Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00925

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Forward (+)

98928 .. 100113

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCTCTTCTTATTTCTCTAACGTCCACTACCAGCTTTTTTCAACTCATTACAAAGAACCCTCAAATCCCATATTCTCATCTTCATTCTCCTTTCCAAACAACAACAAACTTTTCAATCAAGAAACTACTTGGGGCAAATCCAATGGCTGCTCTCACCACCACTACCCCTAACAGAATCTCAGAAACTTTCACAAAATTGAAGTCACAACGGAAAGTGGCATTTATCCCCTACATCACCGCTGGAGATCCTGATCTCTCGACTACCGCAGAAGCATTGAAGGTGCTCAATTCTCGTGGATCGGACATAATAGAACTAGGGGTGCCCTACTCCTATCCATTACTAGACGGTCCCGTCATACGTGATTCAGCTACTCGTTCCTTGGCTAGAGGGACAAACTTGAACAAGGTTATCTCAATGTTGAAGGAGGTTATTCCACAGCTGTCTTGCCCTATCACTCTGATGTCCTACTCTAACCCTATTATCAATCATGGCATCGTAAACTTCATGTTGAACATTAGTGAAGCAGGCGTAAGTGGGCTTGTGAGATCGCATGAAAGACATTGTCCAAGCTTCGGAGGGATTTGTGTACCTGGTGAGCACGGTGGGGGTTACGTTACTGGAGCTCGTGAGCCTGTGAACGAACAAGTTCCAAGTCTTTTGAGTGAGATTAAAAAGTCGACAAACAAGGCGGTGGCGGTTGGTTTCAGGTTGTCGAAGCCTAAACATGTGAAGCAGGTGGCGGAGTGGGGGGCTGATGGCGTTATTGTTGGTAGTGCCATTGTGAAGGTATTTGGTGAAGCTAGATCTCCATTGCAAGGGTTGAGAGAACTTAAAACTTTCACCAAATCTTTCAAGTTGGCTCTAATTGATGATGTATATGTCGTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

297

Amino Acids

32.12

Weight (kDa)

