FvH4_6g10830

Belongs to the TrpA family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
6498499 .. 6499607
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10830.t1

Sequence Viewer

Length: 963 bp
ATGGCTATTCCTACTTCAGACTTCCTTCAGATGAATACTAGGATACCTGAGAACCCATTTCATCATCTTCCTTTTGCATCACAAAGAGCATTAACCTTTTCAGTCAAGAAACTAGCTTGGCCAAATCCAAGGGCGGCTCTCACCCTCACTCGTGCCCCTAGTCCTACCATAAACATCTCACAAACTTTCACAAAATTGAAATCACAAGGGAAAGTGGCCTTCATTCCCTACATCACTGCCGGCGATCCCGATCTCACGACAACCATTCAAGCCCTGAAGGTGCTCGATTCTTGTGGATCCGATGTCATCGAGCTAGGCATACCGTGCTCCGATCCCTCACTAGACGGTCCGGTCATACGTGCTTCAGCGTCACGTTCCTTGGCAGGAGGGACAAAGCTCAACAATATCATCTCAATGTTAGAAGATGTTATTCCCCAGCTGTCGTGCCCTATCACTCTATTATCCTACTCTAAACCTATTATCAGATATGGCATCGGAAACTTCATGTCTACCATTAGCCAAATAGGAGTCCGTGGGCTTGTGGTTCCGGATGTGCCTTTTGAAAACACACAAAGTTTGAGAAATGAAGCGGCGAAGAACAACGTTGAGTTGGTGCTGCTAACTACACCTACTACTACAACATCTCAAATGAAAAACATTGTCCGAGCCTCGGAAGGTTTTGTTTACCTGGTGAGTGCGCTGGGGGTCACCGGAGCTCGTCCGCGTGTGAACCAACAAGTTCCGAATCTCTTGAGGGAGATTAAGGAGGTGACAAGCAAGGCGGTGGCGGTTGGGTTCGGGTTGTCGAAGCCGGAGCATGTGAAGCAGGTGGCGGAGTGGGGAGCGGATGGTGCGATTGTCGGTAGTGCTATTGTGAAGGTACTGGGCGAAGCTAGATCTCCATTGCAAGGGTTGAGAGACCTTGAATCTTTCGCCAAATCTTTCAAATCTGCTCTCCCGTAA

Protein Analysis

321

Amino Acids

34.32

Weight (kDa)

