Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Forward (+)

6780449 .. 6784632

Gene Structure 4184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3402 bp

ATGGTGTCAGAGACGACGACGAACCGATCAACGGTTAAAATCTCAAACGTTCCTCAAACCATAGTCGCCGACGAACTCCTCCGGTTCTTAGAACTCCACCTCGGCGAAGATACTGTATTCGCACTCGAAATCCCAACAACTCGTGACAATTGGAAGCCAAGAGACTTCGCTCGAGTACAATTCACTACCCTCGAAGTCAAATCTCGAGCCCAGCTTCTCTCTTCTCAAAGCAAGCTCCTTTTCAAAACCCATAACCTAAGACTCTCTGAAGCTTATGATGATATCATCCCTCGTCCTGTAGATCCAAGGAAAAGGCTAGACGACATCGTTTTGACTGTTGGGTTTCCTGAGTCTGATGAAAAAAGGTTTTGTGCCCTAGAAAAATGGGATGGTGTGAGGTGTTGGATTTTGACTGAGAAGAGAAGAGTTGAGTTTTGGGTTTGGGAAAGTGGTGATTGTTATAAGATTGAAGTTAGGTTTGAGGATATTATTGAAACTCTTAGTTGTTGTGTTAATGGTGACGCTTCTGAGATTGATGCATTTCTTCTCAAGCTGAAATATGGACCGAAGGTATTTAAAAGAGTAACAGTTCACATAGCCACAAAGTTTAAGTCTGATCGGTACAGATTCTGCAAGGAGGATTTTGATTTCATGTGGATTCGGACAACTGATTTCTCTGGTTCGAAATCAATTGGTACATCAACTTGCTTTTGTTTGGAAGTCCACAATGGCTCAACGATGTTAGACATTTTCTCGGGCTTACCTTACTACCGAGAAGACACTTTGAGTCTAACTTATGTGGATGGGAAGACCTTTGCTTCTGCAGCTCAAATTGTTCCCCTCTTGAATGCCGCCATTTTGGGGTTAGAGTTTCCATATGAGATCCTTTTCCAACTCAATGCGCTTGTTCATGCGCAGAAAATCAGTCTTTTTGCTGCGTCAGATATGGAACTGATCAAAATCCTTCGTGGTATGAGTTTGGAAACCGCATTGGTGATCCTCAAGAAACTTCACCAGCAAAGTTCTATATGTTATGATCCTGTCTTCTTTGTCAAGACTCAGATGCAATCTGTGGTTAAGAAGATGAAGCATTCCCCTGCATCAGCTTATAAAAGATTGACCGAGCAGAACATCATGAGTTGTCAGAGAGCTTACGTTACACCCTCAAAGATCTATCTGTTGGGTCCAGAGCTTGAGACTGCAAATTATGTTGTGAAGAACTTTGCAGAGCATGTCTCGGATTTCATGAGAGTTACTTTTGTGGAAGAAGATTGGAGCAAGCTTCCCGCAAATGCTCTCTCTGTGAACTCCAAGGAAGGCTATTTTGTGAAGCCCTCTAGAACCAACATTTATAACAGGGTGTTGTCAATCCTTGGAGAAGGGATTACCGTTGGGCCTAAGAGGTTTGAGTTCTTGGCTTTTTCAGCGAGCCAACTGCGAGGAAATTCGGTCTGGATGTTTGCTTCTAACGAGAAAGTAAAAGCGGAAGATATAAGAGAATGGATGGGTTGTTTCCGTAAAATCCGAAGCATTTCCAAATGTGCTGCTAGGATGGGTCAGTTGTTCAGTGCTTCGCGGCAAACACTTATTGTCCGTGCACAAGATGTGGAGCAGATTCCCGACATCGAAGTGACAACTGATGGTGCTGATTACTGCTTCTCGGATGGCATTGGGAAAATTTCACTTGCATTTGCCAAGCAAGTTGCACAGAAGTGTGGATTGAGTCATGTCCCTTCTGCCTTTCAAATTCGATACGGTGGCTACAAAGGTGTGATTGCTGTTGACCGCAGTTCCTTCCGAAAGTTGTCTCTGCGTGATAGTATGCTTAAATTTGACTCGAACAACAGGATGCTGAACGTTACCAGGTGGACAGAGTCGATGCCTTGCTTCTTAAACCGGGAGATCATTTGCCTTTTGTCGACCCTTGGAATAGAAGATGCAATGTTTGAGGCGATGCAAGCGGTGCATTTATCTATGCTTGGGAATATGCTTGAAGACCGCGATGCAGCACTTAATGTTCTGCAGAAATTGAGCGGAGAAAATTCCAAGAATTTGCTAGTTAAGATGCTGCTTCAAGGATATGCACCGAGTTCAGAACCTTACCTCTCAATGATGCTTCGTGTGCACCACGAGAGCCAGCTTTCTGAACTAAAGAGCAGATGCAGGATACTTGTACCGAAAGGACGGATCTTGATCGGTTGCATGGATGAAATGGGTATCCTGGAGTATGGCCAAGTGTATGTTCGTGTAACCCTGACTAAAGCGGAACTGAAATCTCGCGATCAGAGCTACTTTCGCAAGATTGATGAGGAAACATCTGTGGTTATTGGGAAAGTGGTCGTGACGAAAAACCCATGTCTTCACCCTGGAGATATTAGAGTTCTTGATGCTATATATGAGGTCCATTTCGAAGAAAAGGGATATCTCGACTGCATCATCTTTCCTCAGAAGGGAGAAAGACCACATCCAAATGAATGTTCTGGTGGCGATCTCGACGGAGACCAGTTTTTTGTTAGCTGGGATGAGAAGATTATACCTAGCGAAATGGACCCTCCAATGGACTATGCTGGAAGCAGGCCTCGTCTAATGGATCATGACGTCACGTTAGAGGAAATCCACAAATTTTTTGTGGATTATATGATAAGCGACACGCTTGGGGTGATCTCAACTGCACATTTGGTTCACGCAGACCGTGACCCTGAAAAAGCCCGGAGCCAGAAGTGTCTAGAGTTAGCAAATCTTCACTCTAGGGCTGTTGATTTTGCAAAAACTGGAGCTCCAGCTGAGATGCCTTATGCCTTAAAGCCCAGAGAGTTCCCTGATTTTCTGGAACGGTTTGAGAAACCAACATACATCTCTGAGTCTGTGTTTGGGAAACTATACCGTGCTGTGAAGAGCTCTCTAGCACAGAGAAAGCCAGAAGCTGAGAGCGAGGACACGGTAGCTTATGATGTGACACTTGAAGAAGCTGGCTTTGAGAGCTTTATAGAGACAGCGAAAGCCCATAGAGACATGTATGGTGAGAAACTGACCTCGTTGATGATATACTATGGAGCTGCTAACGAAGAGGAGATTCTCACAGGCATTTTGAAAACCAAGGAGATGTATCTGGCGAGAGATAACCGGAGGTATGGTGATATGAAGGATAGAATTACGCTTTCCGTGAAAGATTTGCATAAAGAGGCCATGGGATGGTTCGAGAAAAGCTGCGAGGACGAACAACAGAAGAAGAAGCTAGCATCGGCGTGGTACTATGTAACATACAATCCAAACCATCGCGATGAGAAGTTGACATTCTTGAGTTTCCCATGGATCGTAGGTGACGTTTTGCTTGATATAAAGGCTGAAAATGCACAGAGACAGAGCGTTGAAGAGAAAACAAGTGGACTTGTATCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1133

Amino Acids

129.32

Weight (kDa)

6.23

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	11 - 94	2.3e-41	RdRP1/2, RRM domain
PH_RDR2	PF24823	111 - 264	8.8e-57	RDR2 PH-like domain
RdRP_helical	PF26252	280 - 365	8.1e-27	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	386 - 964	5.9e-184	RNA dependent RNA polymerase
RdRP_head	PF26253	982 - 1132	7.6e-53	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	462, 1110, 1353
AatII	GACGTC	1 cut(s)	2601
