Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Reverse (-)

29517547 .. 29519040

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1246800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTACTTTTCTCAGATTTACTAGTACTACCGGTACTGGCTTTCAACTTAAGAATCCTCAAAACCCATTCCATCTCCATTCTCATTCTCAAACACGTACCCTCTCAACCCAAAAAAGACTAGTAACCCCAATGGCTGCTCTCAGCATTACCTCGCCTACCACCAACATCTCACACACATTTAGAAAACTCAAGGACCAAGGCAAAGTGGCATTTATCCCCTACATCACCGCCGGCGATCCTGATCTTTCAACCACGGCTCAAGCTTTGAAGATGCTCGATTCTTGTGGATCAGACTTGATCGAATTAGGCGTGCCATACTCGGATCCAATAATAGACGGTCCAGTTATTCAGGCTTCAGCCACACGTTCCTTGGCAAGAGGGACGAATTTCAACGCAATTATGTCAATGTTGAAGGAGGTGGTGCCACAATTGTCTTGTCCAATTGTTCTATTTTCGTACCTCAACCCGATTCTTAATCATGGTGTTGAAAAGTTCATGCACAACATTATGGACGTTGGGGTACATGGGCTTGTGGTTCCAGACGCTCCATTTGAAGTGACAAAAAGTTTGAGAATCGAAGCTGTGAAAAATAAGATAGAGTTGGCTCTACTAACTACACCAACTACTCCAACAGATCGAATGAAAGACATTGTTGAAGCTTCCGAAGGATTTGTATACCTCGTGAGCTCCGTGGGAGTTACCGGTGTACGTGAATCCGTGAATGAACAAGTTCCAACCCTTTTAAGGGAAATTAGAGAGGCGACAAGCAAGCCTGTGGCAGTTGGCTTTGGGCTCTCAAAGCCTGAACACTTAAAGAAAGTAGCCGAGTGGGGAGCTGATGGTGCTATTGTTGGTAGTGCCATTGTGAAGGTGTTGGGTGAAGCTAAATCTCCCAAGGAAGGGTTGAAAGAACTTGAAATCTTCATCAAATCGTTGAAATCTGCATTATTGGACTTGTTTTGGTGGTTCATATCTGTTGGTTCTTCTCTGGTATGGAGGTTTTGGTGGCGATTTTTGGTTGGGGGTTTTTCCTTGTTGCTAGTTGATTTGTGGCACGATTCCTTCGTCAAATTCGACGCGGAGTTGGTTTTCTTCGGGCGATTACCTGTGCAGTTGTTGGCAAGGGGATGGCATCGGCCGTGGTCGGCCCTTGCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

388

Amino Acids

42.68

Weight (kDa)

