Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Forward (+)

6495619 .. 6496865

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTATTTCTAGATCCCTTACTGCTCCCGGCTTTCTATACACAAAGAAATCCCACAACCCGTTTCAACAACAGCTTCATTGTCCATCCGTAACATCATCAAACTTATCAATCAAAAGAGCTCATAGTAGGCCAAATCCAATCGCTGCTCACACCCTCCCTCGTACCATAAGCATCTCACAAACTTTCACAAAATTGAAGTCACAAGGGAAAGTGGCATTCATCCCCTACATCACCGCCGGTGATCCAGATCTGTCGACAACCCAGGCGGCGTTGAAGGTGCTCGATTCTTGCGGATCAGACGCAATCGAACTAGGCCTTCCCTACTCCGATGCGTTACTAGACGGTCCTGTCATACGTGCTTCAGCAACACGTTCCTTGGCTAGAGGGACAAACTTCAACAAAGTTATATCCATGTTGAAGGAGGTTGTTCCACAACTGTCTTGCCCTATTGTTCTTTTTTCATACTATAACCCTATCATCAAGCAAGGCATCAAAAGCTTTATGTTCACTATTAGTCAAGCGGGTGTACGCGGGCTTCTGGTCCCGGATATTCCTTTCGAAGAGACCGAAATCTTGAGGAACGAAGCTGCAAAAAATAACGTTGAGTTGGTGCTACTGACAACTCCAGCCACTACGACAGACAGAATGAAAGACATCGTGAAAGCTTCGGAAGGATTTGTGTACCTAGCGAGCACGGCGGGGGTCACCGGAGCTCGTGGGCGTGTGAATGAACAGGTTAAGGGTCTTTTGAAGGAGATTAAGGAGGTCATGCCCAGCAAGGCAGTGGCGGTTGGGTTCGGGCTGTCGAAGCCGGAGCATGTGAAGCAGGTGGCTGAGTGGGGGGCTGATGGCGTTGTTGTTGGTAGTGCCATTGTGAAGGTTCTGGGTGAAGCTAGATCTCCGCTTGGAAGGTTGATAGAACTTGAAACTTTCACCAAGTCTTTGGAGTCTGCTCTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

322

Amino Acids

34.55

Weight (kDa)