9.46

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_syntA PF00290 63 - 318 6.7e-87 Tryptophan synthase alpha chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 817
AasI GACNNNNNNGTC 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 817
AccBSI CCGCTC 1 cut(s) 845
AccI GTMKAC 1 cut(s) 509
AccII CGCG 1 cut(s) 724
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 7 cut(s) 134, 590, 722, 782, 788, 833, 845
AclI AACGTT 1 cut(s) 603
AclWI GGATC 4 cut(s) 239, 291, 304, 326
AcoI YGGCCR 1 cut(s) 119
AcuI CTGAAG 3 cut(s) 11, 296, 348
AfaI GTAC 1 cut(s) 882
AfiI CCNNNNNNNGG 2 cut(s) 670, 908
AgsI TTSAA 5 cut(s) 199, 269, 563, 926, 946
AjnI CCWGG 1 cut(s) 687
AluBI AGCT 6 cut(s) 116, 313, 397, 439, 716, 893
AluI AGCT 6 cut(s) 116, 313, 397, 439, 716, 893
Alw21I GWGCWC 3 cut(s) 285, 329, 718
Alw26I GTCTC 1 cut(s) 912
AlwI GGATC 4 cut(s) 239, 291, 304, 326
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 2 cut(s) 119, 216
ApeKI GCWGC 1 cut(s) 616
AspLEI GCGC 1 cut(s) 700
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 4 cut(s) 133, 700, 703, 781
AvaII GGWCC 1 cut(s) 347
BaeGI GKGCMC 2 cut(s) 157, 449
BalI TGGCCA 1 cut(s) 121
BamHI GGATCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 718
BauI CACGAG 1 cut(s) 150
Bbv12I GWGCWC 3 cut(s) 285, 329, 718
BbvI GCAGC 1 cut(s) 603
BccI CCATC 1 cut(s) 842
BciT130I CCWGG 1 cut(s) 689
BciVI GTATCC 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 912
BfaI CTAG 6 cut(s) 39, 113, 159, 314, 341, 894
BfuAI ACCTGC 1 cut(s) 817
BfuI GTATCC 1 cut(s) 36
BglII AGATCT 1 cut(s) 896
BisI GCNGC 3 cut(s) 135, 591, 617
BlsI GCNGC 3 cut(s) 136, 592, 618
Bme1390I CCNGG 1 cut(s) 689
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 298, 546
BmrFI CCNGG 1 cut(s) 689
BmrI ACTGGG 1 cut(s) 893
BmsI GCATC 2 cut(s) 86, 501
BmuI ACTGGG 1 cut(s) 893
BpuEI CTTGAG 1 cut(s) 772
BsaAI YACGTR 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 912
BsaJI CCNNGG 4 cut(s) 128, 378, 532, 669
BsaWI WCCGGW 3 cut(s) 349, 547, 710
Bsc4I CCNNNNNNNGG 2 cut(s) 670, 908
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 888
Bse3DI GCAATG 1 cut(s) 902
Bse8I GATNNNNATC 1 cut(s) 249
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 1 cut(s) 689
BseDI CCNNGG 4 cut(s) 128, 378, 532, 669
BseGI GGATG 2 cut(s) 556, 853
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 2 cut(s) 670, 908
BseMI GCAATG 1 cut(s) 902
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 888
BseSI GKGCMC 2 cut(s) 157, 449
BseXI GCAGC 1 cut(s) 603
BseYI CCCAGC 2 cut(s) 435, 700
Bsh1236I CGCG 1 cut(s) 724
BshFI GGCC 2 cut(s) 121, 218
BsiHKAI GWGCWC 3 cut(s) 285, 329, 718
BsiSI CCGG 5 cut(s) 240, 350, 548, 711, 812
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 2 cut(s) 670, 908
BsmAI GTCTC 1 cut(s) 912
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 2 cut(s) 121, 218
Bso31I GGTCTC 1 cut(s) 912
Bsp1286I GDGCHC 5 cut(s) 157, 285, 329, 449, 718
Bsp13I TCCGGA 1 cut(s) 547
Bsp143I GATC 5 cut(s) 244, 250, 296, 331, 896
BspACI CCGC 7 cut(s) 134, 590, 722, 782, 788, 833, 845
BspANI GGCC 2 cut(s) 121, 218
BspCNI CTCAG 1 cut(s) 40
BspEI TCCGGA 1 cut(s) 547
BspFNI CGCG 1 cut(s) 724
BspLI GGNNCC 2 cut(s) 298, 546
BspMI ACCTGC 1 cut(s) 817
BspPI GGATC 4 cut(s) 239, 291, 304, 326
BspTNI GGTCTC 1 cut(s) 912