8.72

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	61 - 316	1.7e-90	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	1 cut(s)	1082
AciI	CCGC	2 cut(s)	231, 1082
AclWI	GGATC	4 cut(s)	233, 298, 320, 333
AcoI	YGGCCR	1 cut(s)	1139
AcsI	RAATTY	2 cut(s)	388, 1073
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	6 cut(s)	28, 37, 100, 461, 525, 711
AfiI	CCNNNNNNNGG	4 cut(s)	747, 748, 902, 903
AflII	CTTAAG	1 cut(s)	50
AflIII	ACRYGT	2 cut(s)	95, 365
AgeI	ACCGGT	2 cut(s)	32, 704
AhlI	ACTAGT	2 cut(s)	23, 121
AluBI	AGCT	6 cut(s)	266, 584, 662, 690, 839, 887
AluI	AGCT	6 cut(s)	266, 584, 662, 690, 839, 887
Alw21I	GWGCWC	1 cut(s)	692
AlwI	GGATC	4 cut(s)	233, 298, 320, 333
AoxI	GGCC	2 cut(s)	1139, 1149
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	2 cut(s)	388, 1073
ArsI	GACNNNNNNTTYG	4 cut(s)	536, 553, 568, 585
AsiGI	ACCGGT	2 cut(s)	32, 704
Asp700I	GAANNNNTTC	1 cut(s)	732
AspS9I	GGNCC	3 cut(s)	196, 341, 1150
AsuHPI	GGTGA	2 cut(s)	220, 893
AvaII	GGWCC	2 cut(s)	196, 341
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	2 cut(s)	692, 798
BauI	CACGAG	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	692
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	3 cut(s)	81, 836, 1125
BceAI	ACGGC	2 cut(s)	273, 1126
BcuI	ACTAGT	2 cut(s)	23, 121
BfaI	CTAG	3 cut(s)	24, 122, 1043
BfrI	CTTAAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmcAI	AGTACT	1 cut(s)	28
Bme18I	GGWCC	2 cut(s)	196, 341
BmgT120I	GGNCC	3 cut(s)	196, 341, 1150
BmiI	GGNNCC	3 cut(s)	327, 426, 540
BmsI	GCATC	2 cut(s)	264, 1144
BpuEI	CTTGAG	2 cut(s)	176, 246
BsaAI	YACGTR	2 cut(s)	98, 713
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	6 cut(s)	199, 255, 372, 693, 897, 1142
BsaWI	WCCGGW	2 cut(s)	32, 704
Bsc4I	CCNNNNNNNGG	4 cut(s)	747, 748, 902, 903
Bse118I	RCCGGY	3 cut(s)	32, 233, 704
Bse1I	ACTGG	2 cut(s)	43, 344
Bse8I	GATNNNNATC	1 cut(s)	243
BseDI	CCNNGG	6 cut(s)	199, 255, 372, 693, 897, 1142
BseGI	GGATG	1 cut(s)	1136
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	4 cut(s)	747, 748, 902, 903
BseMII	CTCAG	2 cut(s)	28, 157
BseNI	ACTGG	2 cut(s)	43, 344
BseX3I	CGGCCG	1 cut(s)	1139
BseXI	GCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	1133
Bsh1236I	CGCG	1 cut(s)	1082
Bsh1285I	CGRYCG	1 cut(s)	1142
BshFI	GGCC	2 cut(s)	1141, 1151
BshNI	GGYRCC	1 cut(s)	424
BshTI	ACCGGT	2 cut(s)	32, 704
BsiEI	CGRYCG	1 cut(s)	1142
BsiHKAI	GWGCWC	1 cut(s)	692
BsiSI	CCGG	3 cut(s)	33, 234, 705
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	4 cut(s)	747, 748, 902, 903
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	1141, 1151
Bsp1286I	GDGCHC	2 cut(s)	692, 798
Bsp143I	GATC	6 cut(s)	238, 244, 290, 300, 325, 637
BspACI	CCGC	2 cut(s)	231, 1082
BspANI	GGCC	2 cut(s)	1141, 1151
BspCNI	CTCAG	2 cut(s)	27, 156
BspFNI	CGCG	1 cut(s)	1082
BspLI	GGNNCC	3 cut(s)	327, 426, 540
BspPI	GGATC	4 cut(s)	233, 298, 320, 333
BspT107I	GGYRCC	1 cut(s)	424
BspTI	CTTAAG	1 cut(s)	50
BsrFI	RCCGGY	3 cut(s)	32, 233, 704
BsrI	ACTGG	2 cut(s)	43, 344
BssAI	RCCGGY	3 cut(s)	32, 233, 704