Acc16I	TGCGCA	1 cut(s)	915
AccB7I	CCANNNNNTGG	1 cut(s)	3192
AccBSI	CCGCTC	1 cut(s)	2034
AccI	GTMKAC	1 cut(s)	1919
AccII	CGCG	4 cut(s)	1576, 2001, 2280, 3279
AclI	AACGTT	2 cut(s)	48, 1857
AclWI	GGATC	7 cut(s)	296, 877, 991, 1031, 2195, 2598, 3320
AcoI	YGGCCR	1 cut(s)	2230
AcsI	RAATTY	7 cut(s)	1444, 1677, 1746, 1829, 2041, 2050, 2621
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	2598
AfaI	GTAC	5 cut(s)	177, 623, 697, 2175, 3251
AfiI	CCNNNNNNNGG	5 cut(s)	31, 861, 2450, 2557, 3192
AflIII	ACRYGT	1 cut(s)	3012
AjnI	CCWGG	3 cut(s)	1862, 2220, 2365
AjuI	GAANNNNNNNTTGG	4 cut(s)	2226, 2258, 2461, 2493
AleI	CACNNNNGTG	1 cut(s)	1711
Alw21I	GWGCWC	4 cut(s)	1600, 2127, 2779, 2900
Alw26I	GTCTC	9 cut(s)	5, 156, 1190, 1240, 1812, 2493, 2984, 3003, 3352
Alw44I	GTGCAC	2 cut(s)	1596, 2123
AlwI	GGATC	7 cut(s)	296, 877, 991, 1031, 2195, 2598, 3320
AlwNI	CAGNNNCTG	2 cut(s)	630, 2924
Ama87I	CYCGRG	3 cut(s)	171, 204, 754
AoxI	GGCC	4 cut(s)	1394, 2230, 2576, 3183
ApaLI	GTGCAC	2 cut(s)	1596, 2123
ApeKI	GCWGC	7 cut(s)	824, 935, 1544, 2006, 2068, 3056, 3207
ApoI	RAATTY	7 cut(s)	1444, 1677, 1746, 1829, 2041, 2050, 2621
ArsI	GACNNNNNNTTYG	4 cut(s)	596, 628, 2492, 2524
Asp700I	GAANNNNTTC	1 cut(s)	1531
AspLEI	GCGC	2 cut(s)	904, 916
AspS9I	GGNCC	5 cut(s)	563, 1184, 1394, 2401, 2548
AsuC2I	CCSGG	2 cut(s)	1898, 2710
AsuHPI	GGTGA	9 cut(s)	464, 530, 1004, 1006, 2354, 2671, 3032, 3146, 3332
AsuII	TTCGAA	2 cut(s)	683, 2409
AsuNHI	GCTAGC	1 cut(s)	3235
AvaI	CYCGRG	3 cut(s)	171, 204, 754
AvaII	GGWCC	4 cut(s)	563, 1184, 2401, 2548
BaeGI	GKGCMC	3 cut(s)	376, 1600, 2127
BalI	TGGCCA	1 cut(s)	2232
BanII	GRGCYC	3 cut(s)	211, 2779, 2900
BauI	CACGAG	2 cut(s)	141, 2129
BbsI	GAAGAC	5 cut(s)	783, 815, 1036, 2001, 2351
Bbv12I	GWGCWC	4 cut(s)	1600, 2127, 2779, 2900
BbvI	GCAGC	7 cut(s)	836, 922, 1531, 2018, 2055, 3043, 3194
BccI	CCATC	8 cut(s)	383, 797, 1498, 1546, 1634, 1658, 3186, 3282
BcgI	CGANNNNNNTGC	2 cut(s)	1417, 1451
BciT130I	CCWGG	3 cut(s)	1864, 2222, 2367
BciVI	GTATCC	2 cut(s)	2160, 2228
BclI	TGATCA	1 cut(s)	954
BcnI	CCSGG	2 cut(s)	1898, 2710
