Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Reverse (-)

40044279 .. 40045106

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTGCTCTCACCCAACCTCGTGCCCCTAGCATAAGCATTTCACAAACTTTCACAAAATTGAAGTCACAAGGGAAAGTGGCATTCATCCCCTACATCACCGCCGGCGATCCAGATCTCTCAACAACTGGGGCGGCATTGCAGGTGCTCGATTCTTGTGGATCAGACGTAATCGAACTAGGCCTTCCCTACTCCGATCCGTTACTAGACGGTCCTGTCATATGTGCTTCAGCCACCCGTTCCTTGGCTAGAGGGACAAACTTCAACAAAGTCATCTCAATGTTGAAGGAAGTTGTTCCACAACTGTCTTGCCCCATTCTTCTTTTTTCATACTATAACCCTATCATCAAGCGTGGCATCGAAAACTATATGTTCACCATTAGTCAAGCAGGTGTACGTGGGCTTGTGGTTCCGGATGTTCCTTTTGAAGAGACACAAATCTTAAGGAAGGAAGCTGCGAAAAATAACATCGAGTTGGTGCTACTGACCACTCCAGCTACTACAACAGACCGAATGAAAGACATCGTCAAAGCTTCAGAGGGATTTGTGTACCTAGTAAGCACGGTGGGGGTCACCGGAGCTCGTGCGCATGTGAACGAACAAGTTCCGAGTCTTTTGAGGGAGATTAAGGATGCCACCAGCAAGGCAGTGGCAGTTGGGTTTGGGCTGTCAAAGCCTGAACATGTGAAACAGGTTGCTGAGTGGGGGGCTGATGGCGTTATTGTTGGTAGTGCCATTGTGAAGGTTCTAGGTGAAGCTAGATCTCCTCTTGAAGGGTTGAGAGAACTTGAAACTTTCACCAAGTCTTTCAAGTCTGCTCTCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

276

Amino Acids

29.48

Weight (kDa)