9.54

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	64 - 182	5.8e-38	Tryptophan synthase alpha chain
Trp_syntA	PF00290	206 - 286	1.6e-16	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	727
AasI	GACNNNNNNGTC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	727
AccB1I	GGYRCC	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	680
AciI	CCGC	5 cut(s)	240, 267, 692, 698, 743
AclWI	GGATC	2 cut(s)	242, 307
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	2 cut(s)	575, 818
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	8 cut(s)	44, 117, 202, 280, 403, 424, 514, 856
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	6 cut(s)	36, 371, 442, 573, 626, 803
AluI	AGCT	6 cut(s)	36, 371, 442, 573, 626, 803
Alw21I	GWGCWC	3 cut(s)	288, 603, 628
AlwI	GGATC	2 cut(s)	242, 307
ApeKI	GCWGC	1 cut(s)	149
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	5 cut(s)	148, 229, 608, 809, 835
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	628
BauI	CACGAG	2 cut(s)	294, 627
Bbv12I	GWGCWC	3 cut(s)	288, 603, 628
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	752
BciT130I	CCWGG	1 cut(s)	594
BfaI	CTAG	4 cut(s)	317, 344, 387, 804
BfuAI	ACCTGC	1 cut(s)	727
BglII	AGATCT	1 cut(s)	806
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	324, 352
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	1 cut(s)	504
BpmI	CTGGAG	2 cut(s)	264, 642
BsaAI	YACGTR	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	2 cut(s)	575, 818
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	812
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	381
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	575, 818
BseMI	GCAATG	1 cut(s)	812
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	625
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	322
BsiHKAI	GWGCWC	3 cut(s)	288, 603, 628
BslFI	GGGAC	2 cut(s)	336, 406
BslI	CCNNNNNNNGG	2 cut(s)	575, 818
BsmFI	GGGAC	2 cut(s)	336, 406
Bsp1286I	GDGCHC	4 cut(s)	288, 327, 603, 628
Bsp143I	GATC	5 cut(s)	247, 253, 299, 548, 806
BspACI	CCGC	5 cut(s)	240, 267, 692, 698, 743
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	324, 352
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	2 cut(s)	242, 307
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	812
BsrI	ACTGG	1 cut(s)	625
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	5 cut(s)	247, 253, 299, 548, 806
BssSI	CACGAG	2 cut(s)	294, 627
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	2 cut(s)	294, 627
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	350, 605
Bst6I	CTCTTC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	1 cut(s)	181
BstKTI	GATC	5 cut(s)	250, 256, 302, 551, 809
BstMBI	GATC	5 cut(s)	247, 253, 299, 548, 806
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	1 cut(s)	592
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	247, 806
BstYI	RGATCY	2 cut(s)	247, 806
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	350
CsiI	ACCWGGT	1 cut(s)	592
Csp6I	GTAC	1 cut(s)	590
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	4 cut(s)	491, 508, 554, 728
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	5 cut(s)	249, 255, 301, 550, 808
DpnII	GATC	5 cut(s)	247, 253, 299, 548, 806
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	758
Ecl136II	GAGCTC	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	4 cut(s)	494, 511, 557, 731
FaiI	YATR	9 cut(s)	73, 308, 359, 492, 509, 555, 729, 880, 882
FaqI	GGGAC	2 cut(s)	336, 406
FatI	CATG	4 cut(s)	490, 507, 553, 727
FblI	GTMKAC	1 cut(s)	680
Fnu4HI	GCNGC	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	4 cut(s)	317, 344, 387, 804
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	2 cut(s)	264, 642
Hin1II	CATG	4 cut(s)	494, 511, 557, 731
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	2 cut(s)	177, 365
HphI	GGTGA	5 cut(s)	148, 229, 608, 809, 835
Hpy166II	GTNNAC	5 cut(s)	27, 502, 590, 640, 681
Hpy188I	TCNGA	4 cut(s)	184, 304, 462, 578
Hpy188III	TCNNGA	4 cut(s)	121, 251, 259, 629
Hpy8I	GTNNAC	5 cut(s)	27, 502, 590, 640, 681
Hpy99I	CGWCG	1 cut(s)	890
HpyAV	CCTTC	3 cut(s)	274, 418, 781
HpyCH4III	ACNGT	2 cut(s)	350, 605
HpyCH4IV	ACGT	3 cut(s)	23, 361, 615
HpyCH4V	TGCA	1 cut(s)	817
HpyF3I	CTNAG	1 cut(s)	181
HpySE526I	ACGT	3 cut(s)	23, 361, 615
Hsp92II	CATG	4 cut(s)	494, 511, 557, 731
Kzo9I	GATC	5 cut(s)	247, 253, 299, 548, 806
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	504
MabI	ACCWGGT	1 cut(s)	592
MaeI	CTAG	4 cut(s)	317, 344, 387, 804
MaeII	ACGT	3 cut(s)	23, 361, 615
MaeIII	GTNAC	3 cut(s)	204, 611, 616
MalI	GATC	5 cut(s)	249, 255, 301, 550, 808
MboI	GATC	5 cut(s)	247, 253, 299, 548, 806
MboII	GAAGA	1 cut(s)	74
MflI	RGATCY	2 cut(s)	247, 806
MhlI	GDGCHC	4 cut(s)	288, 327, 603, 628
MluCI	AATT	3 cut(s)	197, 289, 867
MnlI	CCTC	4 cut(s)	72, 383, 421, 572
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	3 cut(s)	672, 834, 892
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	2 cut(s)	242, 442
MspR9I	CCNGG	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	594
NdeII	GATC	5 cut(s)	247, 253, 299, 548, 806
NlaIII	CATG	4 cut(s)	494, 511, 557, 731
NlaIV	GGNNCC	2 cut(s)	324, 352
NmuCI	GTSAC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	731
PaqCI	CACCTGC	1 cut(s)	727
PciI	ACATGT	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	177, 365
PflFI	GACNNNGTC	1 cut(s)	564
PkrI	GCNGC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	362
PscI	ACATGT	1 cut(s)	727
Psp124BI	GAGCTC	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	324, 352
PspPI	GGNCC	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	247, 806
PsyI	GACNNNGTC	1 cut(s)	564
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
RseI	CAYNNNNRTG	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	628
SalI	GTCGAC	1 cut(s)	679
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	672, 834, 892
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	5 cut(s)	247, 253, 299, 548, 806
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	4 cut(s)	288, 327, 603, 628
SexAI	ACCWGGT	1 cut(s)	592
SfaNI	GCATC	1 cut(s)	504
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	3 cut(s)	197, 289, 867
SsiI	CCGC	5 cut(s)	240, 267, 692, 698, 743
SspMI	CTAG	4 cut(s)	317, 344, 387, 804
SstI	GAGCTC	1 cut(s)	628
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	350, 605
TaiI	ACGT	3 cut(s)	26, 364, 618
TaqI	TCGA	3 cut(s)	260, 680, 716
TasI	AATT	3 cut(s)	197, 289, 867
TfiI	GAWTC	2 cut(s)	177, 365
Tru1I	TTAA	3 cut(s)	672, 834, 892
Tru9I	TTAA	3 cut(s)	672, 834, 892
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	3 cut(s)	74, 496, 570
TspGWI	ACGGA	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	350
XceI	RCATGY	1 cut(s)	731
XmiI	GTMKAC	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	4 cut(s)	317, 344, 387, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.