Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Reverse (-)

15680854 .. 15681795

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G144300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTGCTTCTCTGAAATCCACTGCTACTGGCTTTCTTCAATTTAAGAAACCTCAAAACCCATTTCTTCTTCTATCCCAAGCATCAACCGTTCCAGTCAAGAAAAGTCCTCTAACACCAATGGCTGCTCTCACCTTGACCGCTACCAACAATCTCTCACAAACTTTCACAAAATTGAAGAACCAACGCAAAGTAGCATTTATCCCTTACATCACTGCCGGTGATCCTCACCTTTCAACCACGGCGCAAGCGCTGAAGGTGCTCAATTCTAGTGGGGCGGACGTGATCGAGTTAGGTGTGCCACACTCTGATCCAATACTAGACGGTCCAGTTATTCAGGCTTCAGCCACTCGTTCCTTAGCTAGAGGGACCAATTTCAATTCTATTATGTCAATGTTAAAGGACGTAATACCACAATTGTCTTGTCCAATCGTTCTATTTTCGTACTATAACCCAATTATAAAGCATGGTATTGAAAACTTCATGTCCACAATTAGCGACGTTGGGGTACATGGTCTTGTGGTTCCAGATGCTCCATTTGAAGAGACAAAAAGCTTGAGAAAGGAGGCTGTGAAGAATAACGTTGAGTTGGCATTACTAACTACACCCACTACGCCAATAGATCAAATGAAGAAGATAGTTGAAGCTTCAGAAGGATTTGTATACCTTGTGAGCACTGTGGGAGTTACCGGTGCCCGTGAATCGGTGAACGAACAAATTCCGAGGCTTTTAAGGGAAATTAGAGAGGCAACAACCAAGCCTGTGGCAGTTGGTTTTGGGCTATCAAAGCCTGAACATGTGAAACAAGTAGCAGAGTGGGGAGCTGATGGTGTTATTGTTGGTAGTGCCATTGTGAAGGTGTTGGGGGAAGCCAAGTCTCCTAAAGAAGGGTTGAAAGCACTTGAAACTTTCACCAAGTCTTTCACATCTGTCCTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

314

Amino Acids

33.49

Weight (kDa)

9.26

Isoelectric Point (pI)