BcoDI	GTCTC	9 cut(s)	5, 156, 1190, 1240, 1812, 2493, 2984, 3003, 3352
BfmI	CTRYAG	3 cut(s)	297, 822, 2021
BfuI	GTATCC	2 cut(s)	2160, 2228
BglII	AGATCT	1 cut(s)	1170
BisI	GCNGC	9 cut(s)	825, 852, 936, 1545, 1577, 2007, 2069, 3057, 3208
BlsI	GCNGC	9 cut(s)	826, 853, 937, 1546, 1578, 2008, 2070, 3058, 3209
Bme1390I	CCNGG	5 cut(s)	1864, 1898, 2222, 2367, 2710
Bme18I	GGWCC	4 cut(s)	563, 1184, 2401, 2548
BmeT110I	CYCGRG	3 cut(s)	171, 204, 754
BmgT120I	GGNCC	5 cut(s)	563, 1184, 1394, 2401, 2548
BmiI	GGNNCC	3 cut(s)	1185, 2550, 2714
BmrFI	CCNGG	5 cut(s)	1864, 1898, 2222, 2367, 2710
BmtI	GCTAGC	1 cut(s)	3239
BpiI	GAAGAC	5 cut(s)	783, 815, 1036, 2001, 2351
BplI	GAGNNNNNCTC	2 cut(s)	1220, 1252
BpmI	CTGGAG	4 cut(s)	2243, 2388, 2763, 2793
Bpu14I	TTCGAA	2 cut(s)	683, 2409
BpuEI	CTTGAG	4 cut(s)	533, 986, 1214, 3319
BpuMI	CCSGG	2 cut(s)	1898, 2710
BsaBI	GATNNNNATC	2 cut(s)	959, 2192
BsaHI	GRCGYC	1 cut(s)	2598
BsaI	GGTCTC	1 cut(s)	2493
BsaJI	CCNNGG	9 cut(s)	100, 305, 1311, 1372, 1924, 2365, 3096, 3186, 3308
BsaWI	WCCGGW	2 cut(s)	81, 3123
BsaXI	ACNNNNNCTCC	4 cut(s)	2761, 2791, 3118, 3148
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 861, 2450, 2557, 3192
Bse1I	ACTGG	2 cut(s)	2503, 2776
Bse3DI	GCAATG	1 cut(s)	1947
Bse8I	GATNNNNATC	2 cut(s)	959, 2192
BseBI	CCWGG	3 cut(s)	1864, 2222, 2367
BseDI	CCNNGG	9 cut(s)	100, 305, 1311, 1372, 1924, 2365, 3096, 3186, 3308
BseJI	GATNNNNATC	2 cut(s)	959, 2192
BseLI	CCNNNNNNNGG	5 cut(s)	31, 861, 2450, 2557, 3192
BseMI	GCAATG	1 cut(s)	1947
BseMII	CTCAG	8 cut(s)	339, 405, 519, 1073, 2459, 2775, 2850, 2916
BseNI	ACTGG	2 cut(s)	2503, 2776
BseRI	GAGGAG	2 cut(s)	68, 3083
BseSI	GKGCMC	3 cut(s)	376, 1600, 2127
BseXI	GCAGC	7 cut(s)	836, 922, 1531, 2018, 2055, 3043, 3194
BseYI	CCCAGC	2 cut(s)	210, 2517
BsgI	GTGCAG	1 cut(s)	2655
Bsh1236I	CGCG	4 cut(s)	1576, 2001, 2280, 3279
BshFI	GGCC	4 cut(s)	1396, 2232, 2578, 3185
BsiHKAI	GWGCWC	4 cut(s)	1600, 2127, 2779, 2900
BsiHKCI	CYCGRG	3 cut(s)	171, 204, 754
BsiSI	CCGG	4 cut(s)	82, 1897, 2710, 3124
BslFI	GGGAC	1 cut(s)	1715
BslI	CCNNNNNNNGG	5 cut(s)	31, 861, 2450, 2557, 3192