8.35

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	18 - 273	9.8e-90	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	133, 380
AasI	GACNNNNNNGTC	1 cut(s)	215
Acc16I	TGCGCA	1 cut(s)	588
Acc36I	ACCTGC	2 cut(s)	133, 380
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	2 cut(s)	102, 134
AclWI	GGATC	3 cut(s)	104, 169, 191
AcuI	CTGAAG	2 cut(s)	213, 519
AfaI	GTAC	2 cut(s)	396, 551
AfiI	CCNNNNNNNGG	2 cut(s)	244, 773
AflII	CTTAAG	1 cut(s)	442
AflIII	ACRYGT	1 cut(s)	682
AgsI	TTSAA	7 cut(s)	64, 265, 286, 428, 773, 791, 811
AluBI	AGCT	5 cut(s)	455, 497, 533, 581, 758
AluI	AGCT	5 cut(s)	455, 497, 533, 581, 758
Alw21I	GWGCWC	2 cut(s)	150, 583
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	3 cut(s)	104, 169, 191
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	5, 455
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
Asp700I	GAANNNNTTC	2 cut(s)	294, 603
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	6 cut(s)	4, 91, 367, 565, 764, 790
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	583
BauI	CACGAG	2 cut(s)	21, 582
Bbv12I	GWGCWC	2 cut(s)	150, 583
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	707
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	7 cut(s)	30, 179, 206, 249, 554, 749, 759
BfrI	CTTAAG	1 cut(s)	442
BfuAI	ACCTGC	2 cut(s)	133, 380
BglII	AGATCT	2 cut(s)	115, 761
BisI	GCNGC	3 cut(s)	6, 135, 456
BlsI	GCNGC	3 cut(s)	7, 136, 457
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	411
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	366, 622
BmuI	ACTGGG	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	2 cut(s)	412, 575
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 773
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	3 cut(s)	87, 421, 637
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	244, 773
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	756
BseSI	GKGCMC	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	2 cut(s)	150, 583
BsiSI	CCGG	3 cut(s)	105, 413, 576
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	244, 773
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	3 cut(s)	28, 150, 583
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	5 cut(s)	109, 115, 161, 196, 761
BspACI	CCGC	2 cut(s)	102, 134
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	691
BspEI	TCCGGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	411
BspMI	ACCTGC	2 cut(s)	133, 380
BspPI	GGATC	3 cut(s)	104, 169, 191
BspTI	CTTAAG	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	5 cut(s)	109, 115, 161, 196, 761
BssSI	CACGAG	2 cut(s)	21, 582
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	2 cut(s)	21, 582
Bst4CI	ACNGT	3 cut(s)	212, 306, 565
Bst6I	CTCTTC	1 cut(s)	423
BstAFI	CTTAAG	1 cut(s)	442
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	699
BstEII	GGTNACC	1 cut(s)	571
BstENI	CCTNNNNNAGG	1 cut(s)	771
BstF5I	GGATG	3 cut(s)	87, 421, 637
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	5 cut(s)	112, 118, 164, 199, 764
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	5 cut(s)	109, 115, 161, 196, 761
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNSI	RCATGY	2 cut(s)	593, 686
BstPI	GGTNACC	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	442
BstX2I	RGATCY	2 cut(s)	115, 761
BstYI	RGATCY	2 cut(s)	115, 761
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	87, 421, 637
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	654
BveI	ACCTGC	2 cut(s)	133, 380
Cac8I	GCNNGC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	395, 550
CviAII	CATG	2 cut(s)	590, 683
CviQI	GTAC	2 cut(s)	395, 550
DdeI	CTNAG	1 cut(s)	699
DpnI	GATC	5 cut(s)	111, 117, 163, 198, 763
DpnII	GATC	5 cut(s)	109, 115, 161, 196, 761
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	581
Eco57I	CTGAAG	2 cut(s)	213, 519
Eco91I	GGTNACC	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	581
EcoNI	CCTNNNNNAGG	1 cut(s)	771
EcoO65I	GGTNACC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	2 cut(s)	593, 686
FaiI	YATR	9 cut(s)	35, 221, 223, 331, 336, 369, 371, 591, 684
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	589, 682
FauNDI	CATATG	1 cut(s)	221
Fnu4HI	GCNGC	3 cut(s)	6, 135, 456