BssECI	CCNNGG	6 cut(s)	199, 255, 372, 693, 897, 1142
BssMI	GATC	6 cut(s)	238, 244, 290, 300, 325, 637
BssNAI	GTATAC	1 cut(s)	679
BssSI	CACGAG	1 cut(s)	683
BssT1I	CCWWGG	3 cut(s)	199, 372, 897
Bst1107I	GTATAC	1 cut(s)	679
Bst2BI	CACGAG	1 cut(s)	683
Bst4CI	ACNGT	1 cut(s)	341
BstAFI	CTTAAG	1 cut(s)	50
BstBAI	YACGTR	2 cut(s)	98, 713
BstC8I	GCNNGC	3 cut(s)	235, 314, 773
BstDEI	CTNAG	2 cut(s)	14, 143
BstDSI	CCRYGG	3 cut(s)	255, 693, 1142
BstF5I	GGATG	1 cut(s)	1136
BstFNI	CGCG	1 cut(s)	1082
BstKTI	GATC	6 cut(s)	241, 247, 293, 303, 328, 640
BstMBI	GATC	6 cut(s)	238, 244, 290, 300, 325, 637
BstMCI	CGRYCG	1 cut(s)	1142
BstMWI	GCNNNNNNNGC	2 cut(s)	802, 845
BstUI	CGCG	1 cut(s)	1082
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	679
BstZI	CGGCCG	1 cut(s)	1139
BsuRI	GGCC	2 cut(s)	1141, 1151
BtgI	CCRYGG	3 cut(s)	255, 693, 1142
BtsCI	GGATG	1 cut(s)	1136
Cac8I	GCNNGC	3 cut(s)	235, 314, 773
Cfr10I	RCCGGY	3 cut(s)	32, 233, 704
Cfr13I	GGNCC	3 cut(s)	196, 341, 1150
CseI	GACGC	2 cut(s)	554, 1088
Csp6I	GTAC	6 cut(s)	27, 36, 99, 460, 524, 710
CspAI	ACCGGT	2 cut(s)	32, 704
CviAII	CATG	3 cut(s)	482, 499, 527
CviQI	GTAC	6 cut(s)	27, 36, 99, 460, 524, 710
DdeI	CTNAG	2 cut(s)	14, 143
DpnI	GATC	6 cut(s)	240, 246, 292, 302, 327, 639
DpnII	GATC	6 cut(s)	238, 244, 290, 300, 325, 637
EaeI	YGGCCR	1 cut(s)	1139
EagI	CGGCCG	1 cut(s)	1139
Ecl136II	GAGCTC	1 cut(s)	690
EclXI	CGGCCG	1 cut(s)	1139
Eco130I	CCWWGG	3 cut(s)	199, 372, 897
Eco24I	GRGCYC	2 cut(s)	692, 798
Eco47I	GGWCC	2 cut(s)	196, 341
Eco52I	CGGCCG	1 cut(s)	1139
Eco53kI	GAGCTC	1 cut(s)	690
Eco57I	CTGAAG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	690
EcoT14I	CCWWGG	3 cut(s)	199, 372, 897
EcoT38I	GRGCYC	2 cut(s)	692, 798
ErhI	CCWWGG	3 cut(s)	199, 372, 897
FaeI	CATG	3 cut(s)	485, 502, 530
FaiI	YATR	9 cut(s)	319, 404, 483, 500, 512, 528, 679, 974, 997
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	3 cut(s)	481, 498, 526
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	1143
FriOI	GRGCYC	2 cut(s)	692, 798
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	3 cut(s)	24, 122, 1043
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	1141, 1151
HapII	CCGG	3 cut(s)	33, 234, 705
HgaI	GACGC	2 cut(s)	554, 1088
Hin1II	CATG	3 cut(s)	485, 502, 530
HindIII	AAGCTT	2 cut(s)	264, 660
HinfI	GANTC	6 cut(s)	55, 281, 472, 576, 716, 1061
HpaII	CCGG	3 cut(s)	33, 234, 705
HphI	GGTGA	2 cut(s)	220, 893
Hpy166II	GTNNAC	2 cut(s)	679, 710
Hpy188I	TCNGA	4 cut(s)	17, 295, 325, 667
Hpy188III	TCNNGA	3 cut(s)	242, 542, 685
Hpy8I	GTNNAC	2 cut(s)	679, 710
Hpy99I	CGWCG	1 cut(s)	1082
HpyAV	CCTTC	5 cut(s)	409, 662, 865, 896, 1075
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	4 cut(s)	97, 367, 516, 712
HpyCH4V	TGCA	3 cut(s)	502, 947, 1114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	802, 845
HpyF3I	CTNAG	2 cut(s)	14, 143
HpySE526I	ACGT	4 cut(s)	97, 367, 516, 712
Hsp92II	CATG	3 cut(s)	485, 502, 530
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	6 cut(s)	238, 244, 290, 300, 325, 637
