Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Reverse (-)

9653899 .. 9657142

Gene Structure 3244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11010.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGCTTGCACATTTTCAGGTCTTCATCACCCCTTTCTTCTTCTGCTTCCAAGACCATAATCTTCAACCCCACAACCAAACCTACTCTCTCAAACCTCCTCCCCCGACCTTCAAACCCTTCACCCACTTCTCTCTTCCGAACCCACTTCACAGCTTTCTCACCAAAACCCATCAAAAGCGTCATCACACCCGCCATTGGGTTTGGTGGGTCTTTGCAAACCACTAAGCGTAGCTTCCGTGGCGGAGTTGTTGTAGCCATGGCTGCACCTGGTCCCGTTCAGAAATCAGAGGAGGAGTGGAGAGCTGTCCTATCTCCCGAGCAGTTTCGGATTCTGAGGCAAAAGGGCACCGAGTATCCTGGCACTGGAGTATATGACAAGTTCTTTGAGGAGGGAGTCTATACCTGTGCAGGATGTGGGACTCCTCTCTACAAGTCCACAACCAAATTTAATTCTGGTTGTGGTTGGCCAGCTTTCTACGAGGGTCTTCCTGGGGCCATAAATTCTGTTCCGGACCGCGATGGGATGAGGGTTGAGATTACATGTGCAGCTTGTGGTGGACACCTGGGTCATGTATTCAAAGGTGAAGGTTTTCGAACACCCACAGATGAACGCCATTGTGTGAACAGTGTTTCACTCAAGTTTACTCCTGCCAATTCTAATCCTTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

225

Amino Acids

24.13

Weight (kDa)

