Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Reverse (-)

4847752 .. 4848721

Gene Structure 970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54759

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTATTCCTAGTCATCTTACTGCTCCCGGCTTCATGTATACAAAGAAACCCCAAAACCCAATTCAACAACAGCTTCATTCTCCATCCCAAACATCATTAACCTTACCAATCAAAAGAGTTCTTAGGCCAAATCTAATGGCTGCTTTCACTCACCCTCGTGCCCCTAGCATAAGCATCTCACAAACTTTCACAAAATTGAAGTCCCAAGGGAAAGTGGCATTCATTCCCTACATCAACGCCGGCGATCCAGATCTCTCAACAACCGGGGCGGCATTGAAGGTGCTCGATTCTTGTGGATCAGACGTAATCGAACTAGGCCTTCCCTACTCCGATCCGTTACTAGACGGTCCTGTCATATGTGCTTCAGCCACCCGTTCCTTGGCTAGAGGGACAAACTTCAACAAAGTCATCTCAATGTTGAAGGAAGTTGTTCCACAACTGTCTTGCCCCATTGTGTACGTACGTGGGCTTGTGGTTCCGGATGTTCCTTTTGAAGAGACACAAATTTTAAGGAAGGAAGCTGTGAAAAATAACATCGAGTTGGTGCTACTGACCACTCCAGCTACTACAACAGACCGAATGAAAGACATCGTCAAAGCTTCGGAGGGATTTGTGTACCTAGTGAGCACGGTGGGGGTCACTGGAGCTCGTGCTCATGTGAACGAACAAGTTCCGAGTCTTTTGAGGGAGATTAAGGATGCCACCAGCAAGGCAGTGGCGGTTGGGTTTGGGCTGTCTAAGCCTGAACATGTGAAACAGGTGGTTGTGTGGGGGGCTGATGGCGTTATTGTTGGTAGTGCCATTGTGAAGGTTCTAGGTGAAGCTAGATCTCCTCTTGAAGGGTTGAGAGAACTTGAAACTCTCACCAAGTCTTTCAAGTCTGCTCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

298

Amino Acids

32.01

Weight (kDa)

