RLG00000013871

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006023
Physical Location & Seq
Forward (+)
43342071 .. 43343974
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013871

Sequence Viewer

Length: 666 bp
ATGGGCTTGCAGATTCTGAGGTCTTCTTCACCCCTTTCTTCTTCTTCCAAGACCATAATCTTTAACCCCACGACCAAACCTACTCTAACAAACCTCCTCCTCCTCCGACCTTCAAACCTTACACCCACTACTTCTTTCTTCAAAACCCATTTCACAACTTTCTCACCAAAACTCATCAAACCCGCCATTGGGTTTGGTGGGTCTTTGCAAAACACTAGGCGTAGCTTCCGTGGTGGAGTTGTTGTATCTATGGCTGCACCTAACCCGGTTCAGAAATCAGAGGAGGAGTGGAGAGCTGTCCTCTCTCCCGAGCAGTTTCGGATTCTGAGGCAAAAAGGCACCGAGTATCCTGGCACCGGAGTATATGACAAGTTCTTTGAGGAGGGAGTTTATACCTGTGCAGGATGTGGGACTCCTCTCTACAAATCCACAACCAAATTTAACTCTGGGTGTGGTTGGCCAGCTTTCTACGAGGGTCTTCCTGGGGCCATAAATTCTGTTCCGGACCGCGATGGGATGAGGATTGAAATTACATGTGCAGCTTGCGGTGGACACCTGGGTCATGTATTTAAAGGCGAAGGTTTCCGGACACCCACAGATGAACGCCATTGTGTGAACAGTATTTCACTCAAGTTTAGTCCTGCCAATTCTAATCCTTCTGAGTGA

Protein Analysis

222

Amino Acids

24.07

Weight (kDa)