BsrBI CCGCTC 1 cut(s) 845
BsrDI GCAATG 1 cut(s) 902
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 888
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 4 cut(s) 128, 378, 532, 669
BssMI GATC 5 cut(s) 244, 250, 296, 331, 896
BssSI CACGAG 1 cut(s) 150
BssT1I CCWWGG 2 cut(s) 128, 378
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 689
Bst4CI ACNGT 2 cut(s) 324, 347
BstAPI GCANNNNNTGC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 532
BstEII GGTNACC 1 cut(s) 706
BstF5I GGATG 2 cut(s) 556, 853
BstFNI CGCG 1 cut(s) 724
BstHHI GCGC 1 cut(s) 700
BstKTI GATC 5 cut(s) 247, 253, 299, 334, 899
BstMAI GTCTC 1 cut(s) 912
BstMBI GATC 5 cut(s) 244, 250, 296, 331, 896
BstMWI GCNNNNNNNGC 3 cut(s) 324, 823, 851
BstNI CCWGG 1 cut(s) 689
BstNSI RCATGY 1 cut(s) 821
BstPI GGTNACC 1 cut(s) 706
BstSCI CCNGG 1 cut(s) 687
BstSLI GKGCMC 2 cut(s) 157, 449
BstUI CGCG 1 cut(s) 724
BstV1I GCAGC 1 cut(s) 603
BstX2I RGATCY 2 cut(s) 296, 896
BstYI RGATCY 2 cut(s) 296, 896
BsuI GTATCC 1 cut(s) 36
BsuRI GGCC 2 cut(s) 121, 218
BtgI CCRYGG 1 cut(s) 532
BtsCI GGATG 2 cut(s) 556, 853
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 817
Cac8I GCNNGC 1 cut(s) 241
CfoI GCGC 1 cut(s) 700
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 347
CpoI CGGWCCG 1 cut(s) 347
CseI GACGC 1 cut(s) 357
CsiI ACCWGGT 1 cut(s) 687
Csp6I GTAC 1 cut(s) 881
CspI CGGWCCG 1 cut(s) 347
CviAII CATG 2 cut(s) 505, 818
CviQI GTAC 1 cut(s) 881
DdeI CTNAG 1 cut(s) 48
DpnI GATC 5 cut(s) 246, 252, 298, 333, 898
DpnII GATC 5 cut(s) 244, 250, 296, 331, 896
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 119
EciI GGCGGA 1 cut(s) 848
Ecl136II GAGCTC 1 cut(s) 716
Eco130I CCWWGG 2 cut(s) 128, 378
Eco24I GRGCYC 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 912
Eco47I GGWCC 1 cut(s) 347
Eco53kI GAGCTC 1 cut(s) 716
Eco57I CTGAAG 3 cut(s) 11, 296, 348
Eco91I GGTNACC 1 cut(s) 706
EcoICRI GAGCTC 1 cut(s) 716
EcoO65I GGTNACC 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 687
EcoT14I CCWWGG 2 cut(s) 128, 378
EcoT38I GRGCYC 1 cut(s) 718
ErhI CCWWGG 2 cut(s) 128, 378
FaeI CATG 2 cut(s) 508, 821
FaiI YATR 6 cut(s) 170, 320, 356, 489, 506, 819
FaqI GGGAC 1 cut(s) 403
FatI CATG 2 cut(s) 504, 817
FblI GTMKAC 1 cut(s) 509
Fnu4HI GCNGC 3 cut(s) 135, 591, 617
FokI GGATG 2 cut(s) 563, 860
FriOI GRGCYC 1 cut(s) 718
Fsp4HI GCNGC 3 cut(s) 135, 591, 617
FspBI CTAG 6 cut(s) 39, 113, 159, 314, 341, 894
GlaI GCGC 1 cut(s) 699
GluI GCNGC 3 cut(s) 135, 591, 617
GsaI CCCAGC 2 cut(s) 439, 704
HaeIII GGCC 2 cut(s) 121, 218
HapII CCGG 5 cut(s) 240, 350, 548, 711, 812
HgaI GACGC 1 cut(s) 357
HhaI GCGC 1 cut(s) 700
Hin1II CATG 2 cut(s) 508, 821
Hin6I GCGC 1 cut(s) 698
HinP1I GCGC 1 cut(s) 698
HinfI GANTC 4 cut(s) 287, 528, 745, 926
HpaII CCGG 5 cut(s) 240, 350, 548, 711, 812
HphI GGTGA 4 cut(s) 133, 700, 703, 781
Hpy166II GTNNAC 3 cut(s) 510, 685, 730
Hpy188I TCNGA 9 cut(s) 19, 30, 301, 331, 485, 497, 665, 673, 744
Hpy188III TCNNGA 5 cut(s) 106, 248, 256, 548, 751
Hpy8I GTNNAC 3 cut(s) 510, 685, 730
HpyAV CCTTC 5 cut(s) 35, 229, 271, 668, 871
HpyCH4III ACNGT 2 cut(s) 324, 347
HpyCH4IV ACGT 3 cut(s) 358, 373, 603
HpyCH4V TGCA 2 cut(s) 77, 907
HpyF10VI GCNNNNNNNGC 3 cut(s) 324, 823, 851
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 3 cut(s) 358, 373, 603
