Rh3DG117800

Belongs to the TrpA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
9929499 .. 9930931
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG117800.1

Sequence Viewer

Length: 975 bp
ATGGATATTCCTAGTTATCTTAAACTTACTACTGCTCCCGGCTTTATACATACAAAGAAACCCCAAGACCCATTTCAACAACAGCTTCATTCTCCATCTCAAACATCATTAACCTTATCAATCAAAAGAGTTCTTAGGCCAAATCCAAAGGCTGCTCTCACCCACCCTTGTGCCCCTAGCATAAGCATCTCACAAACTTTCACAAAATTGAAGTCACAAGGGAAAGTGGCATTCATCCCCTACATCACCGCCGGCGATCCAGATCTCTCAACAACCGGGGCGGCATTGAAGTTGCTCGATTCTTGTGGATCAGACGTAATCGAACTAGGCCTTCCCTACTCCGATCCGTTACTAGACGGTCCTGTCATATGTGCTTCAGCCACCCGTTCCTTGGCTAGAGGGACAAACTTCAACAAAGTCATCTCAATGTTGAAGGAAGTTGTTCCACAACTGTCTTGCCCCATTGTTCTTTTTTCATACTATAACCCGATCATCAATCATGGCATCAAAAACTATATGTTCACCATTAGTCAAGCAGGTGTACGTGGGCTTGTGGTTCCGGATGTTCCTTTTGAAGAGACACAAATCTTAAGGAAGGAAGCTGCGAAAAATAACATCGAGTTGGTGCTACTGACCACTCCAGCTACTACAACAGACCGAATGAAAGACATCGTCAAAGCTTCTGAGGGATTTGTGTACCTAGTGAGCACGGTGGGGGTCACCGGAGCTCGTGCTCGTGTGAACGAACAAGTTCCGAGTCTTTTGAGGGAGATTAAGGATGCCACCAGCAAGGCAGTCGCGGTTGGGTTTGGGCTGTCTAAGCCTGAACATGTGAAACAGGTGGCTGAGTGGGGGGCTGATGGCGTTATTGTTGGTAGCGCCATTGTGAAGGCTCTAGGTGAAGCTAGATCTCCTCTTGAAGGGTTGAGAGAGCTTGAAACTGTCACCAAGTCTTTCAAGTCTGCTCTCCATTGA

Protein Analysis

324

Amino Acids

34.86

Weight (kDa)

