Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Reverse (-)

26579168 .. 26582813

Gene Structure 3646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG166400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGCCTGCACATTCTGAGGTCTTCCTCACCCCTTTCTTCTTCTTCCAAGACCATAATCTTCAACCCCACGACCAAACCTCCTCTAACAAACCTCCTCCTCCCCCGACCTTCAAACCCTACACCCACTACTTCTCTCTTCAAAACCCATTTCACAACTCTCTCACCAAAACCCATTACACCCGCTATTGGGTTTGGTGGGTCTTTCCAAAACACTAGGCGTAGCTTCCGTGGTGGAGTTGTTGTAGCTATGGCTGCACCTGGCCCGGTTCAGAAATCAGAGGAGGAGTGGAGAGCTGTCCTCTCTCCTGAACAGTTTCGGATTCTGAGGCAAAAAGGCACCGAGTATCCTGGCACCGGAGTATATGACAAGTTCTTTGAGGAGGGAGTCTATACCTGTGCAGGATGTGGGACTCCTCTCTACAAGTCAACAACCAAATTTAACTCTGGTTGTGGTTGGCCAGCTTTCTATGAGGGTCTTCCTGGGGCCATAAATTCTGTTGTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

169

Amino Acids

18.25

Weight (kDa)

9.67

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	101 - 164	6.1e-23	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	338, 353
AciI	CCGC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	437, 493
AfiI	CCNNNNNNNGG	3 cut(s)	188, 189, 356
AgsI	TTSAA	3 cut(s)	64, 114, 142
AjnI	CCWGG	3 cut(s)	259, 349, 481
AluBI	AGCT	4 cut(s)	225, 248, 296, 464
AluI	AGCT	4 cut(s)	225, 248, 296, 464
AoxI	GGCC	4 cut(s)	4, 262, 458, 486
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	437, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	4, 263, 486
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	21, 156
BalI	TGGCCA	1 cut(s)	460
BanI	GGYRCC	2 cut(s)	338, 353
BbsI	GAAGAC	2 cut(s)	15, 470
BbvI	GCAGC	1 cut(s)	241
BciT130I	CCWGG	3 cut(s)	261, 351, 483
BciVI	GTATCC	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	357
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	4 cut(s)	261, 266, 351, 483
BmgT120I	GGNCC	3 cut(s)	4, 263, 486
BmiI	GGNNCC	3 cut(s)	340, 355, 487
BmrFI	CCNGG	4 cut(s)	261, 266, 351, 483
BpiI	GAAGAC	2 cut(s)	15, 470
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
BpuMI	CCSGG	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	229, 482
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 228, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 189, 356
BseBI	CCWGG	3 cut(s)	261, 351, 483
BseDI	CCNNGG	2 cut(s)	229, 482
BseGI	GGATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	3 cut(s)	188, 189, 356
BseMII	CTCAG	2 cut(s)	8, 317
BseRI	GAGGAG	7 cut(s)	72, 86, 89, 296, 299, 395, 405
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	2 cut(s)	240, 420
BshFI	GGCC	4 cut(s)	6, 264, 460, 488
BshNI	GGYRCC	2 cut(s)	338, 353
BsiSI	CCGG	2 cut(s)	266, 357
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	3 cut(s)	188, 189, 356
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	4 cut(s)	6, 264, 460, 488
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	4 cut(s)	6, 264, 460, 488
BspCNI	CTCAG	2 cut(s)	9, 318
BspLI	GGNNCC	3 cut(s)	340, 355, 487
BspT107I	GGYRCC	2 cut(s)	338, 353
BssECI	CCNNGG	2 cut(s)	229, 482
Bst2UI	CCWGG	3 cut(s)	261, 351, 483
Bst4CI	ACNGT	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	8, 462
BstDEI	CTNAG	2 cut(s)	17, 326
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	410
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	3 cut(s)	261, 351, 483
BstSCI	CCNGG	4 cut(s)	259, 264, 349, 481
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	2 cut(s)	15, 470
BsuI	GTATCC	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	6, 264, 460, 488
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	410
Cac8I	GCNNGC	2 cut(s)	8, 462
Cfr13I	GGNCC	3 cut(s)	4, 263, 486
CviJI	RGCY	9 cut(s)	6, 225, 248, 254, 264, 296, 460, 464, 488
CviKI_1	RGCY	9 cut(s)	6, 225, 248, 254, 264, 296, 460, 464, 488
DdeI	CTNAG	2 cut(s)	17, 326
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	259, 349, 481
FaiI	YATR	7 cut(s)	56, 251, 364, 366, 393, 471, 491
FaqI	GGGAC	1 cut(s)	424
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	417
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	4 cut(s)	6, 264, 460, 488
HapII	CCGG	2 cut(s)	266, 357
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	3 cut(s)	322, 387, 412
HpaII	CCGG	2 cut(s)	266, 357
HphI	GGTGA	2 cut(s)	21, 156
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	5 cut(s)	18, 273, 280, 321, 327
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4V	TGCA	3 cut(s)	10, 257, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	17, 326
Lsp1109I	GCAGC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	216
MboII	GAAGA	7 cut(s)	15, 30, 33, 36, 52, 130, 470
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	2 cut(s)	437, 493
MluNI	TGGCCA	1 cut(s)	460
MlyI	GAGTC	2 cut(s)	396, 406
Mox20I	TGGCCA	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	1 cut(s)	441
Msp20I	TGGCCA	1 cut(s)	460
MspI	CCGG	2 cut(s)	266, 357
MspR9I	CCNGG	4 cut(s)	261, 266, 351, 483
MvaI	CCWGG	3 cut(s)	261, 351, 483
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	266
NlaIV	GGNNCC	3 cut(s)	340, 355, 487
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	2 cut(s)	395, 406
PpsI	GAGTC	2 cut(s)	395, 406
Psp6I	CCWGG	3 cut(s)	259, 349, 481
PspGI	CCWGG	3 cut(s)	259, 349, 481
PspN4I	GGNNCC	3 cut(s)	340, 355, 487
PspPI	GGNCC	3 cut(s)	4, 263, 486
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	255
Sau96I	GGNCC	3 cut(s)	4, 263, 486
SchI	GAGTC	2 cut(s)	396, 406
ScrFI	CCNGG	4 cut(s)	261, 266, 351, 483
Sse9I	AATT	2 cut(s)	437, 493
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	4 cut(s)	259, 264, 349, 481
TaaI	ACNGT	1 cut(s)	315
TasI	AATT	2 cut(s)	437, 493
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseI	GCWGC	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	218
XapI	RAATTY	2 cut(s)	437, 493
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.