9.32

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	104 - 217	3.3e-44	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	347
AccII	CGCG	1 cut(s)	519
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	3 cut(s)	192, 243, 517
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	2 cut(s)	446, 502
AfiI	CCNNNNNNNGG	3 cut(s)	197, 198, 365
AflIII	ACRYGT	1 cut(s)	542
AgsI	TTSAA	3 cut(s)	67, 114, 580
AjnI	CCWGG	4 cut(s)	268, 358, 490, 564
AluBI	AGCT	5 cut(s)	155, 234, 305, 473, 551
AluI	AGCT	5 cut(s)	155, 234, 305, 473, 551
Ama87I	CYCGRG	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	2 cut(s)	467, 495
ApeKI	GCWGC	2 cut(s)	263, 548
ApoI	RAATTY	2 cut(s)	446, 502
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
Asp700I	GAANNNNTTC	1 cut(s)	591
AspS9I	GGNCC	3 cut(s)	272, 495, 514
AsuHPI	GGTGA	4 cut(s)	21, 114, 153, 596
AsuII	TTCGAA	1 cut(s)	595
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	272, 514
BaeGI	GKGCMC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	2 cut(s)	15, 479
BbvI	GCAGC	2 cut(s)	250, 560
BccI	CCATC	2 cut(s)	179, 515
BciT130I	CCWGG	4 cut(s)	270, 360, 492, 566
BciVI	GTATCC	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	366
BisI	GCNGC	2 cut(s)	264, 549
BlsI	GCNGC	2 cut(s)	265, 550
Bme1390I	CCNGG	4 cut(s)	270, 360, 492, 566
Bme18I	GGWCC	2 cut(s)	272, 514
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	272, 495, 514
BmiI	GGNNCC	3 cut(s)	274, 349, 496
BmrFI	CCNGG	4 cut(s)	270, 360, 492, 566
BpiI	GAAGAC	2 cut(s)	15, 479
BpmI	CTGGAG	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	595
BpuEI	CTTGAG	1 cut(s)	623
BsaJI	CCNNGG	4 cut(s)	238, 258, 491, 565
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 198, 365
Bse1I	ACTGG	1 cut(s)	370
BseAI	TCCGGA	1 cut(s)	511
BseBI	CCWGG	4 cut(s)	270, 360, 492, 566
BseDI	CCNNGG	4 cut(s)	238, 258, 491, 565
BseGI	GGATG	2 cut(s)	419, 531
BseLI	CCNNNNNNNGG	3 cut(s)	197, 198, 365
BseMII	CTCAG	2 cut(s)	326, 660
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	5 cut(s)	89, 305, 308, 404, 414
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	2 cut(s)	250, 560
BsgI	GTGCAG	3 cut(s)	249, 429, 567
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	469, 497
BshNI	GGYRCC	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	512
BslFI	GGGAC	2 cut(s)	258, 433
BslI	CCNNNNNNNGG	3 cut(s)	197, 198, 365
BsmFI	GGGAC	2 cut(s)	258, 433
BsnI	GGCC	2 cut(s)	469, 497
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	595
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp13I	TCCGGA	1 cut(s)	511
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	192, 243, 517
BspANI	GGCC	2 cut(s)	469, 497
BspCNI	CTCAG	2 cut(s)	327, 661
BspEI	TCCGGA	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	274, 349, 496
BspT104I	TTCGAA	1 cut(s)	595
BspT107I	GGYRCC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	4 cut(s)	238, 258, 491, 565
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	4 cut(s)	270, 360, 492, 566
Bst4CI	ACNGT	1 cut(s)	629
Bst6I	CTCTTC	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	595
BstC8I	GCNNGC	2 cut(s)	8, 471
BstDEI	CTNAG	3 cut(s)	225, 335, 669
BstDSI	CCRYGG	2 cut(s)	238, 258
BstF5I	GGATG	2 cut(s)	419, 531
BstFNI	CGCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 263
BstNI	CCWGG	4 cut(s)	270, 360, 492, 566
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	4 cut(s)	268, 358, 490, 564
BstSLI	GKGCMC	1 cut(s)	350
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	250, 560
BstV2I	GAAGAC	2 cut(s)	15, 479
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	469, 497
BtgI	CCRYGG	2 cut(s)	238, 258
BtgZI	GCGATG	1 cut(s)	534
BtsCI	GGATG	2 cut(s)	419, 531
BtsIMutI	CAGTG	2 cut(s)	363, 634
Cac8I	GCNNGC	2 cut(s)	8, 471
Cfr13I	GGNCC	3 cut(s)	272, 495, 514
CpoI	CGGWCCG	1 cut(s)	514
CseI	GACGC	1 cut(s)	169
CsiI	ACCWGGT	1 cut(s)	268
CspI	CGGWCCG	1 cut(s)	514
CviAII	CATG	3 cut(s)	259, 543, 572
DdeI	CTNAG	3 cut(s)	225, 335, 669
DrdI	GACNNNNNNGTC	1 cut(s)	567
DseDI	GACNNNNNNGTC	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	272, 514
Eco88I	CYCGRG	1 cut(s)	317
EcoRII	CCWGG	4 cut(s)	268, 358, 490, 564
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	262, 546, 575
FaiI	YATR	8 cut(s)	59, 260, 373, 375, 402, 500, 544, 573
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	2 cut(s)	258, 433
FatI	CATG	3 cut(s)	258, 542, 571
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	264, 549
FokI	GGATG	2 cut(s)	426, 538
Fsp4HI	GCNGC	2 cut(s)	264, 549
GluI	GCNGC	2 cut(s)	264, 549
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	469, 497
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	3 cut(s)	262, 546, 575
HinfI	GANTC	3 cut(s)	331, 396, 421
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	4 cut(s)	21, 114, 153, 596
Hpy166II	GTNNAC	4 cut(s)	438, 560, 625, 645
Hpy188I	TCNGA	6 cut(s)	140, 282, 289, 330, 336, 670
Hpy188III	TCNNGA	2 cut(s)	317, 512
Hpy8I	GTNNAC	4 cut(s)	438, 560, 625, 645
HpyAV	CCTTC	4 cut(s)	120, 129, 581, 675
HpyCH4III	ACNGT	1 cut(s)	629
HpyCH4V	TGCA	5 cut(s)	10, 217, 266, 410, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 263
HpyF3I	CTNAG	3 cut(s)	225, 335, 669
Hsp92II	CATG	3 cut(s)	262, 546, 575
Kpn2I	TCCGGA	1 cut(s)	511
Lsp1109I	GCAGC	2 cut(s)	250, 560
MabI	ACCWGGT	1 cut(s)	268
MboII	GAAGA	6 cut(s)	15, 30, 33, 55, 127, 479
MhlI	GDGCHC	1 cut(s)	350
MlsI	TGGCCA	1 cut(s)	469
MluCI	AATT	4 cut(s)	446, 451, 502, 655
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	2 cut(s)	405, 415
Mox20I	TGGCCA	1 cut(s)	469
MroI	TCCGGA	1 cut(s)	511
MroXI	GAANNNNTTC	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	469
MseI	TTAA	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	469
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	4 cut(s)	270, 360, 492, 566
MvaI	CCWGG	4 cut(s)	270, 360, 492, 566
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	2 cut(s)	240, 263
NcoI	CCATGG	1 cut(s)	258
NlaIII	CATG	3 cut(s)	262, 546, 575
NlaIV	GGNNCC	3 cut(s)	274, 349, 496
NspI	RCATGY	1 cut(s)	546
NspV	TTCGAA	1 cut(s)	595
PciI	ACATGT	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	265, 550
PleI	GAGTC	2 cut(s)	404, 415
PpsI	GAGTC	2 cut(s)	404, 415
PscI	ACATGT	1 cut(s)	542
Psp6I	CCWGG	4 cut(s)	268, 358, 490, 564
PspGI	CCWGG	4 cut(s)	268, 358, 490, 564
PspN4I	GGNNCC	3 cut(s)	274, 349, 496
PspPI	GGNCC	3 cut(s)	272, 495, 514
Rsr2I	CGGWCCG	1 cut(s)	514
RsrII	CGGWCCG	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	2 cut(s)	264, 549
Sau96I	GGNCC	3 cut(s)	272, 495, 514
SchI	GAGTC	2 cut(s)	405, 415
ScrFI	CCNGG	4 cut(s)	270, 360, 492, 566
SduI	GDGCHC	1 cut(s)	350
SexAI	ACCWGGT	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	595
SinI	GGWCC	2 cut(s)	272, 514
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	4 cut(s)	446, 451, 502, 655
SsiI	CCGC	3 cut(s)	192, 243, 517
StyD4I	CCNGG	4 cut(s)	268, 358, 490, 564
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	629
TaqI	TCGA	1 cut(s)	595
TasI	AATT	4 cut(s)	446, 451, 502, 655
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	2 cut(s)	370, 634
TseI	GCWGC	2 cut(s)	263, 548
TspDTI	ATGAA	2 cut(s)	15, 624
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	370, 634
VpaK11BI	GGWCC	2 cut(s)	272, 514
XapI	RAATTY	2 cut(s)	446, 502
XceI	RCATGY	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.