24.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	2 cut(s)	141, 278
AclI	AACGTT	1 cut(s)	582
AclWI	GGATC	2 cut(s)	218, 305
AcsI	RAATTY	1 cut(s)	717
AcuI	CTGAAG	3 cut(s)	275, 327, 633
AfaI	GTAC	2 cut(s)	446, 510
AfeI	AGCGCT	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	703, 887
AflIII	ACRYGT	1 cut(s)	796
AgeI	ACCGGT	1 cut(s)	689
AgsI	TTSAA	9 cut(s)	41, 178, 237, 379, 476, 542, 644, 895, 905
AjiI	CACGTC	1 cut(s)	283
AluBI	AGCT	4 cut(s)	362, 555, 647, 824
AluI	AGCT	4 cut(s)	362, 555, 647, 824
Alw21I	GWGCWC	2 cut(s)	264, 677
Alw26I	GTCTC	2 cut(s)	539, 882
AlwI	GGATC	2 cut(s)	218, 305
Aor51HI	AGCGCT	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	5, 125
ApoI	RAATTY	1 cut(s)	717
AsiGI	ACCGGT	1 cut(s)	689
Asp700I	GAANNNNTTC	1 cut(s)	717
AspLEI	GCGC	2 cut(s)	247, 253
AspS9I	GGNCC	2 cut(s)	326, 369
AsuHPI	GGTGA	5 cut(s)	124, 221, 233, 718, 904
AvaII	GGWCC	2 cut(s)	326, 369
BaeGI	GKGCMC	1 cut(s)	697
BanI	GGYRCC	1 cut(s)	692
Bbv12I	GWGCWC	2 cut(s)	264, 677
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	821
BceAI	ACGGC	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	539, 882
BfaI	CTAG	3 cut(s)	270, 320, 363
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	2 cut(s)	6, 126
BlsI	GCNGC	2 cut(s)	7, 127
Bme18I	GGWCC	2 cut(s)	326, 369
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	326, 369
BmiI	GGNNCC	3 cut(s)	370, 525, 694
BmsI	GCATC	2 cut(s)	92, 520
Bpu10I	CCTNAGC	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	577
BsaJI	CCNNGG	3 cut(s)	240, 722, 934
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	2 cut(s)	703, 887
Bse118I	RCCGGY	2 cut(s)	218, 689
Bse1I	ACTGG	3 cut(s)	34, 95, 329
BseDI	CCNNGG	3 cut(s)	240, 722, 934
BseLI	CCNNNNNNNGG	2 cut(s)	703, 887
BseNI	ACTGG	3 cut(s)	34, 95, 329
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	692
BshTI	ACCGGT	1 cut(s)	689
BsiHKAI	GWGCWC	2 cut(s)	264, 677
BsiSI	CCGG	2 cut(s)	219, 690
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	703, 887
BsmAI	GTCTC	2 cut(s)	539, 882
BsmFI	GGGAC	1 cut(s)	382
Bsp1286I	GDGCHC	3 cut(s)	264, 677, 697
Bsp143I	GATC	4 cut(s)	223, 285, 310, 622
BspACI	CCGC	2 cut(s)	141, 278
BspLI	GGNNCC	3 cut(s)	370, 525, 694
BspPI	GGATC	2 cut(s)	218, 305
BspT107I	GGYRCC	1 cut(s)	692
BsrFI	RCCGGY	2 cut(s)	218, 689
BsrI	ACTGG	3 cut(s)	34, 95, 329
BssAI	RCCGGY	2 cut(s)	218, 689
BssECI	CCNNGG	3 cut(s)	240, 722, 934
BssMI	GATC	4 cut(s)	223, 285, 310, 622
BssNAI	GTATAC	1 cut(s)	664
BssT1I	CCWWGG	1 cut(s)	934
Bst1107I	GTATAC	1 cut(s)	664
Bst4CI	ACNGT	3 cut(s)	91, 326, 679
Bst6I	CTCTTC	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	358
BstDSI	CCRYGG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	885
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	247, 253
BstKTI	GATC	4 cut(s)	226, 288, 313, 625
BstMAI	GTCTC	2 cut(s)	539, 882
BstMBI	GATC	4 cut(s)	223, 285, 310, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 787
BstNSI	RCATGY	1 cut(s)	800
BstSLI	GKGCMC	1 cut(s)	697
BstV1I	GCAGC	1 cut(s)	112
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstZ17I	GTATAC	1 cut(s)	664
BtgI	CCRYGG	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	283
BtsI	GCAGTG	2 cut(s)	21, 213
BtsIMutI	CAGTG	3 cut(s)	21, 213, 675
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	2 cut(s)	247, 253
Cfr10I	RCCGGY	2 cut(s)	218, 689
Cfr13I	GGNCC	2 cut(s)	326, 369
Csp6I	GTAC	2 cut(s)	445, 509
CspAI	ACCGGT	1 cut(s)	689
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	4 cut(s)	467, 484, 512, 797
CviQI	GTAC	2 cut(s)	445, 509
DdeI	CTNAG	1 cut(s)	358
DpnI	GATC	4 cut(s)	225, 287, 312, 624
DpnII	GATC	4 cut(s)	223, 285, 310, 622
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
