Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Reverse (-)

11584346 .. 11585542

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCAGCAATGACCGCGGCAGCAGTTCCAGCAACTGGATCTTTCCAGAAACAAGACGAGGAGTGGCGTGCGGTTCTGTCTCCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGCACAGATAAACGAGGCAAAGGAGAGTTTACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACTGCTCTTTATAAATCGACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGACGCCATCCCCGGTGCTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACATGTGCAGTGTGTGATGGACATTTAGGCCATGTTTTCAAAGGCGAAGGTTACTCTACTCCAACCGATCAACGTCACTGCGTTAACAGTGTCTCTCTCAAATTCTCTTCTGCTGGTTCCTCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007584 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009991 GO:0010035 GO:0016491 GO:0016667 GO:0016671 GO:0031667 GO:0033743 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

144

Amino Acids

15.46

Weight (kDa)

8.55

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	26 - 138	7.2e-43	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	35
AccII	CGCG	1 cut(s)	17
AciI	CCGC	4 cut(s)	15, 17, 71, 228
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	35, 284
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	346
Alw26I	GTCTC	2 cut(s)	84, 403
AlwI	GGATC	1 cut(s)	46
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	2 cut(s)	233, 334
ApeKI	GCWGC	2 cut(s)	5, 20
ApoI	RAATTY	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	17, 32
BccI	CCATC	2 cut(s)	260, 317
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	84, 403
BfuAI	ACCTGC	1 cut(s)	275
BisI	GCNGC	3 cut(s)	6, 18, 21
BlsI	GCNGC	3 cut(s)	7, 19, 22
Bme1390I	CCNGG	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	15, 256
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 284
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	15, 256
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	35, 284
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	75, 115
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	17, 32
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	235, 336
BsiSI	CCGG	2 cut(s)	222, 258
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	35, 284
BsmAI	GTCTC	2 cut(s)	84, 403
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	235, 336
Bsp143I	GATC	2 cut(s)	38, 373
BspACI	CCGC	4 cut(s)	15, 17, 71, 228
BspANI	GGCC	2 cut(s)	235, 336
BspCNI	CTCAG	2 cut(s)	76, 114
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	15, 256
BssMI	GATC	2 cut(s)	38, 373
BssNI	GRCGYC	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	418
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	69, 237
BstDEI	CTNAG	3 cut(s)	84, 101, 210
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	41, 376
BstMAI	GTCTC	2 cut(s)	84, 403
BstMBI	GATC	2 cut(s)	38, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 29
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	256
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	17, 32
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	235, 336
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	252
BtsI	GCAGTG	2 cut(s)	321, 382
BtsIMutI	CAGTG	3 cut(s)	321, 382, 400
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	69, 237
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr42I	CCGCGG	1 cut(s)	18
CseI	GACGC	1 cut(s)	257
CviAII	CATG	2 cut(s)	309, 338
CviJI	RGCY	2 cut(s)	235, 336
CviKI_1	RGCY	2 cut(s)	235, 336
DdeI	CTNAG	3 cut(s)	84, 101, 210
DpnI	GATC	2 cut(s)	40, 375
DpnII	GATC	2 cut(s)	38, 373
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
FaeI	CATG	2 cut(s)	312, 341
FaiI	YATR	4 cut(s)	168, 198, 310, 339
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	308, 337
Fnu4HI	GCNGC	3 cut(s)	6, 18, 21
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	6, 18, 21
GluI	GCNGC	3 cut(s)	6, 18, 21
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	235, 336
HapII	CCGG	2 cut(s)	222, 258
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	312, 341
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	1 cut(s)	218
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	2 cut(s)	222, 258
Hpy166II	GTNNAC	2 cut(s)	141, 391
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	3 cut(s)	46, 83, 278
Hpy8I	GTNNAC	2 cut(s)	141, 391
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	152, 347
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 29
HpyF3I	CTNAG	3 cut(s)	84, 101, 210
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	312, 341
KspAI	GTTAAC	1 cut(s)	391
KspI	CCGCGG	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	38, 373
Lsp1109I	GCAGC	2 cut(s)	17, 32
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	356, 380
MalI	GATC	2 cut(s)	40, 375
MboI	GATC	2 cut(s)	38, 373
MboII	GAAGA	4 cut(s)	235, 303, 306, 405
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	1 cut(s)	407
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	3 cut(s)	52, 119, 148
MseI	TTAA	2 cut(s)	267, 390
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	222, 258
MspR9I	CCNGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	14, 29
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	38, 373
NlaIII	CATG	2 cut(s)	312, 341
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	380
NspI	RCATGY	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	275
PciI	ACATGT	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	7, 19, 22
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	38
SacII	CCGCGG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	267, 390
SatI	GCNGC	3 cut(s)	6, 18, 21
Sau3AI	GATC	2 cut(s)	38, 373
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	3 cut(s)	289, 358, 382
Sfr303I	CCGCGG	1 cut(s)	18
SgrBI	CCGCGG	1 cut(s)	18
Sse9I	AATT	1 cut(s)	407
SsiI	CCGC	4 cut(s)	15, 17, 71, 228
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	4 cut(s)	153, 203, 216, 246
TasI	AATT	1 cut(s)	407
TauI	GCSGC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	267, 390
Tru9I	TTAA	2 cut(s)	267, 390
TscAI	CASTG	3 cut(s)	321, 389, 400
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	2 cut(s)	5, 20
Tsp45I	GTSAC	1 cut(s)	380
TspRI	CASTG	3 cut(s)	321, 389, 400
Van91I	CCANNNNNTGG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.