BsmAI	GTCTC	9 cut(s)	5, 156, 1190, 1240, 1812, 2493, 2984, 3003, 3352
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	1715
BsmI	GAATGC	2 cut(s)	853, 1090
BsnI	GGCC	4 cut(s)	1396, 2232, 2578, 3185
Bso31I	GGTCTC	1 cut(s)	2493
BsoBI	CYCGRG	3 cut(s)	171, 204, 754
Bsp119I	TTCGAA	2 cut(s)	683, 2409
Bsp1286I	GDGCHC	6 cut(s)	211, 376, 1600, 2127, 2779, 2900
Bsp19I	CCATGG	2 cut(s)	3186, 3308
Bsp68I	TCGCGA	2 cut(s)	2280, 3279
BspANI	GGCC	4 cut(s)	1396, 2232, 2578, 3185
BspCNI	CTCAG	8 cut(s)	340, 406, 520, 1072, 2458, 2776, 2851, 2917
BspFNI	CGCG	4 cut(s)	1576, 2001, 2280, 3279
BspHI	TCATGA	3 cut(s)	1134, 1245, 2593
BspLI	GGNNCC	3 cut(s)	1185, 2550, 2714
BspMAI	CTGCAG	2 cut(s)	826, 2025
BspOI	GCTAGC	1 cut(s)	3239
BspPI	GGATC	7 cut(s)	296, 877, 991, 1031, 2195, 2598, 3320
BspQI	GCTCTTC	1 cut(s)	2888
BspT104I	TTCGAA	2 cut(s)	683, 2409
BspTNI	GGTCTC	1 cut(s)	2493
BsrBI	CCGCTC	1 cut(s)	2034
BsrDI	GCAATG	1 cut(s)	1947
BsrI	ACTGG	2 cut(s)	2503, 2776
BssECI	CCNNGG	9 cut(s)	100, 305, 1311, 1372, 1924, 2365, 3096, 3186, 3308
BssNI	GRCGYC	1 cut(s)	2598
BssSI	CACGAG	2 cut(s)	141, 2129
BssT1I	CCWWGG	7 cut(s)	305, 1311, 1372, 1924, 3096, 3186, 3308
Bst2BI	CACGAG	2 cut(s)	141, 2129
Bst2UI	CCWGG	3 cut(s)	1864, 2222, 2367
Bst6I	CTCTTC	6 cut(s)	226, 413, 418, 2888, 3060, 3366
BstACI	GRCGYC	1 cut(s)	2598
BstAPI	GCANNNNNTGC	1 cut(s)	1963
BstBI	TTCGAA	2 cut(s)	683, 2409
BstC8I	GCNNGC	8 cut(s)	233, 1280, 1429, 1959, 2138, 2576, 2971, 3237
BstDSI	CCRYGG	2 cut(s)	3186, 3308
BstFNI	CGCG	4 cut(s)	1576, 2001, 2280, 3279
BstHHI	GCGC	2 cut(s)	904, 916
BstMAI	GTCTC	9 cut(s)	5, 156, 1190, 1240, 1812, 2493, 2984, 3003, 3352
BstMWI	GCNNNNNNNGC	9 cut(s)	824, 1424, 1958, 1963, 2122, 2286, 2295, 2979, 3350
BstNI	CCWGG	3 cut(s)	1864, 2222, 2367
BstNSI	RCATGY	2 cut(s)	1235, 3016
BstSCI	CCNGG	5 cut(s)	1862, 1896, 2220, 2365, 2708
BstSFI	CTRYAG	3 cut(s)	297, 822, 2021
BstSLI	GKGCMC	3 cut(s)	376, 1600, 2127
BstUI	CGCG	4 cut(s)	1576, 2001, 2280, 3279
BstV1I	GCAGC	7 cut(s)	836, 922, 1531, 2018, 2055, 3043, 3194
BstV2I	GAAGAC	5 cut(s)	783, 815, 1036, 2001, 2351
