Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006023

Physical Location & Seq

Genomic Coordinates Reverse (-)

11591116 .. 11592425

Gene Structure 1310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCCAACATCAGCAACAGCGGTGGCTCCATCAACTGGATCTGTCCAGAAAAAAGATCAAGACTGGCGTGCGATTTTGTCTCCCGAGCAATTTAGAGTTCTCAGGGAAAAGGGCACAGAGAACCGAGGTAAAGGAGAGTATACCAAACTGTTCGACGACGGAATCTATAGTTGTGCTGGTTGTGCAACTCCTCTTTATAAGTCCACCACTAAGTTCGACTCTGGTTGTGGCTGGCCTTCCTTCTTCGATGCTATCCCTGGTGCCATTAAACAAACGCCCGAGGCAGGAGGGAGAAGAATGGAGATCACGTGCGCGGCATGTGACGGACATTTAGGTCATGTTGTCAAAGGAGAAGGTTTTCCCACAGCGACCGATGAGCGCCACTGCGTCAACAGTGTTTCTCTCAAGTTCTCTGAAATTTCCTCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007584 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009991 GO:0010035 GO:0016491 GO:0016667 GO:0016671 GO:0031667 GO:0033743 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

143

Amino Acids

15.41

Weight (kDa)

6.81

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	26 - 138	2.8e-43	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04800 AT4G04840 AT4G21830 AT4G21830 AT4G21840 AT4G21850 AT4G21850 AT4G21860 AT4G21860 AT4G21860 AT4G21860
fragaria_vesca	FvH4_2g11010 FvH4_2g11010
malus_domestica	MD05G1050500.v1.1 MD10G1058100.v1.1
prunus_persica	Prupe.8G076900_v2.0.a1
pyrus_communis	pycom10g04480
rosa_chinensis	RchiOBHm_Chr6g0269221
rosa_laevigata	RLG00000013871
rosa_multiflora	Rmu_sc0019533.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198930
rosa_rugosa	Rorug06G0046700
rosa_samantha	Rh6AG166400 Rh6BG172000 Rh6CG165500 Rh6DG157100
rosa_wichuraiana	Rw6G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AasI	GACNNNNNNGTC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	1 cut(s)	314
AciI	CCGC	2 cut(s)	20, 314
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	417
AcvI	CACGTG	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	35, 284
AjnI	CCWGG	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	46
Ama87I	CYCGRG	2 cut(s)	83, 278
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	314, 381
AvaI	CYCGRG	2 cut(s)	83, 278
BaeGI	GKGCMC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	260
BbrPI	CACGTG	1 cut(s)	309
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	382
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	258
BmeT110I	CYCGRG	2 cut(s)	83, 278
BmiI	GGNNCC	2 cut(s)	27, 262
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	124, 256, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 284
Bse1I	ACTGG	2 cut(s)	40, 68
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	3 cut(s)	124, 256, 279
BseLI	CCNNNNNNNGG	2 cut(s)	35, 284
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	2 cut(s)	40, 68
BseRI	GAGGAG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	372
BsiHKCI	CYCGRG	2 cut(s)	83, 278
BslI	CCNNNNNNNGG	2 cut(s)	35, 284
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	235
BsoBI	CYCGRG	2 cut(s)	83, 278
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	38, 55, 303
BspACI	CCGC	2 cut(s)	20, 314
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	2 cut(s)	27, 262
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	40, 68
BssECI	CCNNGG	3 cut(s)	124, 256, 279
BssMI	GATC	3 cut(s)	38, 55, 303
BssNAI	GTATAC	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	150, 395
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	69, 233
BstDEI	CTNAG	2 cut(s)	101, 210
BstFNI	CGCG	1 cut(s)	314
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	314, 381
BstKTI	GATC	3 cut(s)	41, 58, 306
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	3 cut(s)	38, 55, 303
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BstZ17I	GTATAC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	382, 400
Cac8I	GCNNGC	2 cut(s)	69, 233
CfoI	GCGC	2 cut(s)	314, 381
CseI	GACGC	1 cut(s)	376
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	2 cut(s)	318, 338
CviJI	RGCY	3 cut(s)	26, 231, 235
CviKI_1	RGCY	3 cut(s)	26, 231, 235
DdeI	CTNAG	2 cut(s)	101, 210
DpnI	GATC	3 cut(s)	40, 57, 305
DpnII	GATC	3 cut(s)	38, 55, 303
DrdI	GACNNNNNNGTC	1 cut(s)	333
DseDI	GACNNNNNNGTC	1 cut(s)	333
Eco72I	CACGTG	1 cut(s)	309
Eco88I	CYCGRG	2 cut(s)	83, 278
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	321, 341
FaiI	YATR	5 cut(s)	141, 168, 198, 319, 339
FatI	CATG	2 cut(s)	317, 337
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	315
GlaI	GCGC	2 cut(s)	313, 380
GluI	GCNGC	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	235
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	2 cut(s)	314, 381
Hin1II	CATG	2 cut(s)	321, 341
Hin6I	GCGC	2 cut(s)	312, 379
HinP1I	GCGC	2 cut(s)	312, 379
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	162, 218
Hpy166II	GTNNAC	3 cut(s)	141, 204, 391
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	3 cut(s)	46, 59, 83
Hpy8I	GTNNAC	3 cut(s)	141, 204, 391
Hpy99I	CGWCG	2 cut(s)	158, 161
HpyAV	CCTTC	3 cut(s)	246, 250, 347
HpyCH4III	ACNGT	2 cut(s)	150, 395
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	101, 210
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	2 cut(s)	321, 341
HspAI	GCGC	2 cut(s)	312, 379
Kzo9I	GATC	3 cut(s)	38, 55, 303
LmnI	GCTCC	1 cut(s)	31
LweI	GCATC	1 cut(s)	238
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	3 cut(s)	40, 57, 305
MboI	GATC	3 cut(s)	38, 55, 303
MboII	GAAGA	2 cut(s)	235, 306
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	2 cut(s)	89, 417
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	4 cut(s)	119, 201, 274, 281
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	3 cut(s)	38, 55, 303
NlaIII	CATG	2 cut(s)	321, 341
NlaIV	GGNNCC	2 cut(s)	27, 262
NmuCI	GTSAC	1 cut(s)	320
NspI	RCATGY	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	212
PmaCI	CACGTG	1 cut(s)	309
PmlI	CACGTG	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	309
PsiI	TTATAA	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	256
PspCI	CACGTG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	27, 262
PsuI	RGATCY	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	3 cut(s)	38, 55, 303
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	4 cut(s)	130, 311, 337, 358
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	89, 417
SsiI	CCGC	2 cut(s)	20, 314
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	150, 395
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	3 cut(s)	153, 216, 246
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	89, 417
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	2 cut(s)	389, 400
TseFI	GTSAC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	320
TspGWI	ACGGA	2 cut(s)	174, 339
TspRI	CASTG	2 cut(s)	389, 400
Van91I	CCANNNNNTGG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	417
XceI	RCATGY	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.