGTTGGTTTTGGGCTATCAAAGCCTGAACATGTGAAACAAGTAGCAGAGTGGGGAGCTGATGGTGTTATTGTTGGTAGTGCCATTGTGAAGGTGTTGGGGGAAGCCAAGTCACCCGAAGAAGGGTTGAAAGCACTTGAAACTTTCACCAAGTCTTTCACATCTGCACTCCTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

316

Amino Acids

33.81

Weight (kDa)

9.04

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	666
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	221, 308
AcsI	RAATTY	2 cut(s)	481, 720
AcuI	CTGAAG	3 cut(s)	278, 330, 636
AfaI	GTAC	2 cut(s)	449, 513
AfeI	AGCGCT	1 cut(s)	255
AfiI	CCNNNNNNNGG	3 cut(s)	706, 890, 891
AflII	CTTAAG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	799
AgeI	ACCGGT	1 cut(s)	692
AgsI	TTSAA	9 cut(s)	41, 181, 240, 382, 479, 545, 647, 898, 908
AjiI	CACGTC	1 cut(s)	286
AluBI	AGCT	4 cut(s)	365, 558, 650, 827
AluI	AGCT	4 cut(s)	365, 558, 650, 827
Alw21I	GWGCWC	2 cut(s)	267, 680
Alw26I	GTCTC	2 cut(s)	103, 542
AlwI	GGATC	2 cut(s)	221, 308
Aor51HI	AGCGCT	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	481, 720
AsiGI	ACCGGT	1 cut(s)	692
Asp700I	GAANNNNTTC	1 cut(s)	720
AspLEI	GCGC	2 cut(s)	250, 256
AspS9I	GGNCC	3 cut(s)	329, 372, 412
AsuHPI	GGTGA	5 cut(s)	130, 236, 721, 873, 907
AvaII	GGWCC	3 cut(s)	329, 372, 412
BaeGI	GKGCMC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	695
Bbv12I	GWGCWC	2 cut(s)	267, 680
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	3 cut(s)	88, 158, 824
BceAI	ACGGC	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	103, 542
BfaI	CTAG	3 cut(s)	273, 323, 366
BfoI	RGCGCY	1 cut(s)	257
BfrI	CTTAAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme18I	GGWCC	3 cut(s)	329, 372, 412
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	329, 372, 412
BmiI	GGNNCC	4 cut(s)	373, 414, 528, 697
BmsI	GCATC	2 cut(s)	98, 523
Bpu10I	CCTNAGC	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	580
BsaJI	CCNNGG	3 cut(s)	243, 725, 940
BsaWI	WCCGGW	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	3 cut(s)	706, 890, 891
Bse118I	RCCGGY	2 cut(s)	221, 692
Bse1I	ACTGG	2 cut(s)	34, 332
BseDI	CCNNGG	3 cut(s)	243, 725, 940
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	3 cut(s)	706, 890, 891
BseNI	ACTGG	2 cut(s)	34, 332
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	918
BshNI	GGYRCC	1 cut(s)	695
BshTI	ACCGGT	1 cut(s)	692
BsiHKAI	GWGCWC	2 cut(s)	267, 680
BsiSI	CCGG	2 cut(s)	222, 693
BslFI	GGGAC	2 cut(s)	385, 398
BslI	CCNNNNNNNGG	3 cut(s)	706, 890, 891
BsmAI	GTCTC	2 cut(s)	103, 542
BsmFI	GGGAC	2 cut(s)	385, 398
Bsp1286I	GDGCHC	3 cut(s)	267, 680, 700
Bsp143I	GATC	4 cut(s)	226, 288, 313, 625
BspACI	CCGC	1 cut(s)	281
BspLI	GGNNCC	4 cut(s)	373, 414, 528, 697
BspPI	GGATC	2 cut(s)	221, 308
