Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Reverse (-)

11599645 .. 11601724

Gene Structure 2080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGTTCAATATCATAACACCTGGTCGTGTTTATTCAGCCACGTCTCTCACTTTCGTTTCCACCATTAAAGCTGCTTTCGTTAAACCTCCTTTGGCCTCTCCGTCTCGTCGTAACCTCCTTCGTTTCTCATCATCTCCTTTGTCATTTCCGTCGCTCCGTCGAGGTTTCCACGGTGGTCGTATTGTGGCAATGGGTTCTTCTGCTCCTGAATCGGTCAATAAGCCGGAAGAAGAGTGGCGTGCGATTCTTTCTCCTGAACAATTTAGGATTCTCAGACAGAAAGGCACTGAATATCCAGGAACTGGAGAATACAACAAAGTATTCGACGATGGCATCTATTGTTGTGCAGGATGTGGAACTCCTCTCTACAAATCCACCACCAAATTCGACTCTGGTTGTGGCTGGCCAGCTTTCTTTGATGGACTCCCCGGAGCTATAACCCGAACCCCTGATCCAGATGGGAGACGAATCGAGATCACATGTGCTGCTTGTGGAGGACATCTTGGTCACGTTTTTAAAGGAGAAGGTTTCCCTACTCCTACCGATGAGCGACACTGTGTAAACAGTATCTCTCTCAAGTTCACACCAGAGAATCCGACCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007584 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009991 GO:0010035 GO:0016491 GO:0016667 GO:0016671 GO:0031667 GO:0033743 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

202

Amino Acids

21.97

Weight (kDa)

