Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Forward (+)

44703281 .. 44706427

Gene Structure 3147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGCTTGCAGATTCTGAGGTCTTCTTCACCCCTTTCTTCTTCTTCTTCCAAGACCATAATCTTCAATCCCACGACCAAACCTACTCTAACAAACCTCCTCCTCCTCCGACCTTCAAACCCTACACCCACTACTTCCCTCTTCAAAACCCATTTCACAACTTTCTCACCAAAACCCATCACACCCGCCATTGGGTTTGGCGGGTCTTTGCACAACGCTAAGCGTAGCTTCCGTGGTGGAGTTGTTGTAGCTATGGCTGCACCCGGCCCGGTTCAGAAATCAGAGGAGGAGTGGAGAGCTGTCCTCTCTCCTGAACAGTTTCGGATTCTGAGGCAAAAAGGCACCGAGTATCCTGGCACCGGAGTATATGACAAGTTCTTTGAGGAGGGAGTCTATACCTGTGCAGGATGTGGGACTCCTCTCTACAAGTCAACAACCAAATTTAACTCTGGTTGTGGTTGGCCAGCTTTCTATGAGGGCCTTCCTGGGGCCATAAATTCTGTTCCGGACCGCGATGGGATGAGGGTTGAAATTACATGTGCGGCTTGTGGTGGACACCTGGGTCATGTATTCAAAGGTGAAGGTTTCCGGACGCCCACAGATGAACGCCATTGTGTGAACAGTATTTCACTTAAGTTTAGTCCCGCCAATTCTAATCCTTCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

222

Amino Acids

23.92

Weight (kDa)

