Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Forward (+)

11119105 .. 11122004

Gene Structure 2900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGCTCGCACGTTCTCAAATCCTCCCCCCTTTCTTCTTCCTCCAAGACCATAATCTTCAACCCCACAATCACACTCACTATCACGAAGCTCCTCCACCCTCCAAAACCTGCACCCACTTCTCTCTTCAGAACCCATTTCAGAGCTCTACCACCAAGACCCATCTCAAGCGTCATACCCGCTATTGGGGTTGGCGGGTCTTTGTTCCAGAGTAAGCGTAGCTTTCGCGGTGGGGTTGTTGTAGCCATGGCTGCTCCTGGGTCGGTCCAGAAATCAGAGGAGGAGTGGCGGGCCGTGCTCTCGTCCGAGCAGTTTCGGATTCTGAGGCAAAAAGGCACAGAGTATCCAGGCACAGGGGAATATGACAAGTTCTTTGAGGAGGGAGTCTATGGCTGTGCAGGATGCGGGACTCCTCTATACAGATCCACCACCAAATTTAATTCTGGATGTGGTTGGCCAGCTTTCTATGAGGGTCTTCCTGGGGCCATAAATTATAACCCGGATCCAGATGGAATGAGGACCGAAATTACATGTGCGGCTTGTGGTGGACACCTGGGTCATGTATTCAAAGGCGAAGGCTTCCGAACACCCACGGATGAGCGCCATTGTGTGAATAGTATTTCACTAAAGTTTTCTCCTGCCAATTCTAATCCTTCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

221

Amino Acids

23.71

Weight (kDa)