9.14

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_syntA PF00290 67 - 322 1.2e-89 Tryptophan synthase alpha chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 527
AasI GACNNNNNNGTC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 527
AccII CGCG 1 cut(s) 800
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 3 cut(s) 249, 281, 800
AclWI GGATC 3 cut(s) 251, 316, 338
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 2 cut(s) 543, 698
AfiI CCNNNNNNNGG 2 cut(s) 391, 920
AflII CTTAAG 1 cut(s) 589
AflIII ACRYGT 1 cut(s) 829
AgsI TTSAA 9 cut(s) 77, 211, 289, 412, 433, 575, 920, 938, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AleI CACNNNNGTG 1 cut(s) 168
AluBI AGCT 7 cut(s) 85, 602, 644, 680, 728, 905, 934
AluI AGCT 7 cut(s) 85, 602, 644, 680, 728, 905, 934
Alw21I GWGCWC 3 cut(s) 710, 730, 736
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 3 cut(s) 251, 316, 338
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 2 cut(s) 137, 328
ApeKI GCWGC 2 cut(s) 152, 602
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
Asp700I GAANNNNTTC 2 cut(s) 441, 750
AspLEI GCGC 1 cut(s) 881
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 2 cut(s) 39, 277
AsuHPI GGTGA 6 cut(s) 151, 238, 514, 712, 911, 937
AvaII GGWCC 1 cut(s) 359
BaeGI GKGCMC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 730
BauI CACGAG 2 cut(s) 729, 735
Bbv12I GWGCWC 3 cut(s) 710, 730, 736
BbvI GCAGC 2 cut(s) 139, 589
BccI CCATC 2 cut(s) 103, 854
BcgI CGANNNNNNTGC 2 cut(s) 778, 812
BcnI CCSGG 2 cut(s) 39, 277
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 8 cut(s) 12, 177, 326, 353, 396, 701, 896, 906
BfoI RGCGCY 1 cut(s) 882
BfrI CTTAAG 1 cut(s) 589
BfuAI ACCTGC 1 cut(s) 527
BglII AGATCT 2 cut(s) 262, 908
BisI GCNGC 3 cut(s) 153, 282, 603
BlsI GCNGC 3 cut(s) 154, 283, 604
Bme1390I CCNGG 2 cut(s) 39, 277
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 2 cut(s) 39, 277
BmsI GCATC 3 cut(s) 195, 513, 769
BpmI CTGGAG 1 cut(s) 624
BpuMI CCSGG 2 cut(s) 39, 277
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 276, 390
BsaWI WCCGGW 2 cut(s) 559, 722
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 920
Bse118I RCCGGY 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 261
BseAI TCCGGA 1 cut(s) 559
BseDI CCNNGG 2 cut(s) 276, 390
BseGI GGATG 3 cut(s) 234, 568, 784
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 391, 920
BseMII CTCAG 2 cut(s) 675, 837
BseRI GAGGAG 1 cut(s) 903
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 2 cut(s) 139, 589
Bsh1236I CGCG 1 cut(s) 800
BshFI GGCC 2 cut(s) 139, 330
BsiHKAI GWGCWC 3 cut(s) 710, 730, 736
BsiSI CCGG 5 cut(s) 39, 252, 276, 560, 723
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 2 cut(s) 391, 920
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 1 cut(s) 415
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 2 cut(s) 139, 330
Bsp1286I GDGCHC 4 cut(s) 175, 710, 730, 736
Bsp13I TCCGGA 1 cut(s) 559
Bsp143I GATC 6 cut(s) 256, 262, 308, 343, 489, 908
BspACI CCGC 3 cut(s) 249, 281, 800
BspANI GGCC 2 cut(s) 139, 330
BspCNI CTCAG 2 cut(s) 676, 838
BspEI TCCGGA 1 cut(s) 559
BspFNI CGCG 1 cut(s) 800
BspLI GGNNCC 1 cut(s) 558
BspMI ACCTGC 1 cut(s) 527
BspPI GGATC 3 cut(s) 251, 316, 338