9.5

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	63 - 319	1.1e-85	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	820
AasI	GACNNNNNNGTC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	820
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	1 cut(s)	534
AciI	CCGC	8 cut(s)	237, 269, 294, 524, 534, 701, 791, 905
AclI	AACGTT	1 cut(s)	603
AclWI	GGATC	3 cut(s)	9, 239, 304
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	3 cut(s)	166, 531, 686
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	7 cut(s)	68, 199, 277, 400, 421, 754, 929
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	7 cut(s)	76, 122, 501, 590, 668, 716, 896
AluI	AGCT	7 cut(s)	76, 122, 501, 590, 668, 716, 896
Alw21I	GWGCWC	4 cut(s)	124, 285, 698, 718
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	3 cut(s)	9, 239, 304
AoxI	GGCC	2 cut(s)	131, 316
ApeKI	GCWGC	2 cut(s)	146, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AspS9I	GGNCC	2 cut(s)	347, 544
AsuC2I	CCSGG	2 cut(s)	30, 548
AsuHPI	GGTGA	5 cut(s)	226, 254, 700, 902, 928
AsuII	TTCGAA	1 cut(s)	561
AvaII	GGWCC	2 cut(s)	347, 544
BanII	GRGCYC	2 cut(s)	124, 718
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BauI	CACGAG	1 cut(s)	717
Bbv12I	GWGCWC	4 cut(s)	124, 285, 698, 718
BbvI	GCAGC	2 cut(s)	133, 577
BccI	CCATC	2 cut(s)	94, 845
BceAI	ACGGC	1 cut(s)	714
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	2 cut(s)	30, 548
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	6 cut(s)	12, 314, 341, 384, 689, 897
BfuAI	ACCTGC	1 cut(s)	820
BglII	AGATCT	2 cut(s)	250, 899
BisI	GCNGC	3 cut(s)	147, 270, 591
BlsI	GCNGC	3 cut(s)	148, 271, 592
Bme1390I	CCNGG	3 cut(s)	30, 266, 548
Bme18I	GGWCC	2 cut(s)	347, 544
BmgT120I	GGNCC	2 cut(s)	347, 544
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	3 cut(s)	30, 266, 548
BmsI	GCATC	3 cut(s)	183, 322, 501
BpmI	CTGGAG	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	598
BpuMI	CCSGG	2 cut(s)	30, 548
BsaAI	YACGTR	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	264, 378
BsaWI	WCCGGW	1 cut(s)	710
Bse118I	RCCGGY	1 cut(s)	239
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	264, 378
BseGI	GGATG	2 cut(s)	86, 222
BseJI	GATNNNNATC	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	828
BseXI	GCAGC	2 cut(s)	133, 577
BseYI	CCCAGC	1 cut(s)	776
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	133, 318
BsiHKAI	GWGCWC	4 cut(s)	124, 285, 698, 718
BsiSI	CCGG	5 cut(s)	30, 240, 548, 711, 815
BslFI	GGGAC	2 cut(s)	403, 530
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	2 cut(s)	403, 530
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	133, 318
Bso31I	GGTCTC	1 cut(s)	560
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	4 cut(s)	124, 285, 698, 718
Bsp143I	GATC	5 cut(s)	14, 244, 250, 296, 899
BspACI	CCGC	8 cut(s)	237, 269, 294, 524, 534, 701, 791, 905
BspANI	GGCC	2 cut(s)	133, 318
BspCNI	CTCAG	1 cut(s)	829
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	820
BspPI	GGATC	3 cut(s)	9, 239, 304
BspQI	GCTCTTC	1 cut(s)	963
BspT104I	TTCGAA	1 cut(s)	561
BspTNI	GGTCTC	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	264, 378
BssMI	GATC	5 cut(s)	14, 244, 250, 296, 899
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	347, 441
Bst6I	CTCTTC	2 cut(s)	558, 963
BstBAI	YACGTR	1 cut(s)	359
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	536, 694
BstDEI	CTNAG	1 cut(s)	837
BstEII	GGTNACC	1 cut(s)	706
BstF5I	GGATG	2 cut(s)	86, 222
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	5 cut(s)	17, 247, 253, 299, 902
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	5 cut(s)	14, 244, 250, 296, 899
BstMWI	GCNNNNNNNGC	4 cut(s)	498, 698, 811, 826
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	824
BstPI	GGTNACC	1 cut(s)	706
BstSCI	CCNGG	3 cut(s)	28, 264, 546
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	133, 577
BstX2I	RGATCY	3 cut(s)	14, 250, 899
BstXI	CCANNNNNNTGG	1 cut(s)	946
BstYI	RGATCY	3 cut(s)	14, 250, 899
BsuRI	GGCC	2 cut(s)	133, 318
BtsCI	GGATG	2 cut(s)	86, 222
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	1 cut(s)	792
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	2 cut(s)	536, 694
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	347, 544
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	3 cut(s)	165, 530, 685
CviAII	CATG	3 cut(s)	415, 772, 821
CviQI	GTAC	3 cut(s)	165, 530, 685
DdeI	CTNAG	1 cut(s)	837
DpnI	GATC	5 cut(s)	16, 246, 252, 298, 901
DpnII	GATC	5 cut(s)	14, 244, 250, 296, 899
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	2 cut(s)	558, 963
EarI	CTCTTC	2 cut(s)	558, 963
Ecl136II	GAGCTC	2 cut(s)	122, 716
Eco130I	CCWWGG	1 cut(s)	378
Eco147I	AGGCCT	1 cut(s)	318
