Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Reverse (-)

26463457 .. 26466002

Gene Structure 2546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGCTTGCAGATTCTGAGGTCTTCTTCACCCCTTTCTTCTTCTTCCAAGACCATAATCTTCAACCCCACGACCAAACCTACTCTAACAAACCTCCTCCTCCTCCGACCTTCAAACCCTACACCCACTACTTCTCTCTTCAAAACCCATTTCACAACTTTCTCACCAAAACCCATCACACCCGCCATTGGGTTTGGCGGGTCTTTGCAAAACGCTAAGCGTAGCTTCCGTGGTGGAGTTGTTGTAGCTATGGCTGCACCTGGCCCGGTTCAGAAATCAGAGGAGGAGTGGAGAGCTGTCCTCTCTCCTGAACAGTTTCGGATTCTGAGGCAAAAAGGCACCGAGTATCCTGGCACCGGAGTATATGACAAGTTCTTTGAGGAGGGAGTCTATACCTGTGCAGGATGTGGGACTCCTCTCTACAAGTCGACAACCAAATTTAACTCTGGTTGTGGTTGGCCAGCTTTCTACGAGGGTCTTCCTGGGGCCATAAATTCTGTTCCGGACCGTGATGGGATGAGGGTTGAAATTACATGTGCAGCTTGCGGTGGACACCTGGGTCATGTATTTAAAGGCGAAGGTTTCCGGACACCCACAGATGAACGCCATTGTGTGAACAGTATTTCACTCAAGTTTAGTCCTGCCAATTCTAATCCTTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

221

Amino Acids

23.83

Weight (kDa)