BspTI CTTAAG 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 276, 390
BssMI GATC 6 cut(s) 256, 262, 308, 343, 489, 908
BssSI CACGAG 2 cut(s) 729, 735
BssT1I CCWWGG 1 cut(s) 390
Bst2BI CACGAG 2 cut(s) 729, 735
Bst4CI ACNGT 4 cut(s) 359, 453, 712, 943
Bst6I CTCTTC 1 cut(s) 570
BstAFI CTTAAG 1 cut(s) 589
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 4 cut(s) 134, 684, 819, 846
BstEII GGTNACC 1 cut(s) 718
BstENI CCTNNNNNAGG 1 cut(s) 918
BstF5I GGATG 3 cut(s) 234, 568, 784
BstFNI CGCG 1 cut(s) 800
BstH2I RGCGCY 1 cut(s) 882
BstHHI GCGC 1 cut(s) 881
BstKTI GATC 6 cut(s) 259, 265, 311, 346, 492, 911
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 6 cut(s) 256, 262, 308, 343, 489, 908
BstMWI GCNNNNNNNGC 1 cut(s) 820
BstNSI RCATGY 1 cut(s) 833
BstPI GGTNACC 1 cut(s) 718
BstSCI CCNGG 2 cut(s) 37, 275
BstSLI GKGCMC 1 cut(s) 175
BstUI CGCG 1 cut(s) 800
BstV1I GCAGC 2 cut(s) 139, 589
BstX2I RGATCY 2 cut(s) 262, 908
BstYI RGATCY 2 cut(s) 262, 908
BsuRI GGCC 2 cut(s) 139, 330
BtsCI GGATG 3 cut(s) 234, 568, 784
BveI ACCTGC 1 cut(s) 527
Cac8I GCNNGC 1 cut(s) 253
CfoI GCGC 1 cut(s) 881
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 359
Csp6I GTAC 2 cut(s) 542, 697
CviAII CATG 2 cut(s) 500, 830
CviQI GTAC 2 cut(s) 542, 697
DdeI CTNAG 4 cut(s) 134, 684, 819, 846
DpnI GATC 6 cut(s) 258, 264, 310, 345, 491, 910
DpnII GATC 6 cut(s) 256, 262, 308, 343, 489, 908
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 728
Eco130I CCWWGG 1 cut(s) 390
Eco147I AGGCCT 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 730
Eco47I GGWCC 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 360
Eco91I GGTNACC 1 cut(s) 718
EcoICRI GAGCTC 1 cut(s) 728
EcoNI CCTNNNNNAGG 1 cut(s) 918
EcoO65I GGTNACC 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 730
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 2 cut(s) 503, 833
FaqI GGGAC 1 cut(s) 415
FatI CATG 2 cut(s) 499, 829
FauNDI CATATG 1 cut(s) 368
Fnu4HI GCNGC 3 cut(s) 153, 282, 603
FokI GGATG 3 cut(s) 221, 575, 791
FriOI GRGCYC 1 cut(s) 730
Fsp4HI GCNGC 3 cut(s) 153, 282, 603
FspBI CTAG 8 cut(s) 12, 177, 326, 353, 396, 701, 896, 906
GlaI GCGC 1 cut(s) 880
GluI GCNGC 3 cut(s) 153, 282, 603
GsuI CTGGAG 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 882
HaeIII GGCC 2 cut(s) 139, 330
HapII CCGG 5 cut(s) 39, 252, 276, 560, 723
HhaI GCGC 1 cut(s) 881
Hin1II CATG 2 cut(s) 503, 833
Hin6I GCGC 1 cut(s) 879
HinP1I GCGC 1 cut(s) 879
HindIII AAGCTT 1 cut(s) 678
HinfI GANTC 2 cut(s) 299, 757
HpaII CCGG 5 cut(s) 39, 252, 276, 560, 723
HphI GGTGA 6 cut(s) 151, 238, 514, 712, 911, 937
Hpy166II GTNNAC 4 cut(s) 522, 542, 697, 742
Hpy188I TCNGA 4 cut(s) 313, 343, 685, 756
Hpy188III TCNNGA 3 cut(s) 260, 560, 917
Hpy8I GTNNAC 4 cut(s) 522, 542, 697, 742
HpyAV CCTTC 5 cut(s) 341, 427, 589, 883, 914
HpyCH4III ACNGT 4 cut(s) 359, 453, 712, 943
HpyCH4IV ACGT 2 cut(s) 315, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 820
HpyF3I CTNAG 4 cut(s) 134, 684, 819, 846
HpySE526I ACGT 2 cut(s) 315, 544
Hsp92II CATG 2 cut(s) 503, 833
HspAI GCGC 1 cut(s) 879
Kpn2I TCCGGA 1 cut(s) 559
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 6 cut(s) 256, 262, 308, 343, 489, 908
LmnI GCTCC 2 cut(s) 40, 725
Lsp1109I GCAGC 2 cut(s) 139, 589
LweI GCATC 3 cut(s) 195, 513, 769