9.2

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AasI	GACNNNNNNGTC	1 cut(s)	555
Acc36I	ACCTGC	1 cut(s)	118
AccII	CGCG	1 cut(s)	228
AciI	CCGC	6 cut(s)	180, 195, 228, 289, 405, 536
AclWI	GGATC	3 cut(s)	417, 497, 510
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	112
AfiI	CCNNNNNNNGG	3 cut(s)	185, 186, 353
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	61, 568
AjnI	CCWGG	4 cut(s)	256, 346, 478, 552
AluBI	AGCT	4 cut(s)	91, 146, 222, 461
AluI	AGCT	4 cut(s)	91, 146, 222, 461
Alw21I	GWGCWC	2 cut(s)	148, 300
AlwI	GGATC	3 cut(s)	417, 497, 510
AoxI	GGCC	3 cut(s)	291, 455, 483
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	4 cut(s)	265, 291, 483, 519
AsuC2I	CCSGG	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	265, 519
BalI	TGGCCA	1 cut(s)	457
BamHI	GGATCC	1 cut(s)	502
BanII	GRGCYC	2 cut(s)	8, 148
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	2 cut(s)	148, 300
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	170, 503
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	4 cut(s)	258, 348, 480, 554
BciVI	GTATCC	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	604
BfuAI	ACCTGC	1 cut(s)	118
BfuI	GTATCC	1 cut(s)	354
BisI	GCNGC	2 cut(s)	252, 537
BlsI	GCNGC	2 cut(s)	253, 538
Bme1390I	CCNGG	5 cut(s)	258, 348, 480, 500, 554
Bme18I	GGWCC	2 cut(s)	265, 519
BmgT120I	GGNCC	4 cut(s)	265, 291, 483, 519
BmiI	GGNNCC	2 cut(s)	484, 504
BmrFI	CCNGG	5 cut(s)	258, 348, 480, 500, 554
BmsI	GCATC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	500
BsaJI	CCNNGG	5 cut(s)	246, 257, 479, 553, 591
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 186, 353
BseBI	CCWGG	4 cut(s)	258, 348, 480, 554
BseDI	CCNNGG	5 cut(s)	246, 257, 479, 553, 591
BseGI	GGATG	3 cut(s)	407, 452, 601
BseLI	CCNNNNNNNGG	3 cut(s)	185, 186, 353
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	5 cut(s)	83, 293, 296, 392, 402
BseXI	GCAGC	1 cut(s)	238
BsgI	GTGCAG	2 cut(s)	96, 417
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	293, 457, 485
BsiHKAI	GWGCWC	2 cut(s)	148, 300
BsiSI	CCGG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	3 cut(s)	185, 186, 353
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	293, 457, 485
Bsp1286I	GDGCHC	3 cut(s)	8, 148, 300
Bsp143I	GATC	2 cut(s)	422, 502
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	6 cut(s)	180, 195, 228, 289, 405, 536
BspANI	GGCC	3 cut(s)	293, 457, 485
BspCNI	CTCAG	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	484, 504
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	3 cut(s)	417, 497, 510
BssECI	CCNNGG	5 cut(s)	246, 257, 479, 553, 591
BssMI	GATC	2 cut(s)	422, 502
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	4 cut(s)	258, 348, 480, 554
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	8, 291, 459
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	2 cut(s)	246, 591
BstF5I	GGATG	3 cut(s)	407, 452, 601
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	604
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	2 cut(s)	425, 505
BstMBI	GATC	2 cut(s)	422, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 295
BstNI	CCWGG	4 cut(s)	258, 348, 480, 554
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	5 cut(s)	256, 346, 478, 498, 552
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	2 cut(s)	422, 502
BstYI	RGATCY	2 cut(s)	422, 502
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	293, 457, 485
BtgI	CCRYGG	2 cut(s)	246, 591
BtsCI	GGATG	3 cut(s)	407, 452, 601
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	3 cut(s)	8, 291, 459
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	4 cut(s)	265, 291, 483, 519
CseI	GACGC	1 cut(s)	160
CviAII	CATG	3 cut(s)	247, 531, 560
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	2 cut(s)	424, 504
DpnII	GATC	2 cut(s)	422, 502
DrdI	GACNNNNNNGTC	1 cut(s)	555
DseDI	GACNNNNNNGTC	1 cut(s)	555
EaeI	YGGCCR	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	8, 148
Eco47I	GGWCC	2 cut(s)	265, 519
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	146
EcoRII	CCWGG	4 cut(s)	256, 346, 478, 552
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	8, 148
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	3 cut(s)	250, 534, 563
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	3 cut(s)	246, 530, 559
FauI	CCCGC	4 cut(s)	187, 188, 282, 398
Fnu4HI	GCNGC	2 cut(s)	252, 537
FokI	GGATG	3 cut(s)	414, 459, 608
FriOI	GRGCYC	2 cut(s)	8, 148
Fsp4HI	GCNGC	2 cut(s)	252, 537
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	2 cut(s)	252, 537
HaeII	RGCGCY	1 cut(s)	604
HaeIII	GGCC	3 cut(s)	293, 457, 485
HapII	CCGG	1 cut(s)	500
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	3 cut(s)	250, 534, 563
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HinfI	GANTC	3 cut(s)	319, 384, 409
HpaII	CCGG	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	7 cut(s)	131, 143, 277, 307, 318, 324, 584
Hpy188III	TCNNGA	5 cut(s)	85, 208, 268, 444, 506
Hpy8I	GTNNAC	1 cut(s)	548
HpyAV	CCTTC	2 cut(s)	569, 663
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	113, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 295
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	250, 534, 563
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	422, 502
LmnI	GCTCC	2 cut(s)	96, 259
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	392
MaeII	ACGT	1 cut(s)	12
MalI	GATC	2 cut(s)	424, 504
MboI	GATC	2 cut(s)	422, 502
MboII	GAAGA	5 cut(s)	27, 30, 49, 118, 467
MflI	RGATCY	2 cut(s)	422, 502
MhlI	GDGCHC	3 cut(s)	8, 148, 300
MlsI	TGGCCA	1 cut(s)	457
MluCI	AATT	5 cut(s)	434, 439, 490, 525, 643
MluNI	TGGCCA	1 cut(s)	457
MlyI	GAGTC	2 cut(s)	393, 403
Mox20I	TGGCCA	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	457
MseI	TTAA	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	457
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	5 cut(s)	258, 348, 480, 500, 554
MvaI	CCWGG	4 cut(s)	258, 348, 480, 554
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	251, 295
NciI	CCSGG	1 cut(s)	500
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	2 cut(s)	422, 502
NlaIII	CATG	3 cut(s)	250, 534, 563
NlaIV	GGNNCC	2 cut(s)	484, 504
NspI	RCATGY	1 cut(s)	534
PciI	ACATGT	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	253, 538
PleI	GAGTC	2 cut(s)	392, 403
PpsI	GAGTC	2 cut(s)	392, 403
PscI	ACATGT	1 cut(s)	530
PsiI	TTATAA	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	4 cut(s)	256, 346, 478, 552
PspGI	CCWGG	4 cut(s)	256, 346, 478, 552
PspN4I	GGNNCC	2 cut(s)	484, 504
PspPI	GGNCC	4 cut(s)	265, 291, 483, 519
PsuI	RGATCY	2 cut(s)	422, 502
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	2 cut(s)	252, 537
Sau3AI	GATC	2 cut(s)	422, 502
Sau96I	GGNCC	4 cut(s)	265, 291, 483, 519
SchI	GAGTC	2 cut(s)	393, 403
ScrFI	CCNGG	5 cut(s)	258, 348, 480, 500, 554
SduI	GDGCHC	3 cut(s)	8, 148, 300
SetI	ASST	7 cut(s)	15, 93, 112, 148, 224, 463, 555
SfaNI	GCATC	1 cut(s)	392
SinI	GGWCC	2 cut(s)	265, 519
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	5 cut(s)	434, 439, 490, 525, 643
SsiI	CCGC	6 cut(s)	180, 195, 228, 289, 405, 536
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	5 cut(s)	256, 346, 478, 498, 552
StyI	CCWWGG	1 cut(s)	246
TaiI	ACGT	1 cut(s)	15
TaqII	GACCGA	2 cut(s)	253, 536
TasI	AATT	5 cut(s)	434, 439, 490, 525, 643
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TseI	GCWGC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	608
VpaK11BI	GGWCC	2 cut(s)	265, 519
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.