Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019533.1

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1501

Gene Structure 1501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019533.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 298 bp

atgcattggcaatctagattaacgtatcctggcaccggagtatatgacaagttctttgaggagggagtctatacctgtgcaggatgtgggactcctctctacaagtcaacaaccaaatttaactctggttgtggttggccagctttctatgagggtcttcctggggccataaattctgttccggaccgcgatgggatgagggttgaaattacatgtgcggcttgtggtggacacctgggtcatgtattcaaaggtgaaggtttccggacacccacagatgaacgccattgtgtgaaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

99

Amino Acids

10.84

Weight (kDa)

6.39

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	32
AccII	CGCG	1 cut(s)	189
AccIII	TCCGGA	2 cut(s)	181, 264
AciI	CCGC	2 cut(s)	187, 218
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	116, 172
AfiI	CCNNNNNNNGG	1 cut(s)	35
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	206, 250
AjnI	CCWGG	3 cut(s)	28, 160, 234
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Aor13HI	TCCGGA	2 cut(s)	181, 264
AoxI	GGCC	2 cut(s)	137, 165
ApoI	RAATTY	2 cut(s)	116, 172
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspS9I	GGNCC	2 cut(s)	165, 184
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	149
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	3 cut(s)	30, 162, 236
BciVI	GTATCC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	36
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	3 cut(s)	30, 162, 236
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	165, 184
BmiI	GGNNCC	2 cut(s)	34, 166
BmrFI	CCNGG	3 cut(s)	30, 162, 236
BpiI	GAAGAC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	161, 235
BsaWI	WCCGGW	3 cut(s)	35, 181, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
BseAI	TCCGGA	2 cut(s)	181, 264
BseBI	CCWGG	3 cut(s)	30, 162, 236
BseDI	CCNNGG	2 cut(s)	161, 235
BseGI	GGATG	2 cut(s)	89, 201
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseRI	GAGGAG	2 cut(s)	74, 84
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	139, 167
BshNI	GGYRCC	1 cut(s)	32
BsiSI	CCGG	3 cut(s)	36, 182, 265
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	139, 167
Bsp13I	TCCGGA	2 cut(s)	181, 264
BspACI	CCGC	2 cut(s)	187, 218
BspANI	GGCC	2 cut(s)	139, 167
BspEI	TCCGGA	2 cut(s)	181, 264
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	34, 166
BspT107I	GGYRCC	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	161, 235
Bst2UI	CCWGG	3 cut(s)	30, 162, 236
BstC8I	GCNNGC	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	89, 201
BstFNI	CGCG	1 cut(s)	189
BstNI	CCWGG	3 cut(s)	30, 162, 236
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	3 cut(s)	28, 160, 234
BstUI	CGCG	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	139, 167
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	89, 201
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	165, 184
CpoI	CGGWCCG	1 cut(s)	184
CspI	CGGWCCG	1 cut(s)	184
CviAII	CATG	2 cut(s)	213, 242
CviJI	RGCY	4 cut(s)	139, 143, 167, 221
CviKI_1	RGCY	4 cut(s)	139, 143, 167, 221
DrdI	GACNNNNNNGTC	1 cut(s)	237
DseDI	GACNNNNNNGTC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	184
EcoRII	CCWGG	3 cut(s)	28, 160, 234
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	216, 245
FaiI	YATR	7 cut(s)	43, 45, 72, 150, 170, 214, 243
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	212, 241
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	2 cut(s)	96, 208
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	139, 167
HapII	CCGG	3 cut(s)	36, 182, 265
Hin1II	CATG	2 cut(s)	216, 245
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	66, 91
HpaII	CCGG	3 cut(s)	36, 182, 265
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	3 cut(s)	108, 230, 295
Hpy188III	TCNNGA	3 cut(s)	15, 182, 265
Hpy8I	GTNNAC	3 cut(s)	108, 230, 295
HpyAV	CCTTC	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	4, 80
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	216, 245
Kpn2I	TCCGGA	2 cut(s)	181, 264
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	23
MboII	GAAGA	1 cut(s)	149
MlsI	TGGCCA	1 cut(s)	139
MluCI	AATT	3 cut(s)	116, 172, 207
MluNI	TGGCCA	1 cut(s)	139
MlyI	GAGTC	2 cut(s)	75, 85
MnlI	CCTC	5 cut(s)	52, 55, 105, 145, 192
Mox20I	TGGCCA	1 cut(s)	139
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	2 cut(s)	181, 264
MscI	TGGCCA	1 cut(s)	139
MseI	TTAA	2 cut(s)	20, 120
Msp20I	TGGCCA	1 cut(s)	139
MspI	CCGG	3 cut(s)	36, 182, 265
MspR9I	CCNGG	3 cut(s)	30, 162, 236
MvaI	CCWGG	3 cut(s)	30, 162, 236
MvnI	CGCG	1 cut(s)	189
NlaIII	CATG	2 cut(s)	216, 245
NlaIV	GGNNCC	2 cut(s)	34, 166
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	216
PciI	ACATGT	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	2 cut(s)	74, 85
PpsI	GAGTC	2 cut(s)	74, 85
PscI	ACATGT	1 cut(s)	212
Psp6I	CCWGG	3 cut(s)	28, 160, 234
PspGI	CCWGG	3 cut(s)	28, 160, 234
PspN4I	GGNNCC	2 cut(s)	34, 166
PspPI	GGNCC	2 cut(s)	165, 184
Rsr2I	CGGWCCG	1 cut(s)	184
RsrII	CGGWCCG	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	20, 120
SatI	GCNGC	1 cut(s)	219
Sau96I	GGNCC	2 cut(s)	165, 184
SchI	GAGTC	2 cut(s)	75, 85
ScrFI	CCNGG	3 cut(s)	30, 162, 236
SetI	ASST	6 cut(s)	26, 77, 145, 237, 256, 262
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	3 cut(s)	116, 172, 207
SsiI	CCGC	2 cut(s)	187, 218
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	3 cut(s)	28, 160, 234
TaiI	ACGT	1 cut(s)	26
TasI	AATT	3 cut(s)	116, 172, 207
TauI	GCSGC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	20, 120
Tru9I	TTAA	2 cut(s)	20, 120
TspDTI	ATGAA	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	116, 172
XbaI	TCTAGA	1 cut(s)	14
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.