9.32

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 101 - 214 4.7e-44 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 558
AccB1I GGYRCC 2 cut(s) 338, 353
AccII CGCG 1 cut(s) 510
AccIII TCCGGA 2 cut(s) 502, 585
AciI CCGC 3 cut(s) 183, 508, 546
AcoI YGGCCR 1 cut(s) 458
AcsI RAATTY 2 cut(s) 437, 493
AfiI CCNNNNNNNGG 3 cut(s) 188, 189, 356
AflIII ACRYGT 1 cut(s) 533
AgsI TTSAA 3 cut(s) 114, 142, 527
AjnI CCWGG 3 cut(s) 349, 481, 555
AluBI AGCT 4 cut(s) 225, 296, 464, 542
AluI AGCT 4 cut(s) 225, 296, 464, 542
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 308
Aor13HI TCCGGA 2 cut(s) 502, 585
AoxI GGCC 2 cut(s) 458, 486
ApeKI GCWGC 2 cut(s) 254, 539
ApoI RAATTY 2 cut(s) 437, 493
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AspS9I GGNCC 2 cut(s) 486, 505
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 21, 156
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 505
BalI TGGCCA 1 cut(s) 460
BanI GGYRCC 2 cut(s) 338, 353
BbsI GAAGAC 2 cut(s) 15, 470
BbvI GCAGC 2 cut(s) 241, 551
BccI CCATC 1 cut(s) 506
BciT130I CCWGG 3 cut(s) 351, 483, 557
BciVI GTATCC 1 cut(s) 357
BcnI CCSGG 1 cut(s) 266
BfaI CTAG 1 cut(s) 216
BfuI GTATCC 1 cut(s) 357
BisI GCNGC 2 cut(s) 255, 540
BlsI GCNGC 2 cut(s) 256, 541
Bme1390I CCNGG 4 cut(s) 266, 351, 483, 557
Bme18I GGWCC 1 cut(s) 505
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 486, 505
BmiI GGNNCC 3 cut(s) 340, 355, 487
BmrFI CCNGG 4 cut(s) 266, 351, 483, 557
BpiI GAAGAC 2 cut(s) 15, 470
BplI GAGNNNNNCTC 2 cut(s) 285, 317
BpuEI CTTGAG 1 cut(s) 614
BpuMI CCSGG 1 cut(s) 266
BsaJI CCNNGG 3 cut(s) 229, 482, 556
BsaWI WCCGGW 3 cut(s) 356, 502, 585
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 189, 356
BseAI TCCGGA 2 cut(s) 502, 585
BseBI CCWGG 3 cut(s) 351, 483, 557
BseDI CCNNGG 3 cut(s) 229, 482, 556
BseGI GGATG 2 cut(s) 410, 522
BseLI CCNNNNNNNGG 3 cut(s) 188, 189, 356
BseMII CTCAG 3 cut(s) 8, 317, 651
BseRI GAGGAG 7 cut(s) 86, 89, 92, 296, 299, 395, 405
BseXI GCAGC 2 cut(s) 241, 551
BsgI GTGCAG 3 cut(s) 240, 420, 558
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 2 cut(s) 460, 488
BshNI GGYRCC 2 cut(s) 338, 353
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 4 cut(s) 266, 357, 503, 586
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 3 cut(s) 188, 189, 356
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 2 cut(s) 460, 488
BsoBI CYCGRG 1 cut(s) 308
Bsp13I TCCGGA 2 cut(s) 502, 585
BspACI CCGC 3 cut(s) 183, 508, 546
BspANI GGCC 2 cut(s) 460, 488
BspCNI CTCAG 3 cut(s) 9, 318, 652
BspEI TCCGGA 2 cut(s) 502, 585
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 3 cut(s) 340, 355, 487
BspT107I GGYRCC 2 cut(s) 338, 353
BssECI CCNNGG 3 cut(s) 229, 482, 556
Bst2UI CCWGG 3 cut(s) 351, 483, 557
Bst4CI ACNGT 1 cut(s) 620
BstC8I GCNNGC 3 cut(s) 8, 462, 544
BstDEI CTNAG 3 cut(s) 17, 326, 660
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 2 cut(s) 410, 522
BstFNI CGCG 1 cut(s) 510
BstNI CCWGG 3 cut(s) 351, 483, 557
BstNSI RCATGY 1 cut(s) 537
BstSCI CCNGG 4 cut(s) 264, 349, 481, 555
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 241, 551
BstV2I GAAGAC 2 cut(s) 15, 470
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 2 cut(s) 460, 488
BtgI CCRYGG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 2 cut(s) 410, 522
Cac8I GCNNGC 3 cut(s) 8, 462, 544
CaiI CAGNNNCTG 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 486, 505
CpoI CGGWCCG 1 cut(s) 505
CspI CGGWCCG 1 cut(s) 505
CviAII CATG 2 cut(s) 534, 563
CviJI RGCY 8 cut(s) 6, 225, 254, 296, 460, 464, 488, 542
CviKI_1 RGCY 8 cut(s) 6, 225, 254, 296, 460, 464, 488, 542
DdeI CTNAG 3 cut(s) 17, 326, 660
DraI TTTAAA 1 cut(s) 571
DrdI GACNNNNNNGTC 1 cut(s) 558
DseDI GACNNNNNNGTC 1 cut(s) 558
EaeI YGGCCR 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 308
EcoRII CCWGG 3 cut(s) 349, 481, 555
FaeI CATG 2 cut(s) 537, 566
FaiI YATR 8 cut(s) 56, 251, 364, 366, 393, 491, 535, 564
FaqI GGGAC 1 cut(s) 424
FatI CATG 2 cut(s) 533, 562
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 255, 540
FokI GGATG 2 cut(s) 417, 529
Fsp4HI GCNGC 2 cut(s) 255, 540
FspBI CTAG 1 cut(s) 216
GluI GCNGC 2 cut(s) 255, 540
HaeIII GGCC 2 cut(s) 460, 488
HapII CCGG 4 cut(s) 266, 357, 503, 586
Hin1II CATG 2 cut(s) 537, 566
HinfI GANTC 3 cut(s) 13, 322, 412
HpaII CCGG 4 cut(s) 266, 357, 503, 586
HphI GGTGA 2 cut(s) 21, 156
Hpy166II GTNNAC 2 cut(s) 551, 616
Hpy188I TCNGA 7 cut(s) 18, 107, 273, 280, 321, 327, 661
Hpy188III TCNNGA 3 cut(s) 308, 503, 586
Hpy8I GTNNAC 2 cut(s) 551, 616
HpyAV CCTTC 3 cut(s) 120, 572, 666
HpyCH4III ACNGT 1 cut(s) 620
HpyCH4V TGCA 5 cut(s) 10, 208, 257, 401, 539
HpyF3I CTNAG 3 cut(s) 17, 326, 660
Hsp92II CATG 2 cut(s) 537, 566
Kpn2I TCCGGA 2 cut(s) 502, 585
Lsp1109I GCAGC 2 cut(s) 241, 551
MaeI CTAG 1 cut(s) 216
MboII GAAGA 7 cut(s) 15, 18, 30, 33, 36, 130, 470
MlsI TGGCCA 1 cut(s) 460
MluCI AATT 4 cut(s) 437, 493, 528, 646
MluNI TGGCCA 1 cut(s) 460
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 130
Mox20I TGGCCA 1 cut(s) 460
MroI TCCGGA 2 cut(s) 502, 585
MscI TGGCCA 1 cut(s) 460
MseI TTAA 3 cut(s) 63, 441, 570
Msp20I TGGCCA 1 cut(s) 460
MspI CCGG 4 cut(s) 266, 357, 503, 586
MspR9I CCNGG 4 cut(s) 266, 351, 483, 557
MvaI CCWGG 3 cut(s) 351, 483, 557
MvnI CGCG 1 cut(s) 510
NciI CCSGG 1 cut(s) 266
NlaIII CATG 2 cut(s) 537, 566
NlaIV GGNNCC 3 cut(s) 340, 355, 487
NspI RCATGY 1 cut(s) 537
PciI ACATGT 1 cut(s) 533
PfeI GAWTC 2 cut(s) 13, 322
PkrI GCNGC 2 cut(s) 256, 541
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PscI ACATGT 1 cut(s) 533
Psp6I CCWGG 3 cut(s) 349, 481, 555
PspGI CCWGG 3 cut(s) 349, 481, 555
PspN4I GGNNCC 3 cut(s) 340, 355, 487
PspPI GGNCC 2 cut(s) 486, 505
PstNI CAGNNNCTG 1 cut(s) 16
Rsr2I CGGWCCG 1 cut(s) 505
RsrII CGGWCCG 1 cut(s) 505
SaqAI TTAA 3 cut(s) 63, 441, 570
SatI GCNGC 2 cut(s) 255, 540
Sau96I GGNCC 2 cut(s) 486, 505
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 4 cut(s) 266, 351, 483, 557
SinI GGWCC 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 4 cut(s) 437, 493, 528, 646
SsiI CCGC 3 cut(s) 183, 508, 546
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 4 cut(s) 264, 349, 481, 555
TaaI ACNGT 1 cut(s) 620
TasI AATT 4 cut(s) 437, 493, 528, 646
TfiI GAWTC 2 cut(s) 13, 322
Tru1I TTAA 3 cut(s) 63, 441, 570
Tru9I TTAA 3 cut(s) 63, 441, 570
TseI GCWGC 2 cut(s) 254, 539
TspDTI ATGAA 1 cut(s) 615
TspGWI ACGGA 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 505
XapI RAATTY 2 cut(s) 437, 493
XceI RCATGY 1 cut(s) 537
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.