BspT107I	GGYRCC	1 cut(s)	695
BspTI	CTTAAG	1 cut(s)	44
BsrFI	RCCGGY	2 cut(s)	221, 692
BsrI	ACTGG	2 cut(s)	34, 332
BssAI	RCCGGY	2 cut(s)	221, 692
BssECI	CCNNGG	3 cut(s)	243, 725, 940
BssMI	GATC	4 cut(s)	226, 288, 313, 625
BssNAI	GTATAC	1 cut(s)	667
BssT1I	CCWWGG	1 cut(s)	940
Bst1107I	GTATAC	1 cut(s)	667
Bst4CI	ACNGT	3 cut(s)	97, 329, 682
Bst6I	CTCTTC	1 cut(s)	540
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	361
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	250, 256
BstKTI	GATC	4 cut(s)	229, 291, 316, 628
BstMAI	GTCTC	2 cut(s)	103, 542
BstMBI	GATC	4 cut(s)	226, 288, 313, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 790
BstNSI	RCATGY	1 cut(s)	803
BstSLI	GKGCMC	1 cut(s)	700
BstV1I	GCAGC	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstZ17I	GTATAC	1 cut(s)	667
BtgI	CCRYGG	1 cut(s)	243
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	2 cut(s)	21, 216
BtsIMutI	CAGTG	3 cut(s)	21, 216, 678
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	2 cut(s)	250, 256
Cfr10I	RCCGGY	2 cut(s)	221, 692
Cfr13I	GGNCC	3 cut(s)	329, 372, 412
Csp6I	GTAC	2 cut(s)	448, 512
CspAI	ACCGGT	1 cut(s)	692
CviAII	CATG	4 cut(s)	470, 487, 515, 800
CviQI	GTAC	2 cut(s)	448, 512
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	4 cut(s)	228, 290, 315, 627
DpnII	GATC	4 cut(s)	226, 288, 313, 625
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	940
Eco47I	GGWCC	3 cut(s)	329, 372, 412
Eco47III	AGCGCT	1 cut(s)	255
Eco57I	CTGAAG	3 cut(s)	278, 330, 636
EcoT14I	CCWWGG	1 cut(s)	940
ErhI	CCWWGG	1 cut(s)	940
FaeI	CATG	4 cut(s)	473, 490, 518, 803
FaiI	YATR	9 cut(s)	104, 392, 453, 464, 471, 488, 516, 667, 801
FaqI	GGGAC	2 cut(s)	385, 398
FatI	CATG	4 cut(s)	469, 486, 514, 799
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	3 cut(s)	273, 323, 366
GlaI	GCGC	2 cut(s)	249, 255
GluI	GCNGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	257
HapII	CCGG	2 cut(s)	222, 693
HhaI	GCGC	2 cut(s)	250, 256
Hin1II	CATG	4 cut(s)	473, 490, 518, 803
Hin6I	GCGC	2 cut(s)	248, 254
HinP1I	GCGC	2 cut(s)	248, 254
HindIII	AAGCTT	2 cut(s)	556, 648
HinfI	GANTC	2 cut(s)	269, 704
HpaII	CCGG	2 cut(s)	222, 693
HphI	GGTGA	5 cut(s)	130, 236, 721, 873, 907
Hpy166II	GTNNAC	3 cut(s)	492, 667, 712
Hpy188I	TCNGA	4 cut(s)	15, 313, 655, 726
Hpy188III	TCNNGA	2 cut(s)	230, 530
Hpy8I	GTNNAC	3 cut(s)	492, 667, 712
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	4 cut(s)	253, 650, 853, 884
HpyCH4III	ACNGT	3 cut(s)	97, 329, 682
HpyCH4IV	ACGT	2 cut(s)	285, 504
HpyCH4V	TGCA	1 cut(s)	935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 790
HpyF3I	CTNAG	1 cut(s)	361
HpySE526I	ACGT	2 cut(s)	285, 504