9.2

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	102 - 215	4.5e-44	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	561
AccB1I	GGYRCC	2 cut(s)	341, 356
AccII	CGCG	1 cut(s)	513
AccIII	TCCGGA	2 cut(s)	505, 588
AciI	CCGC	5 cut(s)	186, 201, 511, 542, 645
AcoI	YGGCCR	1 cut(s)	461
AcsI	RAATTY	2 cut(s)	440, 496
AcyI	GRCGYC	1 cut(s)	593
AfiI	CCNNNNNNNGG	4 cut(s)	191, 192, 359, 487
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	1 cut(s)	536
AgsI	TTSAA	5 cut(s)	67, 117, 145, 530, 574
AjnI	CCWGG	3 cut(s)	352, 484, 558
AluBI	AGCT	4 cut(s)	228, 251, 299, 467
AluI	AGCT	4 cut(s)	228, 251, 299, 467
AlwNI	CAGNNNCTG	1 cut(s)	16
Aor13HI	TCCGGA	2 cut(s)	505, 588
AoxI	GGCC	4 cut(s)	265, 461, 478, 489
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	440, 496
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
Asp700I	GAANNNNTTC	1 cut(s)	318
AspS9I	GGNCC	4 cut(s)	266, 478, 489, 508
AsuC2I	CCSGG	2 cut(s)	264, 269
AsuHPI	GGTGA	3 cut(s)	21, 159, 590
AvaII	GGWCC	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	463
BanI	GGYRCC	2 cut(s)	341, 356
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	185, 509
BciT130I	CCWGG	3 cut(s)	354, 486, 560
BciVI	GTATCC	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	264, 269
BfrI	CTTAAG	1 cut(s)	632
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	2 cut(s)	258, 543
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	2 cut(s)	259, 544
Bme1390I	CCNGG	5 cut(s)	264, 269, 354, 486, 560
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	4 cut(s)	266, 478, 489, 508
BmiI	GGNNCC	3 cut(s)	343, 358, 490
BmrFI	CCNGG	5 cut(s)	264, 269, 354, 486, 560
BpiI	GAAGAC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuMI	CCSGG	2 cut(s)	264, 269
BsaHI	GRCGYC	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	232, 485, 559
BsaWI	WCCGGW	3 cut(s)	359, 505, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 192, 359, 487
BseAI	TCCGGA	2 cut(s)	505, 588
BseBI	CCWGG	3 cut(s)	354, 486, 560
BseDI	CCNNGG	3 cut(s)	232, 485, 559
BseGI	GGATG	2 cut(s)	413, 525
BseLI	CCNNNNNNNGG	4 cut(s)	191, 192, 359, 487
BseMII	CTCAG	2 cut(s)	8, 320
BseRI	GAGGAG	7 cut(s)	89, 92, 95, 299, 302, 398, 408
BseXI	GCAGC	1 cut(s)	244
BsgI	GTGCAG	2 cut(s)	243, 423
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	4 cut(s)	267, 463, 480, 491
BshNI	GGYRCC	2 cut(s)	341, 356
BsiSI	CCGG	5 cut(s)	264, 269, 360, 506, 589
BslFI	GGGAC	2 cut(s)	427, 627
BslI	CCNNNNNNNGG	4 cut(s)	191, 192, 359, 487
BsmFI	GGGAC	2 cut(s)	427, 627
BsnI	GGCC	4 cut(s)	267, 463, 480, 491
Bsp13I	TCCGGA	2 cut(s)	505, 588
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	5 cut(s)	186, 201, 511, 542, 645
BspANI	GGCC	4 cut(s)	267, 463, 480, 491
BspCNI	CTCAG	2 cut(s)	9, 321
BspEI	TCCGGA	2 cut(s)	505, 588
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	343, 358, 490
BspT107I	GGYRCC	2 cut(s)	341, 356
BspTI	CTTAAG	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	232, 485, 559
BssNI	GRCGYC	1 cut(s)	593
Bst2UI	CCWGG	3 cut(s)	354, 486, 560
Bst4CI	ACNGT	2 cut(s)	318, 623
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	593
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	8, 465
BstDEI	CTNAG	3 cut(s)	17, 219, 329
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	413, 525
BstFNI	CGCG	1 cut(s)	513
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	3 cut(s)	354, 486, 560
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	5 cut(s)	262, 267, 352, 484, 558
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	4 cut(s)	267, 463, 480, 491
BtgI	CCRYGG	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	413, 525
Cac8I	GCNNGC	2 cut(s)	8, 465
CaiI	CAGNNNCTG	1 cut(s)	16
Cfr13I	GGNCC	4 cut(s)	266, 478, 489, 508
CpoI	CGGWCCG	1 cut(s)	508
CseI	GACGC	1 cut(s)	601
CspI	CGGWCCG	1 cut(s)	508
CviAII	CATG	2 cut(s)	537, 566
DdeI	CTNAG	3 cut(s)	17, 219, 329
DrdI	GACNNNNNNGTC	1 cut(s)	561
DseDI	GACNNNNNNGTC	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	508
EcoO109I	RGGNCCY	1 cut(s)	478
EcoRII	CCWGG	3 cut(s)	352, 484, 558
FaeI	CATG	2 cut(s)	540, 569
FaiI	YATR	9 cut(s)	59, 254, 367, 369, 396, 474, 494, 538, 567
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	2 cut(s)	427, 627
FatI	CATG	2 cut(s)	536, 565
FauI	CCCGC	3 cut(s)	193, 194, 652
Fnu4HI	GCNGC	2 cut(s)	258, 543
FokI	GGATG	2 cut(s)	420, 532
Fsp4HI	GCNGC	2 cut(s)	258, 543
GluI	GCNGC	2 cut(s)	258, 543
HaeIII	GGCC	4 cut(s)	267, 463, 480, 491
HapII	CCGG	5 cut(s)	264, 269, 360, 506, 589
HgaI	GACGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	2 cut(s)	540, 569
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	4 cut(s)	13, 325, 390, 415
HpaII	CCGG	5 cut(s)	264, 269, 360, 506, 589
HphI	GGTGA	3 cut(s)	21, 159, 590
Hpy166II	GTNNAC	3 cut(s)	432, 554, 619
Hpy188I	TCNGA	7 cut(s)	18, 110, 276, 283, 324, 330, 664
Hpy188III	TCNNGA	3 cut(s)	311, 506, 589
Hpy8I	GTNNAC	3 cut(s)	432, 554, 619
HpyAV	CCTTC	4 cut(s)	123, 491, 575, 669
HpyCH4III	ACNGT	2 cut(s)	318, 623
HpyCH4V	TGCA	4 cut(s)	10, 211, 260, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	3 cut(s)	17, 219, 329
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	2 cut(s)	540, 569
Kpn2I	TCCGGA	2 cut(s)	505, 588
Lsp1109I	GCAGC	1 cut(s)	244
MboII	GAAGA	8 cut(s)	15, 18, 30, 33, 36, 39, 55, 133
MlsI	TGGCCA	1 cut(s)	463
MluCI	AATT	4 cut(s)	440, 496, 531, 649
MluNI	TGGCCA	1 cut(s)	463
MlyI	GAGTC	2 cut(s)	399, 409
MmeI	TCCRAC	1 cut(s)	133
Mox20I	TGGCCA	1 cut(s)	463
MroI	TCCGGA	2 cut(s)	505, 588
MroXI	GAANNNNTTC	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	463
MseI	TTAA	2 cut(s)	444, 633
Msp20I	TGGCCA	1 cut(s)	463
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	5 cut(s)	264, 269, 360, 506, 589
MspR9I	CCNGG	5 cut(s)	264, 269, 354, 486, 560
MvaI	CCWGG	3 cut(s)	354, 486, 560
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	257
NciI	CCSGG	2 cut(s)	264, 269
NlaIII	CATG	2 cut(s)	540, 569
NlaIV	GGNNCC	3 cut(s)	343, 358, 490
NspI	RCATGY	1 cut(s)	540
PciI	ACATGT	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	13, 325
PkrI	GCNGC	2 cut(s)	259, 544
PleI	GAGTC	2 cut(s)	398, 409
PpsI	GAGTC	2 cut(s)	398, 409
PscI	ACATGT	1 cut(s)	536
Psp6I	CCWGG	3 cut(s)	352, 484, 558
PspGI	CCWGG	3 cut(s)	352, 484, 558
PspN4I	GGNNCC	3 cut(s)	343, 358, 490
PspPI	GGNCC	4 cut(s)	266, 478, 489, 508
PstNI	CAGNNNCTG	1 cut(s)	16
Rsr2I	CGGWCCG	1 cut(s)	508
RsrII	CGGWCCG	1 cut(s)	508
SaqAI	TTAA	2 cut(s)	444, 633
SatI	GCNGC	2 cut(s)	258, 543
Sau96I	GGNCC	4 cut(s)	266, 478, 489, 508
SchI	GAGTC	2 cut(s)	399, 409
ScrFI	CCNGG	5 cut(s)	264, 269, 354, 486, 560
SinI	GGWCC	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	4 cut(s)	440, 496, 531, 649
SsiI	CCGC	5 cut(s)	186, 201, 511, 542, 645
StyD4I	CCNGG	5 cut(s)	262, 267, 352, 484, 558
TaaI	ACNGT	2 cut(s)	318, 623
TasI	AATT	4 cut(s)	440, 496, 531, 649
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	13, 325
Tru1I	TTAA	2 cut(s)	444, 633
Tru9I	TTAA	2 cut(s)	444, 633
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	618
TspGWI	ACGGA	1 cut(s)	221
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	2 cut(s)	440, 496
XceI	RCATGY	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.