Rh6BG172000

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006023
Physical Location & Seq
Reverse (-)
28401515 .. 28403737
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG172000.1

Sequence Viewer

Length: 663 bp
ATGGGCTTGCAGATTCTGAGGTCCTCTTCACCCCTTTCTTCTTCTTCCAAGACCATACTCTTCAACCCCACGACCAAACCTGCTCTAACAAACCTCCTTCTCCTCCGACCTTCAAACCCTACACCCACTTCTCTCTTCAAAACCCATTTCACAACTTTCTCACCAAAACCCATCACACCCGCCATTGGGTTTGGCGGGTCTTTGCAAAACGCTAAGCGTAGCTTCCGTGGTGGAGTTGTTGTAGCTATGGCTGCACCTGGCCCGGTTCAGAAATCAGAGGAGGAGTGGAGAGCTGTCCTCTCTCCTGAACAGTTTCGGATTCTGAGGCAAAAAGGCACCGAGTATCCTGGCACTGGAGTATATGACAAGTTCTTTGAGGAGGGAGTCTATACCTGTGCAGGATGTGGGACTCCTCTCTACAAGTCCACAACCAAATTTAACTCTGGTTGTGGTTGGCCAGCTTTCTATGAGGGTCTTCCTGGGGCCATAAATTCTGTTCCGGACCGCGATGGGATGAGGGTTGAAATTACATGTGCAGCTTGCGGTGGACACCTGGGTCATGTATTTAAAGGTGAAGGTTTCCGGACACCCACAGATGAACGCCATTGTGTGAACAGTATTTCACTCAAGTTTAGTCCTGCCAATTCTAATCCTTCTGAGTGA

Protein Analysis

220

Amino Acids

23.7

Weight (kDa)