FokI	GGATG	3 cut(s)	74, 428, 644
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	3 cut(s)	6, 135, 456
FspAI	RTGCGCAY	1 cut(s)	588
FspBI	CTAG	7 cut(s)	30, 179, 206, 249, 554, 749, 759
FspI	TGCGCA	1 cut(s)	588
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	3 cut(s)	6, 135, 456
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	3 cut(s)	105, 413, 576
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	2 cut(s)	593, 686
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	2 cut(s)	152, 610
HpaII	CCGG	3 cut(s)	105, 413, 576
HphI	GGTGA	6 cut(s)	4, 91, 367, 565, 764, 790
Hpy166II	GTNNAC	4 cut(s)	375, 395, 550, 595
Hpy188I	TCNGA	4 cut(s)	166, 196, 538, 609
Hpy188III	TCNNGA	3 cut(s)	113, 413, 770
Hpy8I	GTNNAC	4 cut(s)	375, 395, 550, 595
HpyAV	CCTTC	5 cut(s)	194, 280, 442, 736, 767
HpyCH4III	ACNGT	3 cut(s)	212, 306, 565
HpyCH4IV	ACGT	2 cut(s)	168, 397
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	1 cut(s)	699
HpySE526I	ACGT	2 cut(s)	168, 397
Hsp92II	CATG	2 cut(s)	593, 686
HspAI	GCGC	1 cut(s)	587
Kpn2I	TCCGGA	1 cut(s)	412
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	109, 115, 161, 196, 761
LmnI	GCTCC	1 cut(s)	578
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	2 cut(s)	366, 622
MaeI	CTAG	7 cut(s)	30, 179, 206, 249, 554, 749, 759
MaeII	ACGT	2 cut(s)	168, 397
MaeIII	GTNAC	3 cut(s)	66, 201, 571
MalI	GATC	5 cut(s)	111, 117, 163, 198, 763
MboI	GATC	5 cut(s)	109, 115, 161, 196, 761
MboII	GAAGA	2 cut(s)	311, 440
MflI	RGATCY	2 cut(s)	115, 761
MhlI	GDGCHC	3 cut(s)	28, 150, 583
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	619
MnlI	CCTC	5 cut(s)	30, 245, 532, 612, 777
MreI	CGCCGGCG	1 cut(s)	104
MroI	TCCGGA	1 cut(s)	412
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	2 cut(s)	294, 603
MseI	TTAA	2 cut(s)	443, 627
MslI	CAYNNNNRTG	1 cut(s)	278
MspCI	CTTAAG	1 cut(s)	442
MspI	CCGG	3 cut(s)	105, 413, 576
Mva1269I	GAATGC	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	673
NaeI	GCCGGC	1 cut(s)	106
NdeI	CATATG	1 cut(s)	221
NdeII	GATC	5 cut(s)	109, 115, 161, 196, 761
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	593, 686
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	2 cut(s)	66, 571
NsbI	TGCGCA	1 cut(s)	588
NspI	RCATGY	2 cut(s)	593, 686
PaqCI	CACCTGC	2 cut(s)	133, 380
PceI	AGGCCT	1 cut(s)	183
PciI	ACATGT	1 cut(s)	682
PctI	GAATGC	1 cut(s)	83
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	2 cut(s)	294, 603
PfeI	GAWTC	1 cut(s)	152
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	3 cut(s)	7, 136, 457
PleI	GAGTC	1 cut(s)	618
PpsI	GAGTC	1 cut(s)	618
Ppu21I	YACGTR	1 cut(s)	398
PscI	ACATGT	1 cut(s)	682
Psp124BI	GAGCTC	1 cut(s)	583
PspEI	GGTNACC	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	115, 761
PsyI	GACNNNGTC	1 cut(s)	524
RsaI	GTAC	2 cut(s)	396, 551
RsaNI	GTAC	2 cut(s)	395, 550
RseI	CAYNNNNRTG	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	583
SaqAI	TTAA	2 cut(s)	443, 627
SatI	GCNGC	3 cut(s)	6, 135, 456
Sau3AI	GATC	5 cut(s)	109, 115, 161, 196, 761
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	619
SduI	GDGCHC	3 cut(s)	28, 150, 583
SfaNI	GCATC	2 cut(s)	366, 622
SgrAI	CRCCGGYG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	1 cut(s)	59
SseBI	AGGCCT	1 cut(s)	183
SsiI	CCGC	2 cut(s)	102, 134
SspMI	CTAG	7 cut(s)	30, 179, 206, 249, 554, 749, 759
SstI	GAGCTC	1 cut(s)	583
StuI	AGGCCT	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	3 cut(s)	212, 306, 565
TaiI	ACGT	2 cut(s)	171, 400
TaqI	TCGA	4 cut(s)	150, 174, 360, 471
TaqII	GACCGA	1 cut(s)	525
TasI	AATT	1 cut(s)	59
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	443, 627
Tru9I	TTAA	2 cut(s)	443, 627
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	2 cut(s)	66, 571
TseI	GCWGC	2 cut(s)	5, 455
Tsp45I	GTSAC	2 cut(s)	66, 571
TspDTI	ATGAA	3 cut(s)	76, 318, 530
TspGWI	ACGGA	2 cut(s)	189, 812
TspRI	CASTG	1 cut(s)	654
Tth111I	GACNNNGTC	1 cut(s)	524
Vha464I	CTTAAG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	212
XagI	CCTNNNNNAGG	1 cut(s)	771
XceI	RCATGY	2 cut(s)	593, 686
XcmI	CCANNNNNNNNNTGG	2 cut(s)	241, 646
XmnI	GAANNNNTTC	2 cut(s)	294, 603
XspI	CTAG	7 cut(s)	30, 179, 206, 249, 554, 749, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.