9.28

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	64 - 154	1.1e-27	Tryptophan synthase alpha chain
Trp_syntA	PF00290	154 - 296	7.1e-44	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	481
AciI	CCGC	2 cut(s)	272, 722
AclWI	GGATC	3 cut(s)	242, 307, 329
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	3 cut(s)	461, 465, 620
AfiI	CCNNNNNNNGG	2 cut(s)	382, 842
AflIII	ACRYGT	1 cut(s)	751
AgsI	TTSAA	9 cut(s)	68, 202, 280, 403, 424, 497, 842, 860, 880
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	6 cut(s)	76, 524, 566, 602, 650, 827
AluI	AGCT	6 cut(s)	76, 524, 566, 602, 650, 827
Alw21I	GWGCWC	4 cut(s)	288, 632, 652, 658
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	3 cut(s)	242, 307, 329
Aor13HI	TCCGGA	1 cut(s)	481
AoxI	GGCC	2 cut(s)	128, 319
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	507
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	2 cut(s)	432, 672
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	2 cut(s)	30, 268
AsuHPI	GGTGA	3 cut(s)	146, 833, 859
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	652
BauI	CACGAG	2 cut(s)	159, 651
Bbv12I	GWGCWC	4 cut(s)	288, 632, 652, 658
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	2 cut(s)	94, 776
BcnI	CCSGG	2 cut(s)	30, 268
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	8 cut(s)	12, 168, 317, 344, 387, 623, 818, 828
BglII	AGATCT	2 cut(s)	253, 830
BisI	GCNGC	2 cut(s)	144, 273
BlsI	GCNGC	2 cut(s)	145, 274
Bme1390I	CCNGG	2 cut(s)	30, 268
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	2 cut(s)	30, 268
BmsI	GCATC	2 cut(s)	186, 691
BpmI	CTGGAG	2 cut(s)	546, 666
BpuMI	CCSGG	2 cut(s)	30, 268
BsaAI	YACGTR	2 cut(s)	463, 467
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	208, 267, 381
BsaWI	WCCGGW	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 842
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	481
BseDI	CCNNGG	3 cut(s)	208, 267, 381
BseGI	GGATG	3 cut(s)	86, 490, 706
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	382, 842
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	1 cut(s)	825
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	2 cut(s)	130, 321
BsiHKAI	GWGCWC	4 cut(s)	288, 632, 652, 658
BsiSI	CCGG	4 cut(s)	30, 243, 267, 482
BsiWI	CGTACG	1 cut(s)	463
BslFI	GGGAC	2 cut(s)	190, 406
BslI	CCNNNNNNNGG	2 cut(s)	382, 842
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	2 cut(s)	190, 406
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	130, 321
Bsp1286I	GDGCHC	5 cut(s)	166, 288, 632, 652, 658
Bsp13I	TCCGGA	1 cut(s)	481
Bsp143I	GATC	5 cut(s)	247, 253, 299, 334, 830
BspACI	CCGC	2 cut(s)	272, 722
BspANI	GGCC	2 cut(s)	130, 321
BspEI	TCCGGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	480
BspPI	GGATC	3 cut(s)	242, 307, 329
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	649
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	208, 267, 381
BssMI	GATC	5 cut(s)	247, 253, 299, 334, 830
BssNAI	GTATAC	1 cut(s)	42
BssSI	CACGAG	2 cut(s)	159, 651
BssT1I	CCWWGG	2 cut(s)	208, 381
Bst1107I	GTATAC	1 cut(s)	42
Bst2BI	CACGAG	2 cut(s)	159, 651
Bst4CI	ACNGT	3 cut(s)	350, 444, 634
Bst6I	CTCTTC	1 cut(s)	492
BstBAI	YACGTR	2 cut(s)	463, 467
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	2 cut(s)	125, 741
BstENI	CCTNNNNNAGG	1 cut(s)	840
BstF5I	GGATG	3 cut(s)	86, 490, 706
BstKTI	GATC	5 cut(s)	250, 256, 302, 337, 833
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	5 cut(s)	247, 253, 299, 334, 830
BstMWI	GCNNNNNNNGC	1 cut(s)	742
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	28, 266
BstSLI	GKGCMC	1 cut(s)	166
BstSNI	TACGTA	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	2 cut(s)	253, 830
BstYI	RGATCY	2 cut(s)	253, 830
BstZ17I	GTATAC	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	130, 321
BtsCI	GGATG	3 cut(s)	86, 490, 706
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	2 cut(s)	642, 723
Cac8I	GCNNGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	460, 464, 619
CviAII	CATG	3 cut(s)	37, 659, 752
CviQI	GTAC	3 cut(s)	460, 464, 619
DdeI	CTNAG	2 cut(s)	125, 741
DpnI	GATC	5 cut(s)	249, 255, 301, 336, 832
DpnII	GATC	5 cut(s)	247, 253, 299, 334, 830
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	650
Eco105I	TACGTA	1 cut(s)	463
Eco130I	CCWWGG	2 cut(s)	208, 381
Eco147I	AGGCCT	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	650
EcoNI	CCTNNNNNAGG	1 cut(s)	840
EcoT14I	CCWWGG	2 cut(s)	208, 381
EcoT38I	GRGCYC	1 cut(s)	652
ErhI	CCWWGG	2 cut(s)	208, 381
FaeI	CATG	3 cut(s)	40, 662, 755