Hsp92II CATG 2 cut(s) 508, 821
HspAI GCGC 1 cut(s) 698
Kpn2I TCCGGA 1 cut(s) 547
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Kzo9I GATC 5 cut(s) 244, 250, 296, 331, 896
LmnI GCTCC 4 cut(s) 332, 713, 814, 842
Lsp1109I GCAGC 1 cut(s) 603
LweI GCATC 2 cut(s) 86, 501
MabI ACCWGGT 1 cut(s) 687
MaeI CTAG 6 cut(s) 39, 113, 159, 314, 341, 894
MaeII ACGT 3 cut(s) 358, 373, 603
MaeIII GTNAC 3 cut(s) 369, 706, 769
MalI GATC 5 cut(s) 246, 252, 298, 333, 898
MbiI CCGCTC 1 cut(s) 845
MboI GATC 5 cut(s) 244, 250, 296, 331, 896
MboII GAAGA 3 cut(s) 59, 434, 607
MflI RGATCY 2 cut(s) 296, 896
MhlI GDGCHC 5 cut(s) 157, 285, 329, 449, 718
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 1 cut(s) 537
MnlI CCTC 6 cut(s) 155, 346, 380, 679, 747, 760
Mox20I TGGCCA 1 cut(s) 121
MroI TCCGGA 1 cut(s) 547
MroNI GCCGGC 1 cut(s) 239
MscI TGGCCA 1 cut(s) 121
MseI TTAA 2 cut(s) 92, 762
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 1 cut(s) 121
MspA1I CMGCKG 1 cut(s) 439
MspI CCGG 5 cut(s) 240, 350, 548, 711, 812
MspR9I CCNGG 1 cut(s) 689
MvaI CCWGG 1 cut(s) 689
MvnI CGCG 1 cut(s) 724
MwoI GCNNNNNNNGC 3 cut(s) 324, 823, 851
NaeI GCCGGC 1 cut(s) 241
NdeII GATC 5 cut(s) 244, 250, 296, 331, 896
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 2 cut(s) 508, 821
NlaIV GGNNCC 2 cut(s) 298, 546
NmuCI GTSAC 3 cut(s) 369, 706, 769
NspI RCATGY 1 cut(s) 821
PaqCI CACCTGC 1 cut(s) 817
PdiI GCCGGC 1 cut(s) 241
PfeI GAWTC 3 cut(s) 287, 745, 926
PkrI GCNGC 3 cut(s) 136, 592, 618
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
Ppu21I YACGTR 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 718
Psp1406I AACGTT 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 687
PspEI GGTNACC 1 cut(s) 706
PspFI CCCAGC 2 cut(s) 435, 700
PspGI CCWGG 1 cut(s) 687
PspN4I GGNNCC 2 cut(s) 298, 546
PspPI GGNCC 1 cut(s) 347
PsuI RGATCY 2 cut(s) 296, 896
PvuII CAGCTG 1 cut(s) 439
RsaI GTAC 1 cut(s) 882
RsaNI GTAC 1 cut(s) 881
RseI CAYNNNNRTG 1 cut(s) 413
Rsr2I CGGWCCG 1 cut(s) 347
RsrII CGGWCCG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 718
SaqAI TTAA 2 cut(s) 92, 762
SatI GCNGC 3 cut(s) 135, 591, 617
Sau3AI GATC 5 cut(s) 244, 250, 296, 331, 896
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 1 cut(s) 689
SduI GDGCHC 5 cut(s) 157, 285, 329, 449, 718
SexAI ACCWGGT 1 cut(s) 687
SfaNI GCATC 2 cut(s) 86, 501
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 751
SmoI CTYRAG 1 cut(s) 751
Sse9I AATT 1 cut(s) 194
SsiI CCGC 7 cut(s) 134, 590, 722, 782, 788, 833, 845
SspMI CTAG 6 cut(s) 39, 113, 159, 314, 341, 894
SstI GAGCTC 1 cut(s) 718
StyD4I CCNGG 1 cut(s) 687
StyI CCWWGG 2 cut(s) 128, 378
TaaI ACNGT 2 cut(s) 324, 347
TaiI ACGT 3 cut(s) 361, 376, 606
TaqI TCGA 3 cut(s) 285, 309, 806
TasI AATT 1 cut(s) 194
TauI GCSGC 2 cut(s) 137, 593
TfiI GAWTC 3 cut(s) 287, 745, 926
Tru1I TTAA 2 cut(s) 92, 762
Tru9I TTAA 2 cut(s) 92, 762
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 3 cut(s) 369, 706, 769
TseI GCWGC 1 cut(s) 616
Tsp45I GTSAC 3 cut(s) 369, 706, 769
TspDTI ATGAA 6 cut(s) 47, 50, 211, 493, 600, 665
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 347
XceI RCATGY 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 509
XspI CTAG 6 cut(s) 39, 113, 159, 314, 341, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.