Eco24I	GRGCYC	2 cut(s)	124, 718
Eco31I	GGTCTC	1 cut(s)	560
Eco47I	GGWCC	2 cut(s)	347, 544
Eco53kI	GAGCTC	2 cut(s)	122, 716
Eco57I	CTGAAG	1 cut(s)	348
Eco91I	GGTNACC	1 cut(s)	706
EcoICRI	GAGCTC	2 cut(s)	122, 716
EcoO65I	GGTNACC	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	2 cut(s)	124, 718
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	3 cut(s)	418, 775, 824
FaqI	GGGAC	2 cut(s)	403, 530
FatI	CATG	3 cut(s)	414, 771, 820
FauI	CCCGC	3 cut(s)	517, 527, 694
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	3 cut(s)	147, 270, 591
FokI	GGATG	2 cut(s)	73, 209
FriOI	GRGCYC	2 cut(s)	124, 718
Fsp4HI	GCNGC	3 cut(s)	147, 270, 591
FspBI	CTAG	6 cut(s)	12, 314, 341, 384, 689, 897
GluI	GCNGC	3 cut(s)	147, 270, 591
GsaI	CCCAGC	1 cut(s)	780
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	133, 318
HapII	CCGG	5 cut(s)	30, 240, 548, 711, 815
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	3 cut(s)	418, 775, 824
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HindIII	AAGCTT	2 cut(s)	499, 666
HinfI	GANTC	2 cut(s)	287, 950
HpaII	CCGG	5 cut(s)	30, 240, 548, 711, 815
HphI	GGTGA	5 cut(s)	226, 254, 700, 902, 928
Hpy166II	GTNNAC	4 cut(s)	258, 510, 530, 685
Hpy188I	TCNGA	3 cut(s)	301, 331, 673
Hpy188III	TCNNGA	4 cut(s)	12, 248, 577, 661
Hpy8I	GTNNAC	4 cut(s)	258, 510, 530, 685
HpyAV	CCTTC	7 cut(s)	271, 329, 415, 668, 748, 874, 906
HpyCH4III	ACNGT	2 cut(s)	347, 441
HpyCH4IV	ACGT	3 cut(s)	358, 373, 603
HpyCH4V	TGCA	1 cut(s)	593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	498, 698, 811, 826
HpyF3I	CTNAG	1 cut(s)	837
HpySE526I	ACGT	3 cut(s)	358, 373, 603
Hsp92II	CATG	3 cut(s)	418, 775, 824
Kzo9I	GATC	5 cut(s)	14, 244, 250, 296, 899
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	3 cut(s)	31, 713, 817
Lsp1109I	GCAGC	2 cut(s)	133, 577
LweI	GCATC	3 cut(s)	183, 322, 501
MaeI	CTAG	6 cut(s)	12, 314, 341, 384, 689, 897
MaeII	ACGT	3 cut(s)	358, 373, 603
MaeIII	GTNAC	4 cut(s)	91, 201, 336, 706
MalI	GATC	5 cut(s)	16, 246, 252, 298, 901
MboI	GATC	5 cut(s)	14, 244, 250, 296, 899
MboII	GAAGA	2 cut(s)	575, 950
MflI	RGATCY	3 cut(s)	14, 250, 899
MhlI	GDGCHC	4 cut(s)	124, 285, 698, 718
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	959
MnlI	CCTC	6 cut(s)	167, 171, 380, 418, 573, 760
MseI	TTAA	2 cut(s)	741, 762
MspI	CCGG	5 cut(s)	30, 240, 548, 711, 815
MspR9I	CCNGG	3 cut(s)	30, 266, 548
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	4 cut(s)	498, 698, 811, 826
NciI	CCSGG	2 cut(s)	30, 548
NdeII	GATC	5 cut(s)	14, 244, 250, 296, 899
NlaIII	CATG	3 cut(s)	418, 775, 824
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	2 cut(s)	201, 706
NspI	RCATGY	1 cut(s)	824
NspV	TTCGAA	1 cut(s)	561
PaqCI	CACCTGC	1 cut(s)	820
PceI	AGGCCT	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	3 cut(s)	148, 271, 592
PleI	GAGTC	1 cut(s)	958
PpsI	GAGTC	1 cut(s)	958
Ppu21I	YACGTR	1 cut(s)	359
Psp124BI	GAGCTC	2 cut(s)	124, 718
Psp1406I	AACGTT	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	2 cut(s)	347, 544
PsuI	RGATCY	3 cut(s)	14, 250, 899
RsaI	GTAC	3 cut(s)	166, 531, 686
RsaNI	GTAC	3 cut(s)	165, 530, 685
SacI	GAGCTC	2 cut(s)	124, 718
SalI	GTCGAC	1 cut(s)	256
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	2 cut(s)	741, 762
SatI	GCNGC	3 cut(s)	147, 270, 591
Sau3AI	GATC	5 cut(s)	14, 244, 250, 296, 899
Sau96I	GGNCC	2 cut(s)	347, 544
SchI	GAGTC	1 cut(s)	959
ScrFI	CCNGG	3 cut(s)	30, 266, 548
SduI	GDGCHC	4 cut(s)	124, 285, 698, 718
SfaNI	GCATC	3 cut(s)	183, 322, 501
SfuI	TTCGAA	1 cut(s)	561
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	2 cut(s)	347, 544
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	1 cut(s)	194
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	8 cut(s)	237, 269, 294, 524, 534, 701, 791, 905
SspMI	CTAG	6 cut(s)	12, 314, 341, 384, 689, 897
SstI	GAGCTC	2 cut(s)	124, 718
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	3 cut(s)	28, 264, 546
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	347, 441
TaiI	ACGT	3 cut(s)	361, 376, 606
TaqI	TCGA	5 cut(s)	257, 285, 309, 561, 809
TaqII	GACCGA	1 cut(s)	584
TasI	AATT	1 cut(s)	194
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	741, 762
Tru9I	TTAA	2 cut(s)	741, 762
TscAI	CASTG	1 cut(s)	792
TseFI	GTSAC	2 cut(s)	201, 706
TseI	GCWGC	2 cut(s)	146, 590
Tsp45I	GTSAC	2 cut(s)	201, 706
TspDTI	ATGAA	5 cut(s)	68, 211, 453, 665, 747
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	792
VpaK11BI	GGWCC	2 cut(s)	347, 544
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	1 cut(s)	824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	784
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	6 cut(s)	12, 314, 341, 384, 689, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.