Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Reverse (-)

26601111 .. 26604356

Gene Structure 3246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGCTTGCAGATTCTGAGGTCTTCTTCACCCCTTTCTTCTTCTTCCAAGACCAAAATCTTCAACCCCACGACCAAACCTACTCTAGCAAACCTCCTCCTCCTCCGACCTTCAAACCCTACACCCACTACTTCTCTCTTCAAAACCCATTTCACAACTCTCTCACCAAAACCCATCACACCCGCCATTGGGTTTGGCGGGTCTTTGCAAAACGCTAAGCGTAGCTTCCGTGGTGGAGTTGTTGTAGCTATGGCTGCACCTGGCCCAGTTCAGAAATCAGAGGAGGAGTGGAGAGCTGTCCTCTCTCCAGAGCAGTATCCTGGCACCGGAGTATATGACAAGTTCTTTGAGGAGGGAGTCTATACCTGTGCAGGATGTGGGACTCCTCTCTACAAGTCAACAACCAAATTTAACTCTGGTTGTGGTTGGCCAGCTTTCTATGAGGGTCTTCCTGGGGCCATAAATTCTGTTCCGGACCGCGATGGGATGAGGGTTGAAATTACATGTGCGGCTTGTGGTGGACACCTGGGTCATGTATTCAAAGGTGAAGGTTTCCGGACACCCACAGATGAACGCCATTGTGTGAACAGTATTTCACTTAAGTTTAGTCCCGCCAATTCTAATCCTTCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

211

Amino Acids

22.55

Weight (kDa)