BstX2I	RGATCY	4 cut(s)	301, 882, 1170, 2187
BstYI	RGATCY	4 cut(s)	301, 882, 1170, 2187
BsuI	GTATCC	2 cut(s)	2160, 2228
BsuRI	GGCC	4 cut(s)	1396, 2232, 2578, 3185
BtgI	CCRYGG	2 cut(s)	3186, 3308
BtgZI	GCGATG	4 cut(s)	1967, 2016, 3260, 3294
BtsIMutI	CAGTG	1 cut(s)	1573
BtuMI	TCGCGA	2 cut(s)	2280, 3279
Cac8I	GCNNGC	8 cut(s)	233, 1280, 1429, 1959, 2138, 2576, 2971, 3237
CaiI	CAGNNNCTG	2 cut(s)	630, 2924
CciI	TCATGA	3 cut(s)	1134, 1245, 2593
CfoI	GCGC	2 cut(s)	904, 916
Cfr13I	GGNCC	5 cut(s)	563, 1184, 1394, 2401, 2548
CseI	GACGC	2 cut(s)	530, 927
CsiI	ACCWGGT	1 cut(s)	1862
Csp6I	GTAC	5 cut(s)	176, 622, 696, 2174, 3250
CviQI	GTAC	5 cut(s)	176, 622, 696, 2174, 3250
DraI	TTTAAA	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	2230
Eam1104I	CTCTTC	6 cut(s)	226, 413, 418, 2888, 3060, 3366
EarI	CTCTTC	6 cut(s)	226, 413, 418, 2888, 3060, 3366
Ecl136II	GAGCTC	2 cut(s)	2777, 2898
Eco130I	CCWWGG	7 cut(s)	305, 1311, 1372, 1924, 3096, 3186, 3308
Eco147I	AGGCCT	1 cut(s)	2578
Eco24I	GRGCYC	3 cut(s)	211, 2779, 2900
Eco31I	GGTCTC	1 cut(s)	2493
Eco32I	GATATC	2 cut(s)	283, 2423
Eco47I	GGWCC	4 cut(s)	563, 1184, 2401, 2548
Eco53kI	GAGCTC	2 cut(s)	2777, 2898
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	3 cut(s)	171, 204, 754
EcoICRI	GAGCTC	2 cut(s)	2777, 2898
EcoRII	CCWGG	3 cut(s)	1862, 2220, 2365
EcoRV	GATATC	2 cut(s)	283, 2423
EcoT14I	CCWWGG	7 cut(s)	305, 1311, 1372, 1924, 3096, 3186, 3308
EcoT22I	ATGCAT	1 cut(s)	541
EcoT38I	GRGCYC	3 cut(s)	211, 2779, 2900
ErhI	CCWWGG	7 cut(s)	305, 1311, 1372, 1924, 3096, 3186, 3308
Esp3I	CGTCTC	1 cut(s)	5
FaqI	GGGAC	1 cut(s)	1715
FauI	CCCGC	1 cut(s)	1294
FauNDI	CATATG	1 cut(s)	877
FbaI	TGATCA	1 cut(s)	954
FblI	GTMKAC	1 cut(s)	1919
Fnu4HI	GCNGC	9 cut(s)	825, 852, 936, 1545, 1577, 2007, 2069, 3057, 3208
FriOI	GRGCYC	3 cut(s)	211, 2779, 2900
Fsp4HI	GCNGC	9 cut(s)	825, 852, 936, 1545, 1577, 2007, 2069, 3057, 3208
FspI	TGCGCA	1 cut(s)	915
GlaI	GCGC	2 cut(s)	903, 915
GluI	GCNGC	9 cut(s)	825, 852, 936, 1545, 1577, 2007, 2069, 3057, 3208
GsaI	CCCAGC	2 cut(s)	214, 2521
