Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Forward (+)

2439520 .. 2441205

Gene Structure 1686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAACATCGTCAATTCAAAGATTCTCTTTTTATCATTCACGCTACTTCTTCTTCTTCAATCGTCAATCGTTGAATCCGATTCGATTTGCCTCTCTTCCGGCGTAGCTTCGACGGTGGCAATGGCGGCTCCGGGATCGGTTCAGAAAGGAGATGAAGAGTGGCGTGCGATTCTTTCACCTGAACAGTTTCGGATTCTTCGTCAAAAGGGCACTGAATATCCAGGAACAGGGGAATATGTCAACTTCGACAAGGAAGGAGTTTACGGTTGTGTAGGATGCAATGCTCCTCTTTATAAATCCACCACAAAGTTCAACGCTGGTTGTGGCTGGCCAGCTTTCTTTGAAGGAATCCCCGGTGCCATTACCCGAACGACAGACCCAGATGGGAGAAGAATAGAGATCAACTGTGCAACATGTGGTGGACATCTTGGTCATGTTTTCAAAGGAGAAGGTTTCGCTACTCCAACCGATGAACGCCATTGCGTGAACAGCGTTTCGCTTAAGTTCACACCCGCAGCGTCTTCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009987 GO:0012505 GO:0016491 GO:0016667 GO:0016671 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070191 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

176

Amino Acids

18.85

Weight (kDa)

5.91

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	58 - 171	3.4e-44	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AasI	GACNNNNNNGTC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	2 cut(s)	125, 513
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflII	CTTAAG	1 cut(s)	500
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	6 cut(s)	18, 59, 74, 313, 344, 442
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	107, 335
AluI	AGCT	2 cut(s)	107, 335
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	515
Asp700I	GAANNNNTTC	1 cut(s)	186
AsuC2I	CCSGG	2 cut(s)	132, 354
AsuHPI	GGTGA	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	222
BcnI	CCSGG	2 cut(s)	132, 354
BfrI	CTTAAG	1 cut(s)	500
BisI	GCNGC	2 cut(s)	126, 516
BlsI	GCNGC	2 cut(s)	127, 517
Bme1390I	CCNGG	3 cut(s)	132, 222, 354
BmiI	GGNNCC	2 cut(s)	129, 358
BmrFI	CCNGG	3 cut(s)	132, 222, 354
BmsI	GCATC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	513
BpuMI	CCSGG	2 cut(s)	132, 354
BsaJI	CCNNGG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse3DI	GCAATG	3 cut(s)	126, 286, 478
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	3 cut(s)	126, 286, 478
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	527
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	356
BsiSI	CCGG	3 cut(s)	99, 131, 354
BslI	CCNNNNNNNGG	1 cut(s)	227
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	134, 399
BspACI	CCGC	2 cut(s)	125, 513
BspANI	GGCC	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	129, 358
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	356
BspTI	CTTAAG	1 cut(s)	500
BsrDI	GCAATG	3 cut(s)	126, 286, 478
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	134, 399
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	4 cut(s)	115, 186, 266, 407
Bst6I	CTCTTC	2 cut(s)	100, 150
BstAFI	CTTAAG	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	165, 329, 333
BstF5I	GGATG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	137, 402
BstMBI	GATC	2 cut(s)	134, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 489
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	3 cut(s)	130, 220, 352
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	527
BstV2I	GAAGAC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	165, 329, 333
CseI	GACGC	1 cut(s)	507
CviAII	CATG	2 cut(s)	414, 434
CviJI	RGCY	5 cut(s)	107, 128, 327, 331, 335
CviKI_1	RGCY	5 cut(s)	107, 128, 327, 331, 335
DpnI	GATC	2 cut(s)	136, 401
DpnII	GATC	2 cut(s)	134, 399
DrdI	GACNNNNNNGTC	1 cut(s)	429
DseDI	GACNNNNNNGTC	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	329
Eam1104I	CTCTTC	2 cut(s)	100, 150
EarI	CTCTTC	2 cut(s)	100, 150
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	417, 437
FaiI	YATR	4 cut(s)	237, 294, 415, 435
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	2 cut(s)	413, 433
FauI	CCCGC	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	126, 516
FokI	GGATG	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	126, 516
GluI	GCNGC	2 cut(s)	126, 516
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	3 cut(s)	99, 131, 354
HgaI	GACGC	1 cut(s)	507
Hin1II	CATG	2 cut(s)	417, 437
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	6 cut(s)	22, 74, 80, 169, 193, 348
HpaII	CCGG	3 cut(s)	99, 131, 354
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	5 cut(s)	241, 262, 422, 487, 507
Hpy188I	TCNGA	3 cut(s)	79, 144, 192
Hpy8I	GTNNAC	5 cut(s)	241, 262, 422, 487, 507
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	248, 338, 443
HpyCH4III	ACNGT	4 cut(s)	115, 186, 266, 407
HpyCH4V	TGCA	2 cut(s)	279, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 489
Hsp92II	CATG	2 cut(s)	417, 437
Kzo9I	GATC	2 cut(s)	134, 399
LmnI	GCTCC	2 cut(s)	133, 289
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	1 cut(s)	266
MalI	GATC	2 cut(s)	136, 401
MboI	GATC	2 cut(s)	134, 399
MboII	GAAGA	8 cut(s)	41, 44, 47, 87, 167, 188, 402, 513
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	331
MluCI	AATT	1 cut(s)	13
MluNI	TGGCCA	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	2 cut(s)	101, 297
Mox20I	TGGCCA	1 cut(s)	331
MroXI	GAANNNNTTC	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	331
MseI	TTAA	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	331
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	3 cut(s)	99, 131, 354
MspR9I	CCNGG	3 cut(s)	132, 222, 354
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	125, 489
NciI	CCSGG	2 cut(s)	132, 354
NdeII	GATC	2 cut(s)	134, 399
NlaIII	CATG	2 cut(s)	417, 437
NlaIV	GGNNCC	2 cut(s)	129, 358
NspI	RCATGY	1 cut(s)	417
PciI	ACATGT	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 196
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	6 cut(s)	22, 74, 80, 169, 193, 348
PfoI	TCCNGGA	2 cut(s)	130, 220
PkrI	GCNGC	2 cut(s)	127, 517
PscI	ACATGT	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	129, 358
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	2 cut(s)	126, 516
Sau3AI	GATC	2 cut(s)	134, 399
ScrFI	CCNGG	3 cut(s)	132, 222, 354
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	4 cut(s)	109, 181, 337, 454
SfaNI	GCATC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	2 cut(s)	125, 513
StyD4I	CCNGG	3 cut(s)	130, 220, 352
TaaI	ACNGT	4 cut(s)	115, 186, 266, 407
TaqI	TCGA	3 cut(s)	83, 110, 246
TasI	AATT	1 cut(s)	13
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	6 cut(s)	22, 74, 80, 169, 193, 348
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	3 cut(s)	17, 168, 486
TspRI	CASTG	1 cut(s)	217
Vha464I	CTTAAG	1 cut(s)	500
XceI	RCATGY	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.