9.07

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	106 - 204	2.4e-37	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	323
AccII	CGCG	1 cut(s)	480
AccIII	TCCGGA	2 cut(s)	472, 555
AciI	CCGC	5 cut(s)	183, 198, 478, 509, 612
AcoI	YGGCCR	1 cut(s)	428
AcsI	RAATTY	2 cut(s)	407, 463
AfiI	CCNNNNNNNGG	3 cut(s)	188, 189, 326
AflII	CTTAAG	1 cut(s)	599
AflIII	ACRYGT	1 cut(s)	503
AgsI	TTSAA	5 cut(s)	64, 114, 142, 497, 541
AjnI	CCWGG	4 cut(s)	259, 319, 451, 525
AluBI	AGCT	4 cut(s)	225, 248, 296, 434
AluI	AGCT	4 cut(s)	225, 248, 296, 434
AlwNI	CAGNNNCTG	1 cut(s)	16
Aor13HI	TCCGGA	2 cut(s)	472, 555
AoxI	GGCC	3 cut(s)	262, 428, 456
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	407, 463
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspS9I	GGNCC	3 cut(s)	263, 456, 475
AsuHPI	GGTGA	3 cut(s)	21, 156, 557
AvaII	GGWCC	1 cut(s)	475
BalI	TGGCCA	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	323
BbsI	GAAGAC	2 cut(s)	15, 440
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	2 cut(s)	182, 476
BciT130I	CCWGG	4 cut(s)	261, 321, 453, 527
BciVI	GTATCC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	599
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	2 cut(s)	255, 510
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	2 cut(s)	256, 511
Bme1390I	CCNGG	4 cut(s)	261, 321, 453, 527
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	3 cut(s)	263, 456, 475
BmiI	GGNNCC	2 cut(s)	325, 457
BmrFI	CCNGG	4 cut(s)	261, 321, 453, 527
BmrI	ACTGGG	1 cut(s)	260
BmuI	ACTGGG	1 cut(s)	260
BpiI	GAAGAC	2 cut(s)	15, 440
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
BpmI	CTGGAG	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	216
BsaJI	CCNNGG	3 cut(s)	229, 452, 526
BsaWI	WCCGGW	3 cut(s)	326, 472, 555
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 189, 326
Bse1I	ACTGG	1 cut(s)	266
BseAI	TCCGGA	2 cut(s)	472, 555
BseBI	CCWGG	4 cut(s)	261, 321, 453, 527
BseDI	CCNNGG	3 cut(s)	229, 452, 526
BseGI	GGATG	2 cut(s)	380, 492
BseLI	CCNNNNNNNGG	3 cut(s)	188, 189, 326
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	7 cut(s)	86, 89, 92, 296, 299, 365, 375
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	2 cut(s)	240, 390
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	264, 430, 458
BshNI	GGYRCC	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	327, 473, 556
BslFI	GGGAC	2 cut(s)	394, 594
BslI	CCNNNNNNNGG	3 cut(s)	188, 189, 326
BsmFI	GGGAC	2 cut(s)	394, 594
BsnI	GGCC	3 cut(s)	264, 430, 458
Bsp13I	TCCGGA	2 cut(s)	472, 555
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	5 cut(s)	183, 198, 478, 509, 612
BspANI	GGCC	3 cut(s)	264, 430, 458
BspCNI	CTCAG	1 cut(s)	9
BspEI	TCCGGA	2 cut(s)	472, 555
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	325, 457
BspT107I	GGYRCC	1 cut(s)	323
BspTI	CTTAAG	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	229, 452, 526
Bst2UI	CCWGG	4 cut(s)	261, 321, 453, 527
Bst4CI	ACNGT	1 cut(s)	590
Bst6I	CTCTTC	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	8, 432
BstDEI	CTNAG	2 cut(s)	17, 216
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	380, 492
BstFNI	CGCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	4 cut(s)	261, 321, 453, 527
BstNSI	RCATGY	1 cut(s)	507
BstSCI	CCNGG	4 cut(s)	259, 319, 451, 525
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	2 cut(s)	15, 440
BsuI	GTATCC	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	264, 430, 458
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	380, 492
Cac8I	GCNNGC	2 cut(s)	8, 432
CaiI	CAGNNNCTG	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	263, 456, 475
CpoI	CGGWCCG	1 cut(s)	475
CspI	CGGWCCG	1 cut(s)	475
CviAII	CATG	2 cut(s)	504, 533
DdeI	CTNAG	2 cut(s)	17, 216
DrdI	GACNNNNNNGTC	1 cut(s)	528
DseDI	GACNNNNNNGTC	1 cut(s)	528
EaeI	YGGCCR	1 cut(s)	428
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	475
EcoRII	CCWGG	4 cut(s)	259, 319, 451, 525
FaeI	CATG	2 cut(s)	507, 536
FaiI	YATR	8 cut(s)	251, 334, 336, 363, 441, 461, 505, 534
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	2 cut(s)	394, 594
FatI	CATG	2 cut(s)	503, 532
FauI	CCCGC	3 cut(s)	190, 191, 619
Fnu4HI	GCNGC	2 cut(s)	255, 510
FokI	GGATG	2 cut(s)	387, 499
Fsp4HI	GCNGC	2 cut(s)	255, 510
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	255, 510
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	264, 430, 458
HapII	CCGG	3 cut(s)	327, 473, 556
Hin1II	CATG	2 cut(s)	507, 536
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	3 cut(s)	13, 357, 382
HpaII	CCGG	3 cut(s)	327, 473, 556
HphI	GGTGA	3 cut(s)	21, 156, 557
Hpy166II	GTNNAC	3 cut(s)	399, 521, 586
Hpy188I	TCNGA	5 cut(s)	18, 107, 273, 280, 631
Hpy188III	TCNNGA	3 cut(s)	308, 473, 556
Hpy8I	GTNNAC	3 cut(s)	399, 521, 586
HpyAV	CCTTC	3 cut(s)	120, 542, 636
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4V	TGCA	4 cut(s)	10, 208, 257, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	17, 216
Hsp92II	CATG	2 cut(s)	507, 536
Kpn2I	TCCGGA	2 cut(s)	472, 555
Lsp1109I	GCAGC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	86
MboII	GAAGA	8 cut(s)	15, 18, 30, 33, 36, 52, 130, 440
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	4 cut(s)	407, 463, 498, 616
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	366, 376
MmeI	TCCRAC	1 cut(s)	130
Mox20I	TGGCCA	1 cut(s)	430
MroI	TCCGGA	2 cut(s)	472, 555
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	2 cut(s)	411, 600
Msp20I	TGGCCA	1 cut(s)	430
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	3 cut(s)	327, 473, 556
MspR9I	CCNGG	4 cut(s)	261, 321, 453, 527
MvaI	CCWGG	4 cut(s)	261, 321, 453, 527
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	254
NlaIII	CATG	2 cut(s)	507, 536
NlaIV	GGNNCC	2 cut(s)	325, 457
NspI	RCATGY	1 cut(s)	507
PciI	ACATGT	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	256, 511
PleI	GAGTC	2 cut(s)	365, 376
PpsI	GAGTC	2 cut(s)	365, 376
PscI	ACATGT	1 cut(s)	503
Psp6I	CCWGG	4 cut(s)	259, 319, 451, 525
PspGI	CCWGG	4 cut(s)	259, 319, 451, 525
PspN4I	GGNNCC	2 cut(s)	325, 457
PspPI	GGNCC	3 cut(s)	263, 456, 475
PstNI	CAGNNNCTG	1 cut(s)	16
Rsr2I	CGGWCCG	1 cut(s)	475
RsrII	CGGWCCG	1 cut(s)	475
SaqAI	TTAA	2 cut(s)	411, 600
SatI	GCNGC	2 cut(s)	255, 510
Sau96I	GGNCC	3 cut(s)	263, 456, 475
SchI	GAGTC	2 cut(s)	366, 376
ScrFI	CCNGG	4 cut(s)	261, 321, 453, 527
SinI	GGWCC	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	4 cut(s)	407, 463, 498, 616
SsiI	CCGC	5 cut(s)	183, 198, 478, 509, 612
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	4 cut(s)	259, 319, 451, 525
TaaI	ACNGT	1 cut(s)	590
TasI	AATT	4 cut(s)	407, 463, 498, 616
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	411, 600
Tru9I	TTAA	2 cut(s)	411, 600
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	585
TspGWI	ACGGA	1 cut(s)	218
Vha464I	CTTAAG	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	2 cut(s)	407, 463
XceI	RCATGY	1 cut(s)	507
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.