8.88

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	84 - 197	1.5e-44	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	507
AccB7I	CCANNNNNTGG	1 cut(s)	305
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	407
AcsI	RAATTY	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	482
AgsI	TTSAA	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	2 cut(s)	22, 298
AloI	GAACNNNNNNTCC	2 cut(s)	439, 471
AluBI	AGCT	3 cut(s)	74, 413, 437
AluI	AGCT	3 cut(s)	74, 413, 437
Alw26I	GTCTC	3 cut(s)	51, 111, 460
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	2 cut(s)	96, 407
ApeKI	GCWGC	2 cut(s)	74, 488
ApoI	RAATTY	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	61, 475
BccI	CCATC	3 cut(s)	326, 416, 455
BciT130I	CCWGG	2 cut(s)	24, 300
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	3 cut(s)	51, 111, 460
BisI	GCNGC	2 cut(s)	75, 489
BlsI	GCNGC	2 cut(s)	76, 490
Bme1390I	CCNGG	3 cut(s)	24, 300, 432
BmgBI	CACGTC	1 cut(s)	45
BmrFI	CCNGG	3 cut(s)	24, 300, 432
BmsI	GCATC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	172, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	24, 300
BseDI	CCNNGG	2 cut(s)	172, 430
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	61, 475
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	98, 409
BsiSI	CCGG	2 cut(s)	227, 432
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	3 cut(s)	51, 111, 460
BsmBI	CGTCTC	3 cut(s)	51, 111, 460
BsnI	GGCC	2 cut(s)	98, 409
Bsp143I	GATC	2 cut(s)	454, 477
BspANI	GGCC	2 cut(s)	98, 409
BspCNI	CTCAG	1 cut(s)	288
BspPI	GGATC	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	172, 430
BssMI	GATC	2 cut(s)	454, 477
Bst2UI	CCWGG	2 cut(s)	24, 300
Bst4CI	ACNGT	3 cut(s)	176, 560, 569
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	243, 407, 411
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	359
BstKTI	GATC	2 cut(s)	457, 480
BstMAI	GTCTC	3 cut(s)	51, 111, 460
BstMBI	GATC	2 cut(s)	454, 477
BstNI	CCWGG	2 cut(s)	24, 300
BstNSI	RCATGY	1 cut(s)	486
BstSCI	CCNGG	3 cut(s)	22, 298, 430
BstV1I	GCAGC	2 cut(s)	61, 475
BsuRI	GGCC	2 cut(s)	98, 409
BtgI	CCRYGG	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	288, 556
Cac8I	GCNNGC	3 cut(s)	243, 407, 411
CaiI	CAGNNNCTG	1 cut(s)	305
CsiI	ACCWGGT	1 cut(s)	22
CviAII	CATG	1 cut(s)	483
CviJI	RGCY	8 cut(s)	41, 74, 98, 226, 405, 409, 413, 437
CviKI_1	RGCY	8 cut(s)	41, 74, 98, 226, 405, 409, 413, 437
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	2 cut(s)	456, 479
DpnII	GATC	2 cut(s)	454, 477
DraI	TTTAAA	1 cut(s)	520
DrdI	GACNNNNNNGTC	1 cut(s)	507
DseDI	GACNNNNNNGTC	1 cut(s)	507
EaeI	YGGCCR	1 cut(s)	407
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	22, 298
Esp3I	CGTCTC	3 cut(s)	51, 111, 460
FaeI	CATG	1 cut(s)	486
FaiI	YATR	3 cut(s)	17, 440, 484
FatI	CATG	1 cut(s)	482
Fnu4HI	GCNGC	2 cut(s)	75, 489
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	75, 489
GluI	GCNGC	2 cut(s)	75, 489
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	98, 409
HapII	CCGG	2 cut(s)	227, 432
Hin1II	CATG	1 cut(s)	486
HinfI	GANTC	7 cut(s)	212, 247, 271, 392, 426, 471, 595
HpaII	CCGG	2 cut(s)	227, 432
Hpy166II	GTNNAC	2 cut(s)	565, 585
Hpy188I	TCNGA	2 cut(s)	278, 600
Hpy188III	TCNNGA	4 cut(s)	209, 257, 458, 475
Hpy8I	GTNNAC	2 cut(s)	565, 585
Hpy99I	CGWCG	4 cut(s)	114, 157, 165, 332
HpyAV	CCTTC	2 cut(s)	131, 521
HpyCH4III	ACNGT	3 cut(s)	176, 560, 569
HpyCH4IV	ACGT	2 cut(s)	44, 513
HpyCH4V	TGCA	1 cut(s)	350
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	2 cut(s)	44, 513
Hsp92II	CATG	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	454, 477
LmnI	GCTCC	3 cut(s)	162, 211, 434
Lsp1109I	GCAGC	2 cut(s)	61, 475
LweI	GCATC	1 cut(s)	345
MabI	ACCWGGT	1 cut(s)	22
MaeII	ACGT	2 cut(s)	44, 513
MaeIII	GTNAC	2 cut(s)	113, 509
MalI	GATC	2 cut(s)	456, 479
MboI	GATC	2 cut(s)	454, 477
MboII	GAAGA	3 cut(s)	192, 242, 245
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	2 cut(s)	263, 386
MluNI	TGGCCA	1 cut(s)	409
MlyI	GAGTC	2 cut(s)	386, 420
MnlI	CCTC	6 cut(s)	99, 109, 128, 158, 375, 491
Mox20I	TGGCCA	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	3 cut(s)	69, 84, 519
Msp20I	TGGCCA	1 cut(s)	409
MspI	CCGG	2 cut(s)	227, 432
MspR9I	CCNGG	3 cut(s)	24, 300, 432
MvaI	CCWGG	2 cut(s)	24, 300
NciI	CCSGG	1 cut(s)	432
NdeII	GATC	2 cut(s)	454, 477
NlaIII	CATG	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	1 cut(s)	486
PciI	ACATGT	1 cut(s)	482
PfeI	GAWTC	5 cut(s)	212, 247, 271, 471, 595
PflMI	CCANNNNNTGG	1 cut(s)	305
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	76, 490
PleI	GAGTC	2 cut(s)	386, 420
PpsI	GAGTC	2 cut(s)	386, 420
PscI	ACATGT	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	22, 298
PspGI	CCWGG	2 cut(s)	22, 298
PstNI	CAGNNNCTG	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	69, 84, 519
SatI	GCNGC	2 cut(s)	75, 489
Sau3AI	GATC	2 cut(s)	454, 477
SchI	GAGTC	2 cut(s)	386, 420
ScrFI	CCNGG	3 cut(s)	24, 300, 432
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	2 cut(s)	263, 386
StyD4I	CCNGG	3 cut(s)	22, 298, 430
TaaI	ACNGT	3 cut(s)	176, 560, 569
TaiI	ACGT	2 cut(s)	47, 516
TaqI	TCGA	4 cut(s)	163, 327, 390, 474
TaqII	GACCGA	1 cut(s)	205
TasI	AATT	2 cut(s)	263, 386
TfiI	GAWTC	5 cut(s)	212, 247, 271, 471, 595
Tru1I	TTAA	3 cut(s)	69, 84, 519
Tru9I	TTAA	3 cut(s)	69, 84, 519
TscAI	CASTG	2 cut(s)	295, 563
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	2 cut(s)	74, 488
Tsp45I	GTSAC	1 cut(s)	509
TspGWI	ACGGA	3 cut(s)	93, 141, 149
TspRI	CASTG	2 cut(s)	295, 563
Van91I	CCANNNNNTGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.