LmnI	GCTCC	3 cut(s)	553, 695, 836
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	2 cut(s)	264, 1144
MaeI	CTAG	3 cut(s)	24, 122, 1043
MaeII	ACGT	4 cut(s)	97, 367, 516, 712
MaeIII	GTNAC	3 cut(s)	124, 559, 700
MalI	GATC	6 cut(s)	240, 246, 292, 302, 327, 639
MboI	GATC	6 cut(s)	238, 244, 290, 300, 325, 637
MboII	GAAGA	4 cut(s)	283, 916, 978, 1087
MfeI	CAATTG	2 cut(s)	431, 444
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	692, 798
MluCI	AATT	7 cut(s)	305, 388, 399, 431, 444, 753, 1073
MmeI	TCCRAC	2 cut(s)	656, 761
MnlI	CCTC	9 cut(s)	69, 113, 163, 374, 412, 473, 692, 754, 993
MreI	CGCCGGCG	1 cut(s)	233
MroNI	GCCGGC	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	4 cut(s)	51, 477, 746, 815
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	3 cut(s)	33, 234, 705
MunI	CAATTG	2 cut(s)	431, 444
MvnI	CGCG	1 cut(s)	1082
MwoI	GCNNNNNNNGC	2 cut(s)	802, 845
NaeI	GCCGGC	1 cut(s)	235
NdeII	GATC	6 cut(s)	238, 244, 290, 300, 325, 637
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	3 cut(s)	485, 502, 530
NlaIV	GGNNCC	3 cut(s)	327, 426, 540
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	4 cut(s)	309, 690, 1065, 1074
PdiI	GCCGGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	6 cut(s)	55, 281, 472, 576, 716, 1061
PinAI	ACCGGT	2 cut(s)	32, 704
PkrI	GCNGC	1 cut(s)	139
Ppu21I	YACGTR	2 cut(s)	98, 713
Psp124BI	GAGCTC	1 cut(s)	692
PspN4I	GGNNCC	3 cut(s)	327, 426, 540
PspPI	GGNCC	3 cut(s)	196, 341, 1150
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	6 cut(s)	28, 37, 100, 461, 525, 711
RsaNI	GTAC	6 cut(s)	27, 36, 99, 460, 524, 710
SacI	GAGCTC	1 cut(s)	692
SaqAI	TTAA	4 cut(s)	51, 477, 746, 815
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	6 cut(s)	238, 244, 290, 300, 325, 637
Sau96I	GGNCC	3 cut(s)	196, 341, 1150
ScaI	AGTACT	1 cut(s)	28
SduI	GDGCHC	2 cut(s)	692, 798
SfaNI	GCATC	2 cut(s)	264, 1144
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	2 cut(s)	196, 341
SmlI	CTYRAG	3 cut(s)	50, 191, 261
SmoI	CTYRAG	3 cut(s)	50, 191, 261
SpeI	ACTAGT	2 cut(s)	23, 121
Sse9I	AATT	7 cut(s)	305, 388, 399, 431, 444, 753, 1073
SsiI	CCGC	2 cut(s)	231, 1082
SspMI	CTAG	3 cut(s)	24, 122, 1043
SstI	GAGCTC	1 cut(s)	692
StyI	CCWWGG	3 cut(s)	199, 372, 897
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	4 cut(s)	100, 370, 519, 715
TaqI	TCGA	5 cut(s)	279, 303, 579, 640, 1077
TasI	AATT	7 cut(s)	305, 388, 399, 431, 444, 753, 1073
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	6 cut(s)	55, 281, 472, 576, 716, 1061
Tru1I	TTAA	4 cut(s)	51, 477, 746, 815
Tru9I	TTAA	4 cut(s)	51, 477, 746, 815
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	5 cut(s)	487, 659, 741, 916, 961
TspGWI	ACGGA	2 cut(s)	682, 709
Vha464I	CTTAAG	1 cut(s)	50
VpaK11BI	GGWCC	2 cut(s)	196, 341
XapI	RAATTY	2 cut(s)	388, 1073
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	678
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	3 cut(s)	24, 122, 1043
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.