Rroxscaffold_6G00417750

Belongs to the TrpA family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
39383795 .. 39384943
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417750.1

Sequence Viewer

Length: 828 bp
ATGGCTGCTCTCACCCACCCTCGTGCCCCTAGCATAAGCATTTCACAAACTTTCACAAAATTGAAGTCACAAGGGAAAGTGGCATTCATCCCCTACATCACCGCCGGCGATCCAGATCTCTCAACAACCGGGGCAGCATTGAAGGTGCTCGATTCTTGTGGATCAGACGTAATCGAACTAGGCCTTCCCTACTCCGATCCGTTACTAGACGGTCCTGTCATATGTGCTTCAGCCACCCGTTCCTTGGCTAGAGGGACAAACTTCAACAAAGTCATCTCAATGTTGAAGGAAGTTGTTCCACAACTGTCTTGCCCCATTGTTCTTTTTTCATATTATAACCCTATCATCAAGCATGGCATCAAAAACTATATGTTCACCATTAGTCAAGCAGGTGTACGTGGGCTTGTGGTTCCGGATGTTCCTTTTGAAGAGACACAAATCTTAAGGAAGGAAGCTGCGAAAAATAACATCGAGTTGGTGCTACTGACCACTCCAGCTACTACAACAGACCGAATGAAAGACATCGTCAAAGCTTCTGAGGGATTTGTGTACCTAGTGAGCACGGTGGGGGTCACCGGAGCTCGAGCTCGTGTTAACGAACTAGTTCCGAGTCTTTTGAGGGAGATTAAGGATGCCACCAGCAAGGCAGTGGCGGTTGGGTTTGGGCTGTCTAAGCCTGAACATGTGAAACAGGTGGCTGAGTGGGGGGCTGATGGTGTTATTGTTGGTAGTGCCATTGTGAAGGTTCTAGGTGAAGCTAGATCTCCTCTTGAAGGGTTGAGAGAACTTGAAACTTTCACCAAGTCTTTCAAGTCTGCTCTCCATTGA

Protein Analysis

275

Amino Acids

29.44

Weight (kDa)