EciI	GGCGGA	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	934
Eco47I	GGWCC	2 cut(s)	326, 369
Eco47III	AGCGCT	1 cut(s)	252
Eco57I	CTGAAG	3 cut(s)	275, 327, 633
EcoNI	CCTNNNNNAGG	1 cut(s)	885
EcoT14I	CCWWGG	1 cut(s)	934
ErhI	CCWWGG	1 cut(s)	934
FaeI	CATG	4 cut(s)	470, 487, 515, 800
FaiI	YATR	8 cut(s)	389, 450, 461, 468, 485, 513, 664, 798
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	4 cut(s)	466, 483, 511, 796
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	6, 126
Fsp4HI	GCNGC	2 cut(s)	6, 126
FspBI	CTAG	3 cut(s)	270, 320, 363
GlaI	GCGC	2 cut(s)	246, 252
GluI	GCNGC	2 cut(s)	6, 126
HaeII	RGCGCY	1 cut(s)	254
HapII	CCGG	2 cut(s)	219, 690
HhaI	GCGC	2 cut(s)	247, 253
Hin1II	CATG	4 cut(s)	470, 487, 515, 800
Hin6I	GCGC	2 cut(s)	245, 251
HinP1I	GCGC	2 cut(s)	245, 251
HindIII	AAGCTT	2 cut(s)	553, 645
HinfI	GANTC	1 cut(s)	701
HpaII	CCGG	2 cut(s)	219, 690
HphI	GGTGA	5 cut(s)	124, 221, 233, 718, 904
Hpy166II	GTNNAC	3 cut(s)	489, 664, 709
Hpy188I	TCNGA	4 cut(s)	15, 310, 652, 723
Hpy188III	TCNNGA	2 cut(s)	100, 527
Hpy8I	GTNNAC	3 cut(s)	489, 664, 709
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	4 cut(s)	250, 647, 850, 881
HpyCH4III	ACNGT	3 cut(s)	91, 326, 679
HpyCH4IV	ACGT	4 cut(s)	282, 405, 501, 582
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 787
HpyF3I	CTNAG	1 cut(s)	358
HpySE526I	ACGT	4 cut(s)	282, 405, 501, 582
Hsp92II	CATG	4 cut(s)	470, 487, 515, 800
HspAI	GCGC	2 cut(s)	245, 251
Kzo9I	GATC	4 cut(s)	223, 285, 310, 622
LmnI	GCTCC	2 cut(s)	538, 821
LpnPI	CCDG	9 cut(s)	15, 108, 232, 323, 342, 540, 703, 774, 804
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	2 cut(s)	92, 520
MaeI	CTAG	3 cut(s)	270, 320, 363
MaeII	ACGT	4 cut(s)	282, 405, 501, 582
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	4 cut(s)	225, 287, 312, 624
MboI	GATC	4 cut(s)	223, 285, 310, 622
MboII	GAAGA	8 cut(s)	29, 59, 62, 190, 554, 586, 643, 646
MfeI	CAATTG	1 cut(s)	416
MhlI	GDGCHC	3 cut(s)	264, 677, 697
MnlI	CCTC	7 cut(s)	63, 120, 237, 359, 559, 717, 739
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	4 cut(s)	45, 398, 731, 940
MspI	CCGG	2 cut(s)	219, 690
MunI	CAATTG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	259, 787
NdeII	GATC	4 cut(s)	223, 285, 310, 622
NlaIII	CATG	4 cut(s)	470, 487, 515, 800
NlaIV	GGNNCC	3 cut(s)	370, 525, 694
NspI	RCATGY	1 cut(s)	800
PciI	ACATGT	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	701
PinAI	ACCGGT	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	7, 127
PscI	ACATGT	1 cut(s)	796
PsiI	TTATAA	1 cut(s)	461
Psp1406I	AACGTT	1 cut(s)	582
PspN4I	GGNNCC	3 cut(s)	370, 525, 694
PspPI	GGNCC	2 cut(s)	326, 369
RsaI	GTAC	2 cut(s)	446, 510
RsaNI	GTAC	2 cut(s)	445, 509
SaqAI	TTAA	4 cut(s)	45, 398, 731, 940
SatI	GCNGC	2 cut(s)	6, 126
Sau3AI	GATC	4 cut(s)	223, 285, 310, 622
Sau96I	GGNCC	2 cut(s)	326, 369
SduI	GDGCHC	3 cut(s)	264, 677, 697
SfaNI	GCATC	2 cut(s)	92, 520
SinI	GGWCC	2 cut(s)	326, 369
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
SsiI	CCGC	2 cut(s)	141, 278
SspMI	CTAG	3 cut(s)	270, 320, 363
StyI	CCWWGG	1 cut(s)	934
TaaI	ACNGT	3 cut(s)	91, 326, 679
TaiI	ACGT	4 cut(s)	285, 408, 504, 585
TaqI	TCGA	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	701
Tru1I	TTAA	4 cut(s)	45, 398, 731, 940
Tru9I	TTAA	4 cut(s)	45, 398, 731, 940
TscAI	CASTG	3 cut(s)	28, 220, 682
TseI	GCWGC	2 cut(s)	5, 125
TspDTI	ATGAA	2 cut(s)	472, 644
TspRI	CASTG	3 cut(s)	28, 220, 682
VpaK11BI	GGWCC	2 cut(s)	326, 369
XagI	CCTNNNNNAGG	1 cut(s)	885
XapI	RAATTY	1 cut(s)	717
XceI	RCATGY	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	3 cut(s)	270, 320, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.