9.2

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 100 - 213 4.4e-44 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 555
Acc36I ACCTGC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 335
AccII CGCG 1 cut(s) 507
AccIII TCCGGA 2 cut(s) 499, 582
AciI CCGC 4 cut(s) 180, 195, 505, 543
AcoI YGGCCR 1 cut(s) 455
AcsI RAATTY 2 cut(s) 434, 490
AfiI CCNNNNNNNGG 3 cut(s) 185, 186, 353
AflIII ACRYGT 1 cut(s) 530
AgsI TTSAA 4 cut(s) 64, 114, 139, 524
AjnI CCWGG 4 cut(s) 256, 346, 478, 552
AluBI AGCT 5 cut(s) 222, 245, 293, 461, 539
AluI AGCT 5 cut(s) 222, 245, 293, 461, 539
AlwNI CAGNNNCTG 1 cut(s) 16
Aor13HI TCCGGA 2 cut(s) 499, 582
AoxI GGCC 3 cut(s) 259, 455, 483
ApeKI GCWGC 2 cut(s) 251, 536
ApoI RAATTY 2 cut(s) 434, 490
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 4 cut(s) 21, 260, 483, 502
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 3 cut(s) 21, 153, 584
AvaII GGWCC 2 cut(s) 21, 502
BalI TGGCCA 1 cut(s) 457
BanI GGYRCC 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 467
BbvI GCAGC 2 cut(s) 238, 548
BccI CCATC 2 cut(s) 179, 503
BciT130I CCWGG 4 cut(s) 258, 348, 480, 554
BciVI GTATCC 1 cut(s) 354
BcnI CCSGG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 354
BisI GCNGC 2 cut(s) 252, 537
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 2 cut(s) 253, 538
Bme1390I CCNGG 5 cut(s) 258, 263, 348, 480, 554
Bme18I GGWCC 2 cut(s) 21, 502
BmgT120I GGNCC 4 cut(s) 21, 260, 483, 502
BmiI GGNNCC 2 cut(s) 337, 484
BmrFI CCNGG 5 cut(s) 258, 263, 348, 480, 554
BpiI GAAGAC 1 cut(s) 467
BplI GAGNNNNNCTC 2 cut(s) 282, 314
BpmI CTGGAG 1 cut(s) 375
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 611
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 226, 479, 553
BsaWI WCCGGW 2 cut(s) 499, 582
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 186, 353
Bse1I ACTGG 1 cut(s) 358
BseAI TCCGGA 2 cut(s) 499, 582
BseBI CCWGG 4 cut(s) 258, 348, 480, 554
BseDI CCNNGG 3 cut(s) 226, 479, 553
BseGI GGATG 2 cut(s) 407, 519
BseLI CCNNNNNNNGG 3 cut(s) 185, 186, 353
BseMII CTCAG 3 cut(s) 8, 314, 648
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 5 cut(s) 92, 293, 296, 392, 402
BseXI GCAGC 2 cut(s) 238, 548
BsgI GTGCAG 3 cut(s) 237, 417, 555
Bsh1236I CGCG 1 cut(s) 507
BshFI GGCC 3 cut(s) 261, 457, 485
BshNI GGYRCC 1 cut(s) 335
BsiSI CCGG 3 cut(s) 263, 500, 583
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 3 cut(s) 185, 186, 353
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 3 cut(s) 261, 457, 485
Bsp13I TCCGGA 2 cut(s) 499, 582
Bsp1720I GCTNAGC 1 cut(s) 213
BspACI CCGC 4 cut(s) 180, 195, 505, 543
BspANI GGCC 3 cut(s) 261, 457, 485
BspCNI CTCAG 3 cut(s) 9, 315, 649
BspEI TCCGGA 2 cut(s) 499, 582
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 2 cut(s) 337, 484
BspMI ACCTGC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 3 cut(s) 226, 479, 553
Bst2UI CCWGG 4 cut(s) 258, 348, 480, 554
Bst4CI ACNGT 2 cut(s) 312, 617
Bst6I CTCTTC 3 cut(s) 31, 65, 140
BstC8I GCNNGC 3 cut(s) 8, 459, 541
BstDEI CTNAG 4 cut(s) 17, 213, 323, 657
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 2 cut(s) 407, 519
BstFNI CGCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 4 cut(s) 258, 348, 480, 554
BstNSI RCATGY 1 cut(s) 534
BstSCI CCNGG 5 cut(s) 256, 261, 346, 478, 552
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 2 cut(s) 238, 548
BstV2I GAAGAC 1 cut(s) 467
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 3 cut(s) 261, 457, 485
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 522
BtsCI GGATG 2 cut(s) 407, 519