GsuI	CTGGAG	4 cut(s)	2243, 2388, 2763, 2793
HaeIII	GGCC	4 cut(s)	1396, 2232, 2578, 3185
HapII	CCGG	4 cut(s)	82, 1897, 2710, 3124
HgaI	GACGC	2 cut(s)	530, 927
HhaI	GCGC	2 cut(s)	904, 916
Hin1I	GRCGYC	1 cut(s)	2598
Hin6I	GCGC	2 cut(s)	902, 914
HinP1I	GCGC	2 cut(s)	902, 914
HincII	GTYRAC	3 cut(s)	1783, 1920, 3291
HindII	GTYRAC	3 cut(s)	1783, 1920, 3291
HindIII	AAGCTT	2 cut(s)	270, 1280
HpaII	CCGG	4 cut(s)	82, 1897, 2710, 3124
HphI	GGTGA	9 cut(s)	464, 530, 1004, 1006, 2354, 2671, 3032, 3146, 3332
Hpy99I	CGWCG	4 cut(s)	19, 22, 74, 2498
HpyAV	CCTTC	8 cut(s)	562, 974, 1310, 1373, 1743, 1804, 2443, 3136
HpyCH4IV	ACGT	6 cut(s)	48, 1155, 1857, 2598, 2603, 3324
HpyF10VI	GCNNNNNNNGC	9 cut(s)	824, 1424, 1958, 1963, 2122, 2286, 2295, 2979, 3350
HpySE526I	ACGT	6 cut(s)	48, 1155, 1857, 2598, 2603, 3324
Hsp92I	GRCGYC	1 cut(s)	2598
HspAI	GCGC	2 cut(s)	902, 914
Ksp22I	TGATCA	1 cut(s)	954
LguI	GCTCTTC	1 cut(s)	2888
LmnI	GCTCC	7 cut(s)	240, 1275, 1609, 2712, 2774, 2782, 3053
Lsp1109I	GCAGC	7 cut(s)	836, 922, 1531, 2018, 2055, 3043, 3194
MabI	ACCWGGT	1 cut(s)	1862
MaeII	ACGT	6 cut(s)	48, 1155, 1857, 2598, 2603, 3324
MbiI	CCGCTC	1 cut(s)	2034
MfeI	CAATTG	2 cut(s)	148, 690
MflI	RGATCY	4 cut(s)	301, 882, 1170, 2187
MhlI	GDGCHC	6 cut(s)	211, 376, 1600, 2127, 2779, 2900
MlsI	TGGCCA	1 cut(s)	2232
MluNI	TGGCCA	1 cut(s)	2232
MlyI	GAGTC	8 cut(s)	255, 359, 796, 1051, 1732, 1829, 1883, 2870
MmeI	TCCRAC	2 cut(s)	383, 916
Mox20I	TGGCCA	1 cut(s)	2232
Mph1103I	ATGCAT	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	1531
MscI	TGGCCA	1 cut(s)	2232
MslI	CAYNNNNRTG	5 cut(s)	1628, 1711, 2469, 3244, 3279
Msp20I	TGGCCA	1 cut(s)	2232
MspA1I	CMGCKG	1 cut(s)	2783
MspI	CCGG	4 cut(s)	82, 1897, 2710, 3124
MspR9I	CCNGG	5 cut(s)	1864, 1898, 2222, 2367, 2710
MunI	CAATTG	2 cut(s)	148, 690
Mva1269I	GAATGC	2 cut(s)	853, 1090
MvaI	CCWGG	3 cut(s)	1864, 2222, 2367
MvnI	CGCG	4 cut(s)	1576, 2001, 2280, 3279
MwoI	GCNNNNNNNGC	9 cut(s)	824, 1424, 1958, 1963, 2122, 2286, 2295, 2979, 3350
NciI	CCSGG	2 cut(s)	1898, 2710
NcoI	CCATGG	2 cut(s)	3186, 3308
NdeI	CATATG	1 cut(s)	877
NheI	GCTAGC	1 cut(s)	3235
