Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Reverse (-)

11586980 .. 11588373

Gene Structure 1394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCAATGACCGCGGCTGCAGTTCCATCAAGTGGATCTTTCCAGAAACAAGACGAAGAGTGGCGTGCTGTTCTGTCTCCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGAACAGATAAACGAGGCAAAGGAGAGTTTACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACTGCTCTTTATAAATCGACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGACGCCATCCCCGGTGCTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACATGTGCAGTGTGTGATGGACATCTAGGCCATGTTTTCAAAGGCGAAGGTTACTCTACTCCAACCGATCAACGTCACTGCGTTAACAGTGTCTCTCTCAAATTCGCTTCTGCTGATTCTTCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007584 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009991 GO:0010035 GO:0016491 GO:0016667 GO:0016671 GO:0031667 GO:0033743 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

143

Amino Acids

15.43

Weight (kDa)

8.54

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	25 - 137	7.4e-43	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccII	CGCG	1 cut(s)	14
AciI	CCGC	3 cut(s)	12, 14, 225
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	32, 281
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	343
Alw26I	GTCTC	2 cut(s)	81, 400
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	2 cut(s)	230, 331
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	404
AsuC2I	CCSGG	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	3 cut(s)	34, 257, 314
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	81, 400
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	15, 18
BlsI	GCNGC	2 cut(s)	16, 19
Bme1390I	CCNGG	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	12, 253
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 281
Bse3DI	GCAATG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	12, 253
BseGI	GGATG	1 cut(s)	249
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	32, 281
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	72, 112
BseXI	GCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	232, 333
BsiSI	CCGG	2 cut(s)	219, 255
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	32, 281
BsmAI	GTCTC	2 cut(s)	81, 400
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	232, 333
Bsp143I	GATC	2 cut(s)	35, 370
BspACI	CCGC	3 cut(s)	12, 14, 225
BspANI	GGCC	2 cut(s)	232, 333
BspCNI	CTCAG	2 cut(s)	73, 111
BspFNI	CGCG	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	12, 253
BssMI	GATC	2 cut(s)	35, 370
BssNI	GRCGYC	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	66, 234
BstDEI	CTNAG	3 cut(s)	81, 98, 207
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	38, 373
BstMAI	GTCTC	2 cut(s)	81, 400
BstMBI	GATC	2 cut(s)	35, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	232, 333
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	249
BtsI	GCAGTG	2 cut(s)	318, 379
BtsIMutI	CAGTG	3 cut(s)	318, 379, 397
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	66, 234
Cfr42I	CCGCGG	1 cut(s)	15
CseI	GACGC	1 cut(s)	254
CviAII	CATG	2 cut(s)	306, 335
CviJI	RGCY	3 cut(s)	17, 232, 333
CviKI_1	RGCY	3 cut(s)	17, 232, 333
DdeI	CTNAG	3 cut(s)	81, 98, 207
DpnI	GATC	2 cut(s)	37, 372
DpnII	GATC	2 cut(s)	35, 370
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
FaeI	CATG	2 cut(s)	309, 338
FaiI	YATR	4 cut(s)	165, 195, 307, 336
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	2 cut(s)	305, 334
Fnu4HI	GCNGC	2 cut(s)	15, 18
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	15, 18
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	2 cut(s)	15, 18
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	232, 333
HapII	CCGG	2 cut(s)	219, 255
HgaI	GACGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	309, 338
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	2 cut(s)	215, 419
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	219, 255
Hpy166II	GTNNAC	2 cut(s)	138, 388
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	3 cut(s)	43, 80, 275
Hpy8I	GTNNAC	2 cut(s)	138, 388
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	149, 344
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	2 cut(s)	20, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	81, 98, 207
HpySE526I	ACGT	1 cut(s)	376
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	309, 338
KspAI	GTTAAC	1 cut(s)	388
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	35, 370
LpnPI	CCDG	8 cut(s)	56, 93, 159, 232, 246, 267, 268, 288
Lsp1109I	GCAGC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	2 cut(s)	353, 377
MalI	GATC	2 cut(s)	37, 372
MboI	GATC	2 cut(s)	35, 370
MboII	GAAGA	5 cut(s)	68, 232, 300, 303, 414
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	2 cut(s)	116, 145
MseI	TTAA	2 cut(s)	264, 387
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	2 cut(s)	219, 255
MspR9I	CCNGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	35, 370
NlaIII	CATG	2 cut(s)	309, 338
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	309
PaqCI	CACCTGC	1 cut(s)	272
PciI	ACATGT	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	16, 19
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PscI	ACATGT	1 cut(s)	305
PsiI	TTATAA	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	35
SacII	CCGCGG	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	264, 387
SatI	GCNGC	2 cut(s)	15, 18
Sau3AI	GATC	2 cut(s)	35, 370
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	3 cut(s)	286, 355, 379
SfcI	CTRYAG	1 cut(s)	18
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	404
SsiI	CCGC	3 cut(s)	12, 14, 225
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	4 cut(s)	150, 200, 213, 243
TasI	AATT	1 cut(s)	404
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	264, 387
Tru9I	TTAA	2 cut(s)	264, 387
TscAI	CASTG	3 cut(s)	318, 386, 397
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	377
TspRI	CASTG	3 cut(s)	318, 386, 397
Van91I	CCANNNNNTGG	1 cut(s)	32
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	1 cut(s)	309
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.