9.2

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	101 - 214	4.4e-44	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	558
AccB1I	GGYRCC	2 cut(s)	338, 353
AccI	GTMKAC	1 cut(s)	428
AccIII	TCCGGA	2 cut(s)	502, 585
AciI	CCGC	3 cut(s)	183, 198, 546
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	437, 493
AfiI	CCNNNNNNNGG	3 cut(s)	188, 189, 356
AflIII	ACRYGT	1 cut(s)	533
AgsI	TTSAA	4 cut(s)	64, 114, 142, 527
AjnI	CCWGG	4 cut(s)	259, 349, 481, 555
AluBI	AGCT	5 cut(s)	225, 248, 296, 464, 542
AluI	AGCT	5 cut(s)	225, 248, 296, 464, 542
AlwNI	CAGNNNCTG	1 cut(s)	16
Aor13HI	TCCGGA	2 cut(s)	502, 585
AoxI	GGCC	3 cut(s)	262, 458, 486
ApeKI	GCWGC	2 cut(s)	254, 539
ApoI	RAATTY	2 cut(s)	437, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	263, 486, 505
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	21, 156
AvaII	GGWCC	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	460
BanI	GGYRCC	2 cut(s)	338, 353
BbsI	GAAGAC	2 cut(s)	15, 470
BbvI	GCAGC	2 cut(s)	241, 551
BccI	CCATC	2 cut(s)	182, 506
BciT130I	CCWGG	4 cut(s)	261, 351, 483, 557
BciVI	GTATCC	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	357
BisI	GCNGC	2 cut(s)	255, 540
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	2 cut(s)	256, 541
Bme1390I	CCNGG	5 cut(s)	261, 266, 351, 483, 557
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	3 cut(s)	263, 486, 505
BmiI	GGNNCC	3 cut(s)	340, 355, 487
BmrFI	CCNGG	5 cut(s)	261, 266, 351, 483, 557
BpiI	GAAGAC	2 cut(s)	15, 470
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	266
BsaJI	CCNNGG	3 cut(s)	229, 482, 556
BsaWI	WCCGGW	3 cut(s)	356, 502, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 189, 356
BseAI	TCCGGA	2 cut(s)	502, 585
BseBI	CCWGG	4 cut(s)	261, 351, 483, 557
BseDI	CCNNGG	3 cut(s)	229, 482, 556
BseGI	GGATG	2 cut(s)	410, 522
BseLI	CCNNNNNNNGG	3 cut(s)	188, 189, 356
BseMII	CTCAG	3 cut(s)	8, 317, 651
BseRI	GAGGAG	7 cut(s)	86, 89, 92, 296, 299, 395, 405
BseXI	GCAGC	2 cut(s)	241, 551
BsgI	GTGCAG	3 cut(s)	240, 420, 558
BshFI	GGCC	3 cut(s)	264, 460, 488
BshNI	GGYRCC	2 cut(s)	338, 353
BsiSI	CCGG	4 cut(s)	266, 357, 503, 586
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	3 cut(s)	188, 189, 356
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	3 cut(s)	264, 460, 488
Bsp13I	TCCGGA	2 cut(s)	502, 585
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	3 cut(s)	183, 198, 546
BspANI	GGCC	3 cut(s)	264, 460, 488
BspCNI	CTCAG	3 cut(s)	9, 318, 652
BspEI	TCCGGA	2 cut(s)	502, 585
BspLI	GGNNCC	3 cut(s)	340, 355, 487
BspT107I	GGYRCC	2 cut(s)	338, 353
BssECI	CCNNGG	3 cut(s)	229, 482, 556
Bst2UI	CCWGG	4 cut(s)	261, 351, 483, 557
Bst4CI	ACNGT	3 cut(s)	315, 509, 620
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	8, 462, 544
BstDEI	CTNAG	4 cut(s)	17, 216, 326, 660
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	410, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	4 cut(s)	261, 351, 483, 557
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	5 cut(s)	259, 264, 349, 481, 555
BstV1I	GCAGC	2 cut(s)	241, 551
BstV2I	GAAGAC	2 cut(s)	15, 470
BsuI	GTATCC	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	264, 460, 488
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	410, 522
Cac8I	GCNNGC	3 cut(s)	8, 462, 544
CaiI	CAGNNNCTG	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	263, 486, 505
CpoI	CGGWCCG	1 cut(s)	505
CspI	CGGWCCG	1 cut(s)	505
CviAII	CATG	2 cut(s)	534, 563
DdeI	CTNAG	4 cut(s)	17, 216, 326, 660
DraI	TTTAAA	1 cut(s)	571
DrdI	GACNNNNNNGTC	1 cut(s)	558
DseDI	GACNNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	505
EcoRII	CCWGG	4 cut(s)	259, 349, 481, 555
FaeI	CATG	2 cut(s)	537, 566
FaiI	YATR	8 cut(s)	56, 251, 364, 366, 393, 491, 535, 564
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	2 cut(s)	533, 562
FauI	CCCGC	2 cut(s)	190, 191
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	2 cut(s)	255, 540
FokI	GGATG	2 cut(s)	417, 529
Fsp4HI	GCNGC	2 cut(s)	255, 540
GluI	GCNGC	2 cut(s)	255, 540
HaeIII	GGCC	3 cut(s)	264, 460, 488
HapII	CCGG	4 cut(s)	266, 357, 503, 586
Hin1II	CATG	2 cut(s)	537, 566
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	4 cut(s)	13, 322, 387, 412
HpaII	CCGG	4 cut(s)	266, 357, 503, 586
HphI	GGTGA	2 cut(s)	21, 156
Hpy166II	GTNNAC	3 cut(s)	429, 551, 616
Hpy188I	TCNGA	7 cut(s)	18, 107, 273, 280, 321, 327, 661
Hpy188III	TCNNGA	3 cut(s)	308, 503, 586
Hpy8I	GTNNAC	3 cut(s)	429, 551, 616
HpyAV	CCTTC	3 cut(s)	120, 572, 666
HpyCH4III	ACNGT	3 cut(s)	315, 509, 620
HpyCH4V	TGCA	5 cut(s)	10, 208, 257, 401, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	4 cut(s)	17, 216, 326, 660
Hsp92II	CATG	2 cut(s)	537, 566
Kpn2I	TCCGGA	2 cut(s)	502, 585
Lsp1109I	GCAGC	2 cut(s)	241, 551
MboII	GAAGA	8 cut(s)	15, 18, 30, 33, 36, 52, 130, 470
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	4 cut(s)	437, 493, 528, 646
MluNI	TGGCCA	1 cut(s)	460
MlyI	GAGTC	2 cut(s)	396, 406
MmeI	TCCRAC	1 cut(s)	130
Mox20I	TGGCCA	1 cut(s)	460
MroI	TCCGGA	2 cut(s)	502, 585
MroXI	GAANNNNTTC	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	2 cut(s)	441, 570
Msp20I	TGGCCA	1 cut(s)	460
MspI	CCGG	4 cut(s)	266, 357, 503, 586
MspR9I	CCNGG	5 cut(s)	261, 266, 351, 483, 557
MvaI	CCWGG	4 cut(s)	261, 351, 483, 557
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	266
NlaIII	CATG	2 cut(s)	537, 566
NlaIV	GGNNCC	3 cut(s)	340, 355, 487
NspI	RCATGY	1 cut(s)	537
PciI	ACATGT	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	13, 322
PkrI	GCNGC	2 cut(s)	256, 541
PleI	GAGTC	2 cut(s)	395, 406
PpsI	GAGTC	2 cut(s)	395, 406
PscI	ACATGT	1 cut(s)	533
Psp6I	CCWGG	4 cut(s)	259, 349, 481, 555
PspGI	CCWGG	4 cut(s)	259, 349, 481, 555
PspN4I	GGNNCC	3 cut(s)	340, 355, 487
PspPI	GGNCC	3 cut(s)	263, 486, 505
PstNI	CAGNNNCTG	1 cut(s)	16
Rsr2I	CGGWCCG	1 cut(s)	505
RsrII	CGGWCCG	1 cut(s)	505
SalI	GTCGAC	1 cut(s)	427
SaqAI	TTAA	2 cut(s)	441, 570
SatI	GCNGC	2 cut(s)	255, 540
Sau96I	GGNCC	3 cut(s)	263, 486, 505
SchI	GAGTC	2 cut(s)	396, 406
ScrFI	CCNGG	5 cut(s)	261, 266, 351, 483, 557
SinI	GGWCC	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	4 cut(s)	437, 493, 528, 646
SsiI	CCGC	3 cut(s)	183, 198, 546
StyD4I	CCNGG	5 cut(s)	259, 264, 349, 481, 555
TaaI	ACNGT	3 cut(s)	315, 509, 620
TaqI	TCGA	1 cut(s)	428
TasI	AATT	4 cut(s)	437, 493, 528, 646
TfiI	GAWTC	2 cut(s)	13, 322
Tru1I	TTAA	2 cut(s)	441, 570
Tru9I	TTAA	2 cut(s)	441, 570
TseI	GCWGC	2 cut(s)	254, 539
TspDTI	ATGAA	1 cut(s)	615
TspGWI	ACGGA	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	2 cut(s)	437, 493
XceI	RCATGY	1 cut(s)	537
XmiI	GTMKAC	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.