Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Reverse (-)

8221591 .. 8222703

Gene Structure 1113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG055800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTCTTCTTATTTCTCTAACGTCCACTACCAGCTTTTTTCAACTCATTACAAAGAACCCTCAAAACCCATATTCTCATCTTCATTCTCCATTCCAAACAACAACAAACTTTTCAATCAGGAAACTACTTGGGCCAAATCCAATGGCTGCTCTCACCACCACTGCCCCTAACAGAATCTCAGAAACTTTCACAAAATTGAAGTCACAACGGAAAGTGGCATTTATCCCCAACATCACCGCTGGAGATCCTGATCTCTCGACTACCGCAGAAGCATTGAAGGTGCTCAATTCTTGTGGACCGGACATAATCGAACTAGGGGTGCCCTACTCCTATCCATTACTAGACGGTCCCGTCATACGTGATTCAGCTACTCGTTCCTTGGCTAGAGGGACAAACTTGAACAAGGTTATCTCAATGTTGAAGGAGGTTATTCCACAACTGTCTTGCCCTATCACTCTGATGTCCTACTCTAACCCTATTATCAAGCATGGCATCGTAAACTTCATGTTGAACATTAGTGAAGCAGGCGTAAGTGGGCTTGTGGTTCCGGATGTTCCTTTTGAAGAGACACAACTGTTGAGAATGGAAGCTGCGAAGAATGACATTGAGTTGGTGCTGCTAACCACACCCACTACTACAAGAGATCGCATGAAAGACATTGTCCAAGCTTCGGAGGGATTTGTGTACCTGGTGAGCACGGTGGGGGTTACGTTACTGGAGCTCGTGAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

245

Amino Acids

26.72

Weight (kDa)