FaiI	YATR	7 cut(s)	38, 42, 173, 359, 361, 660, 753
FaqI	GGGAC	2 cut(s)	190, 406
FatI	CATG	3 cut(s)	36, 658, 751
FauNDI	CATATG	1 cut(s)	359
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	144, 273
FokI	GGATG	3 cut(s)	73, 497, 713
FriOI	GRGCYC	1 cut(s)	652
Fsp4HI	GCNGC	2 cut(s)	144, 273
FspBI	CTAG	8 cut(s)	12, 168, 317, 344, 387, 623, 818, 828
GluI	GCNGC	2 cut(s)	144, 273
GsuI	CTGGAG	2 cut(s)	546, 666
HaeIII	GGCC	2 cut(s)	130, 321
HapII	CCGG	4 cut(s)	30, 243, 267, 482
Hin1II	CATG	3 cut(s)	40, 662, 755
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	2 cut(s)	290, 679
HpaII	CCGG	4 cut(s)	30, 243, 267, 482
HphI	GGTGA	3 cut(s)	146, 833, 859
Hpy166II	GTNNAC	4 cut(s)	42, 460, 619, 664
Hpy188I	TCNGA	4 cut(s)	304, 334, 607, 678
Hpy188III	TCNNGA	3 cut(s)	251, 482, 839
Hpy8I	GTNNAC	4 cut(s)	42, 460, 619, 664
HpyAV	CCTTC	6 cut(s)	274, 332, 418, 511, 805, 836
HpyCH4III	ACNGT	3 cut(s)	350, 444, 634
HpyCH4IV	ACGT	3 cut(s)	306, 462, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	742
HpyF3I	CTNAG	2 cut(s)	125, 741
HpySE526I	ACGT	3 cut(s)	306, 462, 466
Hsp92II	CATG	3 cut(s)	40, 662, 755
Kpn2I	TCCGGA	1 cut(s)	481
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	247, 253, 299, 334, 830
LmnI	GCTCC	2 cut(s)	31, 647
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	2 cut(s)	186, 691
MaeI	CTAG	8 cut(s)	12, 168, 317, 344, 387, 623, 818, 828
MaeII	ACGT	3 cut(s)	306, 462, 466
MaeIII	GTNAC	2 cut(s)	339, 640
MalI	GATC	5 cut(s)	249, 255, 301, 336, 832
MboI	GATC	5 cut(s)	247, 253, 299, 334, 830
MboII	GAAGA	1 cut(s)	509
MflI	RGATCY	2 cut(s)	253, 830
MhlI	GDGCHC	5 cut(s)	166, 288, 632, 652, 658
MluCI	AATT	3 cut(s)	63, 197, 507
MlyI	GAGTC	1 cut(s)	688
MnlI	CCTC	5 cut(s)	168, 383, 601, 681, 846
MreI	CGCCGGCG	1 cut(s)	242
MroI	TCCGGA	1 cut(s)	481
MroNI	GCCGGC	1 cut(s)	242
MroXI	GAANNNNTTC	2 cut(s)	432, 672
MseI	TTAA	3 cut(s)	101, 512, 696
MslI	CAYNNNNRTG	2 cut(s)	159, 416
MspI	CCGG	4 cut(s)	30, 243, 267, 482
MspR9I	CCNGG	2 cut(s)	30, 268
Mva1269I	GAATGC	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	742
NaeI	GCCGGC	1 cut(s)	244
NciI	CCSGG	2 cut(s)	30, 268
NdeI	CATATG	1 cut(s)	359
NdeII	GATC	5 cut(s)	247, 253, 299, 334, 830
NgoMIV	GCCGGC	1 cut(s)	242
NlaIII	CATG	3 cut(s)	40, 662, 755
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	640
NspI	RCATGY	1 cut(s)	755
OliI	CACNNNNGTG	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	321
PciI	ACATGT	1 cut(s)	751
PctI	GAATGC	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	244
PdmI	GAANNNNTTC	2 cut(s)	432, 672
PfeI	GAWTC	1 cut(s)	290
Pfl23II	CGTACG	1 cut(s)	463
PflFI	GACNNNGTC	1 cut(s)	593
PkrI	GCNGC	2 cut(s)	145, 274
PleI	GAGTC	1 cut(s)	687
PpsI	GAGTC	1 cut(s)	687
Ppu21I	YACGTR	2 cut(s)	463, 467
PscI	ACATGT	1 cut(s)	751
Psp124BI	GAGCTC	1 cut(s)	652
PspLI	CGTACG	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	253, 830
PsyI	GACNNNGTC	1 cut(s)	593
RsaI	GTAC	3 cut(s)	461, 465, 620
RsaNI	GTAC	3 cut(s)	460, 464, 619
RseI	CAYNNNNRTG	2 cut(s)	159, 416
SacI	GAGCTC	1 cut(s)	652
SaqAI	TTAA	3 cut(s)	101, 512, 696
SatI	GCNGC	2 cut(s)	144, 273
Sau3AI	GATC	5 cut(s)	247, 253, 299, 334, 830
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	688
ScrFI	CCNGG	2 cut(s)	30, 268
SduI	GDGCHC	5 cut(s)	166, 288, 632, 652, 658
SfaNI	GCATC	2 cut(s)	186, 691
SgrAI	CRCCGGYG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	2 cut(s)	159, 416
SnaBI	TACGTA	1 cut(s)	463
Sse9I	AATT	3 cut(s)	63, 197, 507
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	2 cut(s)	272, 722
SspMI	CTAG	8 cut(s)	12, 168, 317, 344, 387, 623, 818, 828
SstI	GAGCTC	1 cut(s)	652
StuI	AGGCCT	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	28, 266
StyI	CCWWGG	2 cut(s)	208, 381
TaaI	ACNGT	3 cut(s)	350, 444, 634
TaiI	ACGT	3 cut(s)	309, 465, 469
TaqI	TCGA	3 cut(s)	288, 312, 540
TaqII	GACCGA	1 cut(s)	594
TasI	AATT	3 cut(s)	63, 197, 507
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	101, 512, 696
Tru9I	TTAA	3 cut(s)	101, 512, 696
TscAI	CASTG	2 cut(s)	649, 723
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	4 cut(s)	25, 68, 214, 599
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	649, 723
Tth111I	GACNNNGTC	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	350
XagI	CCTNNNNNAGG	1 cut(s)	840
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	755
XcmI	CCANNNNNNNNNTGG	2 cut(s)	379, 715
XmiI	GTMKAC	1 cut(s)	41
XmnI	GAANNNNTTC	2 cut(s)	432, 672
XspI	CTAG	8 cut(s)	12, 168, 317, 344, 387, 623, 818, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.