8.87

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_syntA PF00290 18 - 274 1.2e-88 Tryptophan synthase alpha chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AarI CACCTGC 1 cut(s) 380
AasI GACNNNNNNGTC 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 380
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 2 cut(s) 102, 653
AclWI GGATC 3 cut(s) 104, 169, 191
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 396, 551
AfiI CCNNNNNNNGG 2 cut(s) 244, 773
AflII CTTAAG 1 cut(s) 442
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 8 cut(s) 64, 142, 265, 286, 428, 773, 791, 811
AhlI ACTAGT 1 cut(s) 601
AleI CACNNNNGTG 1 cut(s) 21
AluBI AGCT 6 cut(s) 455, 497, 533, 581, 587, 758
AluI AGCT 6 cut(s) 455, 497, 533, 581, 587, 758
Alw21I GWGCWC 4 cut(s) 150, 563, 583, 589
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 3 cut(s) 104, 169, 191
Ama87I CYCGRG 1 cut(s) 582
Aor13HI TCCGGA 1 cut(s) 412
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 3 cut(s) 5, 134, 455
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
Asp700I GAANNNNTTC 2 cut(s) 294, 603
AspS9I GGNCC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 6 cut(s) 4, 91, 367, 565, 764, 790
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 28
BanII GRGCYC 2 cut(s) 583, 589
BauI CACGAG 2 cut(s) 21, 588
Bbv12I GWGCWC 4 cut(s) 150, 563, 583, 589
BbvI GCAGC 2 cut(s) 146, 442
BccI CCATC 1 cut(s) 707
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 425
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 8 cut(s) 30, 179, 206, 249, 554, 602, 749, 759
BfrI CTTAAG 1 cut(s) 442
BfuAI ACCTGC 1 cut(s) 380
BglII AGATCT 2 cut(s) 115, 761
BisI GCNGC 3 cut(s) 6, 135, 456
BlsI GCNGC 3 cut(s) 7, 136, 457
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 366, 622
BpmI CTGGAG 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 130
BsaAI YACGTR 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 129, 243
BsaWI WCCGGW 2 cut(s) 412, 575
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 773
Bse118I RCCGGY 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 129, 243
BseGI GGATG 3 cut(s) 87, 421, 637
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 244, 773
BseMII CTCAG 2 cut(s) 528, 690
BseRI GAGGAG 1 cut(s) 756
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 2 cut(s) 146, 442
BshFI GGCC 1 cut(s) 183
BsiHKAI GWGCWC 4 cut(s) 150, 563, 583, 589
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 4 cut(s) 105, 129, 413, 576
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 244, 773
BsmAI GTCTC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 582
Bsp1286I GDGCHC 5 cut(s) 28, 150, 563, 583, 589
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 5 cut(s) 109, 115, 161, 196, 761
BspACI CCGC 2 cut(s) 102, 653
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 529, 691
BspEI TCCGGA 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 411
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 3 cut(s) 104, 169, 191
BspTI CTTAAG 1 cut(s) 442
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 129, 243
BssMI GATC 5 cut(s) 109, 115, 161, 196, 761
BssSI CACGAG 2 cut(s) 21, 588
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 2 cut(s) 21, 588
Bst4CI ACNGT 3 cut(s) 212, 306, 565
Bst6I CTCTTC 1 cut(s) 423
BstAFI CTTAAG 1 cut(s) 442
BstBAI YACGTR 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 537, 672, 699
BstEII GGTNACC 1 cut(s) 571
BstENI CCTNNNNNAGG 1 cut(s) 771
BstF5I GGATG 3 cut(s) 87, 421, 637
BstKTI GATC 5 cut(s) 112, 118, 164, 199, 764
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 5 cut(s) 109, 115, 161, 196, 761
BstMWI GCNNNNNNNGC 1 cut(s) 673
BstNSI RCATGY 1 cut(s) 686
BstPI GGTNACC 1 cut(s) 571
BstSCI CCNGG 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 146, 442
BstX2I RGATCY 2 cut(s) 115, 761
BstYI RGATCY 2 cut(s) 115, 761
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 3 cut(s) 87, 421, 637
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 654
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 395, 550
CviAII CATG 2 cut(s) 353, 683
CviQI GTAC 2 cut(s) 395, 550
DdeI CTNAG 3 cut(s) 537, 672, 699
DpnI GATC 5 cut(s) 111, 117, 163, 198, 763
DpnII GATC 5 cut(s) 109, 115, 161, 196, 761
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Ecl136II GAGCTC 2 cut(s) 581, 587
Eco130I CCWWGG 1 cut(s) 243
Eco147I AGGCCT 1 cut(s) 183
Eco24I GRGCYC 2 cut(s) 583, 589
Eco47I GGWCC 1 cut(s) 212
Eco53kI GAGCTC 2 cut(s) 581, 587
Eco57I CTGAAG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 582
Eco91I GGTNACC 1 cut(s) 571
EcoICRI GAGCTC 2 cut(s) 581, 587
EcoNI CCTNNNNNAGG 1 cut(s) 771
EcoO65I GGTNACC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 2 cut(s) 583, 589
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 356, 686