MaeI CTAG 8 cut(s) 12, 177, 326, 353, 396, 701, 896, 906
MaeII ACGT 2 cut(s) 315, 544
MaeIII GTNAC 4 cut(s) 213, 348, 718, 943
MalI GATC 6 cut(s) 258, 264, 310, 345, 491, 910
MboI GATC 6 cut(s) 256, 262, 308, 343, 489, 908
MboII GAAGA 1 cut(s) 587
MflI RGATCY 2 cut(s) 262, 908
MhlI GDGCHC 4 cut(s) 175, 710, 730, 736
MluCI AATT 1 cut(s) 206
MlyI GAGTC 1 cut(s) 766
MnlI CCTC 4 cut(s) 392, 679, 759, 924
MreI CGCCGGCG 1 cut(s) 251
MroI TCCGGA 1 cut(s) 559
MroNI GCCGGC 1 cut(s) 251
MroXI GAANNNNTTC 2 cut(s) 441, 750
MseI TTAA 4 cut(s) 21, 110, 590, 774
MslI CAYNNNNRTG 2 cut(s) 168, 425
MspCI CTTAAG 1 cut(s) 589
MspI CCGG 5 cut(s) 39, 252, 276, 560, 723
MspR9I CCNGG 2 cut(s) 39, 277
Mva1269I GAATGC 1 cut(s) 230
MvnI CGCG 1 cut(s) 800
MwoI GCNNNNNNNGC 1 cut(s) 820
NaeI GCCGGC 1 cut(s) 253
NciI CCSGG 2 cut(s) 39, 277
NdeI CATATG 1 cut(s) 368
NdeII GATC 6 cut(s) 256, 262, 308, 343, 489, 908
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 503, 833
NlaIV GGNNCC 1 cut(s) 558
NmuCI GTSAC 3 cut(s) 213, 718, 943
NspI RCATGY 1 cut(s) 833
OliI CACNNNNGTG 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 527
PceI AGGCCT 1 cut(s) 330
PciI ACATGT 1 cut(s) 829
PctI GAATGC 1 cut(s) 230
PdiI GCCGGC 1 cut(s) 253
PdmI GAANNNNTTC 2 cut(s) 441, 750
PfeI GAWTC 1 cut(s) 299
PflFI GACNNNGTC 1 cut(s) 671
PkrI GCNGC 3 cut(s) 154, 283, 604
PleI GAGTC 1 cut(s) 765
PpsI GAGTC 1 cut(s) 765
Ppu21I YACGTR 1 cut(s) 545
PscI ACATGT 1 cut(s) 829
Psp124BI GAGCTC 1 cut(s) 730
PspEI GGTNACC 1 cut(s) 718
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 1 cut(s) 359
PsuI RGATCY 2 cut(s) 262, 908
PsyI GACNNNGTC 1 cut(s) 671
RsaI GTAC 2 cut(s) 543, 698
RsaNI GTAC 2 cut(s) 542, 697
RseI CAYNNNNRTG 2 cut(s) 168, 425
SacI GAGCTC 1 cut(s) 730
SaqAI TTAA 4 cut(s) 21, 110, 590, 774
SatI GCNGC 3 cut(s) 153, 282, 603
Sau3AI GATC 6 cut(s) 256, 262, 308, 343, 489, 908
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 1 cut(s) 766
ScrFI CCNGG 2 cut(s) 39, 277
SduI GDGCHC 4 cut(s) 175, 710, 730, 736
SfaNI GCATC 3 cut(s) 195, 513, 769
SgrAI CRCCGGYG 1 cut(s) 251
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 2 cut(s) 168, 425
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 1 cut(s) 206
SseBI AGGCCT 1 cut(s) 330
SsiI CCGC 3 cut(s) 249, 281, 800
SspMI CTAG 8 cut(s) 12, 177, 326, 353, 396, 701, 896, 906
SstI GAGCTC 1 cut(s) 730
StuI AGGCCT 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 37, 275
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 4 cut(s) 359, 453, 712, 943
TaiI ACGT 2 cut(s) 318, 547
TaqI TCGA 3 cut(s) 297, 321, 618
TaqII GACCGA 1 cut(s) 672
TasI AATT 1 cut(s) 206
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 4 cut(s) 21, 110, 590, 774
Tru9I TTAA 4 cut(s) 21, 110, 590, 774
TseFI GTSAC 3 cut(s) 213, 718, 943
TseI GCWGC 2 cut(s) 152, 602
Tsp45I GTSAC 3 cut(s) 213, 718, 943
TspDTI ATGAA 4 cut(s) 77, 223, 465, 677
TspGWI ACGGA 1 cut(s) 336
Tth111I GACNNNGTC 1 cut(s) 671
Vha464I CTTAAG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 359
XagI CCTNNNNNAGG 1 cut(s) 918
XceI RCATGY 1 cut(s) 833
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmnI GAANNNNTTC 2 cut(s) 441, 750
XspI CTAG 8 cut(s) 12, 177, 326, 353, 396, 701, 896, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.