6.83

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	64 - 238	1.1e-60	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	322
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	2 cut(s)	240, 267
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	1 cut(s)	673
AgsI	TTSAA	8 cut(s)	44, 117, 202, 280, 403, 424, 514, 566
AjnI	CCWGG	1 cut(s)	690
AluBI	AGCT	5 cut(s)	36, 371, 593, 671, 724
AluI	AGCT	5 cut(s)	36, 371, 593, 671, 724
Alw21I	GWGCWC	3 cut(s)	288, 701, 726
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	149, 593, 619
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspS9I	GGNCC	3 cut(s)	134, 299, 350
AsuHPI	GGTGA	3 cut(s)	148, 229, 706
AvaII	GGWCC	2 cut(s)	299, 350
BaeGI	GKGCMC	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	726
BauI	CACGAG	1 cut(s)	725
Bbv12I	GWGCWC	3 cut(s)	288, 701, 726
BbvI	GCAGC	3 cut(s)	136, 580, 606
BciT130I	CCWGG	1 cut(s)	692
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	3 cut(s)	317, 344, 387
BisI	GCNGC	3 cut(s)	150, 594, 620
BlsI	GCNGC	3 cut(s)	151, 595, 621
Bme1390I	CCNGG	1 cut(s)	692
Bme18I	GGWCC	2 cut(s)	299, 350
BmgT120I	GGNCC	3 cut(s)	134, 299, 350
BmiI	GGNNCC	3 cut(s)	324, 352, 549
BmrFI	CCNGG	1 cut(s)	692
BmsI	GCATC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	2 cut(s)	301, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	673
Bse1I	ACTGG	1 cut(s)	723
Bse8I	GATNNNNATC	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	559
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	673
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	723
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	3 cut(s)	136, 580, 606
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	322
BsiHKAI	GWGCWC	3 cut(s)	288, 701, 726
BsiSI	CCGG	2 cut(s)	302, 551
BslFI	GGGAC	2 cut(s)	336, 406
BslI	CCNNNNNNNGG	1 cut(s)	673
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	2 cut(s)	336, 406
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	4 cut(s)	288, 327, 701, 726
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	247, 253, 646
BspACI	CCGC	2 cut(s)	240, 267
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	194
BspEI	TCCGGA	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	324, 352, 549
BspPI	GGATC	1 cut(s)	242
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	723
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	3 cut(s)	247, 253, 646
BssSI	CACGAG	1 cut(s)	725
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	725
Bst2UI	CCWGG	1 cut(s)	692
Bst4CI	ACNGT	4 cut(s)	350, 444, 579, 703
Bst6I	CTCTTC	2 cut(s)	12, 561
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	3 cut(s)	250, 256, 649
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	3 cut(s)	247, 253, 646
BstNI	CCWGG	1 cut(s)	692
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	136, 580, 606
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	529
Cfr13I	GGNCC	3 cut(s)	134, 299, 350
CsiI	ACCWGGT	1 cut(s)	690
Csp6I	GTAC	1 cut(s)	688
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	4 cut(s)	491, 508, 652, 733
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	3 cut(s)	249, 255, 648
DpnII	GATC	3 cut(s)	247, 253, 646
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	12, 561
EarI	CTCTTC	2 cut(s)	12, 561
Ecl136II	GAGCTC	1 cut(s)	724
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	726
Eco47I	GGWCC	2 cut(s)	299, 350
Eco53kI	GAGCTC	1 cut(s)	724
EcoICRI	GAGCTC	1 cut(s)	724
EcoRII	CCWGG	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	726
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	4 cut(s)	494, 511, 655, 736
FaiI	YATR	7 cut(s)	73, 308, 359, 492, 509, 653, 734
FaqI	GGGAC	2 cut(s)	336, 406
FatI	CATG	4 cut(s)	490, 507, 651, 732
Fnu4HI	GCNGC	3 cut(s)	150, 594, 620
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	726
Fsp4HI	GCNGC	3 cut(s)	150, 594, 620
FspBI	CTAG	3 cut(s)	317, 344, 387
GluI	GCNGC	3 cut(s)	150, 594, 620
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	2 cut(s)	302, 551
Hin1II	CATG	4 cut(s)	494, 511, 655, 736
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	2 cut(s)	177, 365
HpaII	CCGG	2 cut(s)	302, 551
HphI	GGTGA	3 cut(s)	148, 229, 706
Hpy166II	GTNNAC	4 cut(s)	27, 299, 502, 688
Hpy188I	TCNGA	3 cut(s)	184, 462, 676
Hpy188III	TCNNGA	5 cut(s)	121, 251, 259, 551, 727
Hpy8I	GTNNAC	4 cut(s)	27, 299, 502, 688
HpyAV	CCTTC	2 cut(s)	274, 418
HpyCH4III	ACNGT	4 cut(s)	350, 444, 579, 703
HpyCH4IV	ACGT	3 cut(s)	23, 361, 713
HpyF3I	CTNAG	1 cut(s)	181
HpySE526I	ACGT	3 cut(s)	23, 361, 713
Hsp92II	CATG	4 cut(s)	494, 511, 655, 736
Kpn2I	TCCGGA	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	247, 253, 646
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	721
Lsp1109I	GCAGC	3 cut(s)	136, 580, 606
LweI	GCATC	1 cut(s)	504
MabI	ACCWGGT	1 cut(s)	690
MaeI	CTAG	3 cut(s)	317, 344, 387
MaeII	ACGT	3 cut(s)	23, 361, 713
MaeIII	GTNAC	3 cut(s)	204, 709, 714
MalI	GATC	3 cut(s)	249, 255, 648
MboI	GATC	3 cut(s)	247, 253, 646
MboII	GAAGA	3 cut(s)	74, 578, 610
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	4 cut(s)	288, 327, 701, 726
MluCI	AATT	2 cut(s)	197, 289
MnlI	CCTC	4 cut(s)	72, 383, 421, 670
MroI	TCCGGA	1 cut(s)	550
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	302, 551
MspR9I	CCNGG	1 cut(s)	692
MvaI	CCWGG	1 cut(s)	692
NdeII	GATC	3 cut(s)	247, 253, 646
NlaIII	CATG	4 cut(s)	494, 511, 655, 736
NlaIV	GGNNCC	3 cut(s)	324, 352, 549
NmuCI	GTSAC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	736
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	177, 365
PflFI	GACNNNGTC	1 cut(s)	662
PkrI	GCNGC	3 cut(s)	151, 595, 621
Ppu21I	YACGTR	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	726
Psp6I	CCWGG	1 cut(s)	690
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	3 cut(s)	324, 352, 549
PspPI	GGNCC	3 cut(s)	134, 299, 350
PsuI	RGATCY	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	662
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
RseI	CAYNNNNRTG	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	726
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	3 cut(s)	150, 594, 620
Sau3AI	GATC	3 cut(s)	247, 253, 646
Sau96I	GGNCC	3 cut(s)	134, 299, 350
ScrFI	CCNGG	1 cut(s)	692
SduI	GDGCHC	4 cut(s)	288, 327, 701, 726
SexAI	ACCWGGT	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	504
SinI	GGWCC	2 cut(s)	299, 350
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	2 cut(s)	197, 289
SsiI	CCGC	2 cut(s)	240, 267
SspMI	CTAG	3 cut(s)	317, 344, 387
SstI	GAGCTC	1 cut(s)	726
StyD4I	CCNGG	1 cut(s)	690
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	4 cut(s)	350, 444, 579, 703
TaiI	ACGT	3 cut(s)	26, 364, 716
TaqI	TCGA	2 cut(s)	260, 312
TasI	AATT	2 cut(s)	197, 289
TfiI	GAWTC	2 cut(s)	177, 365
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	3 cut(s)	149, 593, 619
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	3 cut(s)	74, 496, 668
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	299, 350
XceI	RCATGY	1 cut(s)	736
XspI	CTAG	3 cut(s)	317, 344, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.