Hsp92II	CATG	4 cut(s)	473, 490, 518, 803
HspAI	GCGC	2 cut(s)	248, 254
Kzo9I	GATC	4 cut(s)	226, 288, 313, 625
LmnI	GCTCC	2 cut(s)	541, 824
LpnPI	CCDG	8 cut(s)	15, 235, 326, 345, 543, 706, 777, 807
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	2 cut(s)	98, 523
MaeI	CTAG	3 cut(s)	273, 323, 366
MaeII	ACGT	2 cut(s)	285, 504
MaeIII	GTNAC	3 cut(s)	349, 688, 879
MalI	GATC	4 cut(s)	228, 290, 315, 627
MboI	GATC	4 cut(s)	226, 288, 313, 625
MboII	GAAGA	9 cut(s)	29, 59, 107, 193, 557, 589, 646, 649, 899
MfeI	CAATTG	1 cut(s)	419
MhlI	GDGCHC	3 cut(s)	267, 680, 700
MluCI	AATT	9 cut(s)	176, 376, 382, 419, 459, 481, 495, 720, 741
MnlI	CCTC	5 cut(s)	63, 362, 562, 720, 742
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	3 cut(s)	45, 401, 734
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	2 cut(s)	222, 693
MunI	CAATTG	1 cut(s)	419
MwoI	GCNNNNNNNGC	2 cut(s)	262, 790
NdeII	GATC	4 cut(s)	226, 288, 313, 625
NlaIII	CATG	4 cut(s)	473, 490, 518, 803
NlaIV	GGNNCC	4 cut(s)	373, 414, 528, 697
NmuCI	GTSAC	2 cut(s)	349, 879
NspI	RCATGY	1 cut(s)	803
PciI	ACATGT	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	269, 704
PinAI	ACCGGT	1 cut(s)	692
PkrI	GCNGC	1 cut(s)	133
PscI	ACATGT	1 cut(s)	799
PsiI	TTATAA	1 cut(s)	464
PspN4I	GGNNCC	4 cut(s)	373, 414, 528, 697
PspPI	GGNCC	3 cut(s)	329, 372, 412
RsaI	GTAC	2 cut(s)	449, 513
RsaNI	GTAC	2 cut(s)	448, 512
SaqAI	TTAA	3 cut(s)	45, 401, 734
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	4 cut(s)	226, 288, 313, 625
Sau96I	GGNCC	3 cut(s)	329, 372, 412
SduI	GDGCHC	3 cut(s)	267, 680, 700
SfaNI	GCATC	2 cut(s)	98, 523
SinI	GGWCC	3 cut(s)	329, 372, 412
SmlI	CTYRAG	2 cut(s)	44, 559
SmoI	CTYRAG	2 cut(s)	44, 559
Sse9I	AATT	9 cut(s)	176, 376, 382, 419, 459, 481, 495, 720, 741
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	3 cut(s)	273, 323, 366
StyI	CCWWGG	1 cut(s)	940
TaaI	ACNGT	3 cut(s)	97, 329, 682
TaiI	ACGT	2 cut(s)	288, 507
TaqI	TCGA	3 cut(s)	267, 291, 628
TasI	AATT	9 cut(s)	176, 376, 382, 419, 459, 481, 495, 720, 741
TfiI	GAWTC	2 cut(s)	269, 704
Tru1I	TTAA	3 cut(s)	45, 401, 734
Tru9I	TTAA	3 cut(s)	45, 401, 734
TscAI	CASTG	3 cut(s)	28, 223, 685
TseFI	GTSAC	2 cut(s)	349, 879
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	2 cut(s)	349, 879
TspDTI	ATGAA	3 cut(s)	59, 475, 647
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	3 cut(s)	28, 223, 685
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	3 cut(s)	329, 372, 412
XapI	RAATTY	2 cut(s)	481, 720
XceI	RCATGY	1 cut(s)	803
XmiI	GTMKAC	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	3 cut(s)	273, 323, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.