FaiI YATR 9 cut(s) 35, 221, 223, 331, 336, 354, 369, 371, 684
FaqI GGGAC 1 cut(s) 268
FatI CATG 2 cut(s) 352, 682
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 6, 135, 456
FokI GGATG 3 cut(s) 74, 428, 644
FriOI GRGCYC 2 cut(s) 583, 589
Fsp4HI GCNGC 3 cut(s) 6, 135, 456
FspBI CTAG 8 cut(s) 30, 179, 206, 249, 554, 602, 749, 759
GluI GCNGC 3 cut(s) 6, 135, 456
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 1 cut(s) 183
HapII CCGG 4 cut(s) 105, 129, 413, 576
Hin1II CATG 2 cut(s) 356, 686
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 2 cut(s) 152, 610
HpaI GTTAAC 1 cut(s) 595
HpaII CCGG 4 cut(s) 105, 129, 413, 576
HphI GGTGA 6 cut(s) 4, 91, 367, 565, 764, 790
Hpy166II GTNNAC 4 cut(s) 375, 395, 550, 595
Hpy188I TCNGA 4 cut(s) 166, 196, 538, 609
Hpy188III TCNNGA 3 cut(s) 113, 413, 770
Hpy8I GTNNAC 4 cut(s) 375, 395, 550, 595
HpyAV CCTTC 6 cut(s) 136, 194, 280, 442, 736, 767
HpyCH4III ACNGT 3 cut(s) 212, 306, 565
HpyCH4IV ACGT 2 cut(s) 168, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 673
HpyF3I CTNAG 3 cut(s) 537, 672, 699
HpySE526I ACGT 2 cut(s) 168, 397
Hsp92II CATG 2 cut(s) 356, 686
Kpn2I TCCGGA 1 cut(s) 412
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
KspAI GTTAAC 1 cut(s) 595
Kzo9I GATC 5 cut(s) 109, 115, 161, 196, 761
LmnI GCTCC 1 cut(s) 578
Lsp1109I GCAGC 2 cut(s) 146, 442
LweI GCATC 2 cut(s) 366, 622
MaeI CTAG 8 cut(s) 30, 179, 206, 249, 554, 602, 749, 759
MaeII ACGT 2 cut(s) 168, 397
MaeIII GTNAC 3 cut(s) 66, 201, 571
MalI GATC 5 cut(s) 111, 117, 163, 198, 763
MboI GATC 5 cut(s) 109, 115, 161, 196, 761
MboII GAAGA 1 cut(s) 440
MflI RGATCY 2 cut(s) 115, 761
MhlI GDGCHC 5 cut(s) 28, 150, 563, 583, 589
MluCI AATT 1 cut(s) 59
MlyI GAGTC 1 cut(s) 619
MnlI CCTC 5 cut(s) 30, 245, 532, 612, 777
MreI CGCCGGCG 1 cut(s) 104
MroI TCCGGA 1 cut(s) 412
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 2 cut(s) 294, 603
MseI TTAA 3 cut(s) 443, 594, 627
MslI CAYNNNNRTG 2 cut(s) 21, 278
MspCI CTTAAG 1 cut(s) 442
MspI CCGG 4 cut(s) 105, 129, 413, 576
MspR9I CCNGG 1 cut(s) 130
Mva1269I GAATGC 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 673
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 130
NdeI CATATG 1 cut(s) 221
NdeII GATC 5 cut(s) 109, 115, 161, 196, 761
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 356, 686
NlaIV GGNNCC 1 cut(s) 411
NmuCI GTSAC 2 cut(s) 66, 571
NspI RCATGY 1 cut(s) 686
OliI CACNNNNGTG 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 582
PaqCI CACCTGC 1 cut(s) 380
PceI AGGCCT 1 cut(s) 183
PciI ACATGT 1 cut(s) 682
PctI GAATGC 1 cut(s) 83
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 2 cut(s) 294, 603
PfeI GAWTC 1 cut(s) 152
PflFI GACNNNGTC 1 cut(s) 524
PkrI GCNGC 3 cut(s) 7, 136, 457
PleI GAGTC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 618
Ppu21I YACGTR 1 cut(s) 398
PscI ACATGT 1 cut(s) 682
PsiI TTATAA 1 cut(s) 336
Psp124BI GAGCTC 2 cut(s) 583, 589
PspEI GGTNACC 1 cut(s) 571
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 1 cut(s) 212
PspXI VCTCGAGB 1 cut(s) 582
PsuI RGATCY 2 cut(s) 115, 761
PsyI GACNNNGTC 1 cut(s) 524
RsaI GTAC 2 cut(s) 396, 551
RsaNI GTAC 2 cut(s) 395, 550
RseI CAYNNNNRTG 2 cut(s) 21, 278
SacI GAGCTC 2 cut(s) 583, 589
SaqAI TTAA 3 cut(s) 443, 594, 627
SatI GCNGC 3 cut(s) 6, 135, 456
Sau3AI GATC 5 cut(s) 109, 115, 161, 196, 761
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 5 cut(s) 28, 150, 563, 583, 589
SfaNI GCATC 2 cut(s) 366, 622
Sfr274I CTCGAG 1 cut(s) 582
SgrAI CRCCGGYG 1 cut(s) 104
SinI GGWCC 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 582
SmiMI CAYNNNNRTG 2 cut(s) 21, 278
SmlI CTYRAG 2 cut(s) 442, 582
SmoI CTYRAG 2 cut(s) 442, 582
SpeI ACTAGT 1 cut(s) 601
Sse9I AATT 1 cut(s) 59
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 2 cut(s) 102, 653
SspMI CTAG 8 cut(s) 30, 179, 206, 249, 554, 602, 749, 759
SstI GAGCTC 2 cut(s) 583, 589
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 3 cut(s) 212, 306, 565
TaiI ACGT 2 cut(s) 171, 400
TaqI TCGA 4 cut(s) 150, 174, 471, 583
TaqII GACCGA 1 cut(s) 525
TasI AATT 1 cut(s) 59
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 3 cut(s) 443, 594, 627
Tru9I TTAA 3 cut(s) 443, 594, 627
TscAI CASTG 1 cut(s) 654
TseFI GTSAC 2 cut(s) 66, 571
TseI GCWGC 3 cut(s) 5, 134, 455
Tsp45I GTSAC 2 cut(s) 66, 571
TspDTI ATGAA 3 cut(s) 76, 318, 530
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 654
Tth111I GACNNNGTC 1 cut(s) 524
Vha464I CTTAAG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 212
XagI CCTNNNNNAGG 1 cut(s) 771
XceI RCATGY 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 2 cut(s) 241, 646
XhoI CTCGAG 1 cut(s) 582
XmnI GAANNNNTTC 2 cut(s) 294, 603
XspI CTAG 8 cut(s) 30, 179, 206, 249, 554, 602, 749, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.