Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Forward (+)

2449434 .. 2451651

Gene Structure 2218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAACACTTCCCCAAAAATGGAAATGGAAATGAAAATGGAAACGAAGGCGGCTCCTGAAGCTGGTATGATCAAAAAGTCCAACGAGGAGTGGCGTACGGTTCTATCTCCTGAACAGTTTAAGATTCTTAGAGAGAAATCTATTGAAAAGAGAGGGTCAGGAGAATATGTGAAGTTGTTCGAGGAAGGAATCTACTGTTGTGTTGGTTGTGGAAATCCGGTTTATAAATCAACCACTAAATTCGATTCCGGTTGCGGTTGGCCGGCTTTTTTTGATGCTATTCCTGGCGCCATTAACCGAACCGAGGAGAGAGCTGGATTAAGATATGAGATAACTTGCACAAAATGTGATGGACATCTAGGTCATGTCTTAAAAAATGAAGGTTTTCCAACACCAACTGACGAACGCCATTGCGTCAACAGCGTTGCTCTCAAGTTCTCTTCCGCTATCACATCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007584 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009991 GO:0010035 GO:0016491 GO:0016667 GO:0016671 GO:0031667 GO:0033743 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

153

Amino Acids

17.1

Weight (kDa)

6.82

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	35 - 147	3.8e-41	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AasI	GACNNNNNNGTC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	3 cut(s)	50, 255, 444
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	3 cut(s)	19, 62, 304
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	2 cut(s)	62, 314
AluI	AGCT	2 cut(s)	62, 314
AoxI	GGCC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	2 cut(s)	176, 384
AspLEI	GCGC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	287
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	69
BfaI	CTAG	1 cut(s)	359
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	54, 289
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	416
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	2 cut(s)	217, 248
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 62, 304
Bse118I	RCCGGY	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	409
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	303
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	19, 62, 304
BseMI	GCAATG	1 cut(s)	409
BseRI	GAGGAG	2 cut(s)	101, 320
BshFI	GGCC	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	218, 249, 263
BsiWI	CGTACG	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	19, 62, 304
BsnI	GGCC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	3 cut(s)	50, 255, 444
BspANI	GGCC	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	54, 289
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	409
BsrFI	RCCGGY	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	3 cut(s)	100, 117, 197
Bst6I	CTCTTC	1 cut(s)	445
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	128, 456
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 420
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	262
CseI	GACGC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	5 cut(s)	53, 62, 262, 266, 314
CviKI_1	RGCY	5 cut(s)	53, 62, 262, 266, 314
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	2 cut(s)	128, 456
DinI	GGCGCC	1 cut(s)	289
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DrdI	GACNNNNNNGTC	1 cut(s)	360
DseDI	GACNNNNNNGTC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	283
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
FaeI	CATG	1 cut(s)	368
FaiI	YATR	5 cut(s)	68, 168, 225, 327, 366
FatI	CATG	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	3 cut(s)	218, 249, 263
HgaI	GACGC	1 cut(s)	403
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	124, 189, 245
HpaII	CCGG	3 cut(s)	218, 249, 263
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188III	TCNNGA	3 cut(s)	56, 110, 159
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	3 cut(s)	40, 179, 374
HpyCH4III	ACNGT	3 cut(s)	100, 117, 197
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 420
HpyF3I	CTNAG	2 cut(s)	128, 456
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	288
KasI	GGCGCC	1 cut(s)	287
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	58
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	359
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	1 cut(s)	432
MluCI	AATT	1 cut(s)	239
Mly113I	GGCGCC	1 cut(s)	288
MmeI	TCCRAC	2 cut(s)	105, 413
MnlI	CCTC	4 cut(s)	79, 146, 175, 298
MroNI	GCCGGC	1 cut(s)	262
MroXI	GAANNNNTTC	2 cut(s)	176, 384
MseI	TTAA	4 cut(s)	120, 294, 320, 371
MslI	CAYNNNNRTG	1 cut(s)	457
MspI	CCGG	3 cut(s)	218, 249, 263
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	59, 420
NaeI	GCCGGC	1 cut(s)	264
NarI	GGCGCC	1 cut(s)	288
NdeII	GATC	1 cut(s)	69
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	2 cut(s)	54, 289
PdiI	GCCGGC	1 cut(s)	264
PdmI	GAANNNNTTC	2 cut(s)	176, 384
PfeI	GAWTC	3 cut(s)	124, 189, 245
Pfl23II	CGTACG	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	52
PluTI	GGCGCC	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspLI	CGTACG	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	54, 289
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	457
SaqAI	TTAA	4 cut(s)	120, 294, 320, 371
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	4 cut(s)	64, 316, 364, 385
SfaNI	GCATC	1 cut(s)	265
SfoI	GGCGCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	3 cut(s)	50, 255, 444
SspDI	GGCGCC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	100, 117, 197
TaqI	TCGA	2 cut(s)	180, 243
TasI	AATT	1 cut(s)	239
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	3 cut(s)	124, 189, 245
Tru1I	TTAA	4 cut(s)	120, 294, 320, 371
Tru9I	TTAA	4 cut(s)	120, 294, 320, 371
TspDTI	ATGAA	3 cut(s)	17, 47, 393
XapI	RAATTY	1 cut(s)	239
XmnI	GAANNNNTTC	2 cut(s)	176, 384
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.