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 3 cut(s) 8, 459, 541
CaiI CAGNNNCTG 1 cut(s) 16
Cfr13I GGNCC 4 cut(s) 21, 260, 483, 502
CpoI CGGWCCG 1 cut(s) 502
CspI CGGWCCG 1 cut(s) 502
CviAII CATG 2 cut(s) 531, 560
DdeI CTNAG 4 cut(s) 17, 213, 323, 657
DraI TTTAAA 1 cut(s) 568
DrdI GACNNNNNNGTC 1 cut(s) 555
DseDI GACNNNNNNGTC 1 cut(s) 555
EaeI YGGCCR 1 cut(s) 455
Eam1104I CTCTTC 3 cut(s) 31, 65, 140
EarI CTCTTC 3 cut(s) 31, 65, 140
Eco47I GGWCC 2 cut(s) 21, 502
EcoO109I RGGNCCY 1 cut(s) 21
EcoRII CCWGG 4 cut(s) 256, 346, 478, 552
FaeI CATG 2 cut(s) 534, 563
FaiI YATR 9 cut(s) 56, 248, 361, 363, 390, 468, 488, 532, 561
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 1 cut(s) 421
FatI CATG 2 cut(s) 530, 559
FauI CCCGC 2 cut(s) 187, 188
Fnu4HI GCNGC 2 cut(s) 252, 537
FokI GGATG 2 cut(s) 414, 526
Fsp4HI GCNGC 2 cut(s) 252, 537
GluI GCNGC 2 cut(s) 252, 537
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 3 cut(s) 261, 457, 485
HapII CCGG 3 cut(s) 263, 500, 583
Hin1II CATG 2 cut(s) 534, 563
HinfI GANTC 4 cut(s) 13, 319, 384, 409
HpaII CCGG 3 cut(s) 263, 500, 583
HphI GGTGA 3 cut(s) 21, 153, 584
Hpy166II GTNNAC 3 cut(s) 426, 548, 613
Hpy188I TCNGA 7 cut(s) 18, 107, 270, 277, 318, 324, 658
Hpy188III TCNNGA 3 cut(s) 305, 500, 583
Hpy8I GTNNAC 3 cut(s) 426, 548, 613
HpyAV CCTTC 4 cut(s) 107, 120, 569, 663
HpyCH4III ACNGT 2 cut(s) 312, 617
HpyCH4V TGCA 5 cut(s) 10, 205, 254, 398, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 4 cut(s) 17, 213, 323, 657
Hsp92II CATG 2 cut(s) 534, 563
Kpn2I TCCGGA 2 cut(s) 499, 582
Lsp1109I GCAGC 2 cut(s) 238, 548
MboII GAAGA 7 cut(s) 18, 30, 33, 36, 52, 127, 467
MlsI TGGCCA 1 cut(s) 457
MluCI AATT 4 cut(s) 434, 490, 525, 643
MluNI TGGCCA 1 cut(s) 457
MlyI GAGTC 2 cut(s) 393, 403
MmeI TCCRAC 1 cut(s) 130
Mox20I TGGCCA 1 cut(s) 457
MroI TCCGGA 2 cut(s) 499, 582
MroXI GAANNNNTTC 1 cut(s) 312
MscI TGGCCA 1 cut(s) 457
MseI TTAA 2 cut(s) 438, 567
Msp20I TGGCCA 1 cut(s) 457
MspI CCGG 3 cut(s) 263, 500, 583
MspR9I CCNGG 5 cut(s) 258, 263, 348, 480, 554
MvaI CCWGG 4 cut(s) 258, 348, 480, 554
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 263
NlaIII CATG 2 cut(s) 534, 563
NlaIV GGNNCC 2 cut(s) 337, 484
NspI RCATGY 1 cut(s) 534
PciI ACATGT 1 cut(s) 530
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 13, 319
PkrI GCNGC 2 cut(s) 253, 538
PleI GAGTC 2 cut(s) 392, 403
PpsI GAGTC 2 cut(s) 392, 403
PpuMI RGGWCCY 1 cut(s) 21
PscI ACATGT 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 4 cut(s) 256, 346, 478, 552
PspGI CCWGG 4 cut(s) 256, 346, 478, 552
PspN4I GGNNCC 2 cut(s) 337, 484
PspPI GGNCC 4 cut(s) 21, 260, 483, 502
PspPPI RGGWCCY 1 cut(s) 21
PstNI CAGNNNCTG 1 cut(s) 16
Rsr2I CGGWCCG 1 cut(s) 502
RsrII CGGWCCG 1 cut(s) 502
SaqAI TTAA 2 cut(s) 438, 567
SatI GCNGC 2 cut(s) 252, 537
Sau96I GGNCC 4 cut(s) 21, 260, 483, 502
SchI GAGTC 2 cut(s) 393, 403
ScrFI CCNGG 5 cut(s) 258, 263, 348, 480, 554
SinI GGWCC 2 cut(s) 21, 502
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 4 cut(s) 434, 490, 525, 643
SsiI CCGC 4 cut(s) 180, 195, 505, 543
StyD4I CCNGG 5 cut(s) 256, 261, 346, 478, 552
TaaI ACNGT 2 cut(s) 312, 617
TasI AATT 4 cut(s) 434, 490, 525, 643
TfiI GAWTC 2 cut(s) 13, 319
Tru1I TTAA 2 cut(s) 438, 567
Tru9I TTAA 2 cut(s) 438, 567
TscAI CASTG 1 cut(s) 358
TseI GCWGC 2 cut(s) 251, 536
TspDTI ATGAA 1 cut(s) 612
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 358
VpaK11BI GGWCC 2 cut(s) 21, 502
XapI RAATTY 2 cut(s) 434, 490
XceI RCATGY 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.