NlaIV	GGNNCC	3 cut(s)	1185, 2550, 2714
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	8 cut(s)	143, 518, 1630, 2341, 2599, 2693, 2953, 3320
NruI	TCGCGA	2 cut(s)	2280, 3279
NsbI	TGCGCA	1 cut(s)	915
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	2 cut(s)	1235, 3016
NspV	TTCGAA	2 cut(s)	683, 2409
OliI	CACNNNNGTG	1 cut(s)	1711
PaeR7I	CTCGAG	2 cut(s)	171, 204
PagI	TCATGA	3 cut(s)	1134, 1245, 2593
PceI	AGGCCT	1 cut(s)	2578
PciI	ACATGT	1 cut(s)	3012
PciSI	GCTCTTC	1 cut(s)	2888
PcsI	WCGNNNNNNNCGW	1 cut(s)	3321
PctI	GAATGC	2 cut(s)	853, 1090
PdmI	GAANNNNTTC	1 cut(s)	1531
PfeI	GAWTC	4 cut(s)	627, 658, 1615, 3073
PflFI	GACNNNGTC	1 cut(s)	1873
PflMI	CCANNNNNTGG	1 cut(s)	3192
PfoI	TCCNGGA	1 cut(s)	2220
PkrI	GCNGC	9 cut(s)	826, 853, 937, 1546, 1578, 2008, 2070, 3058, 3209
PleI	GAGTC	8 cut(s)	255, 358, 795, 1051, 1731, 1829, 1882, 2869
PpsI	GAGTC	8 cut(s)	255, 358, 795, 1051, 1731, 1829, 1882, 2869
PscI	ACATGT	1 cut(s)	3012
PsiI	TTATAA	3 cut(s)	462, 1110, 1353
Psp124BI	GAGCTC	2 cut(s)	2779, 2900
Psp1406I	AACGTT	2 cut(s)	48, 1857
Psp6I	CCWGG	3 cut(s)	1862, 2220, 2365
PspFI	CCCAGC	2 cut(s)	210, 2517
PspGI	CCWGG	3 cut(s)	1862, 2220, 2365
PspN4I	GGNNCC	3 cut(s)	1185, 2550, 2714
PspPI	GGNCC	5 cut(s)	563, 1184, 1394, 2401, 2548
PspXI	VCTCGAGB	1 cut(s)	171
PstI	CTGCAG	2 cut(s)	826, 2025
PstNI	CAGNNNCTG	2 cut(s)	630, 2924
PsuI	RGATCY	4 cut(s)	301, 882, 1170, 2187
PsyI	GACNNNGTC	1 cut(s)	1873
PvuII	CAGCTG	1 cut(s)	2783
RruI	TCGCGA	2 cut(s)	2280, 3279
RsaI	GTAC	5 cut(s)	177, 623, 697, 2175, 3251
RsaNI	GTAC	5 cut(s)	176, 622, 696, 2174, 3250
RseI	CAYNNNNRTG	5 cut(s)	1628, 1711, 2469, 3244, 3279
SacI	GAGCTC	2 cut(s)	2779, 2900
SalI	GTCGAC	1 cut(s)	1918
SapI	GCTCTTC	1 cut(s)	2888
SatI	GCNGC	9 cut(s)	825, 852, 936, 1545, 1577, 2007, 2069, 3057, 3208
Sau96I	GGNCC	5 cut(s)	563, 1184, 1394, 2401, 2548
SchI	GAGTC	8 cut(s)	255, 359, 796, 1051, 1732, 1829, 1883, 2870
ScrFI	CCNGG	5 cut(s)	1864, 1898, 2222, 2367, 2710
SduI	GDGCHC	6 cut(s)	211, 376, 1600, 2127, 2779, 2900
SexAI	ACCWGGT	1 cut(s)	1862
SfcI	CTRYAG	3 cut(s)	297, 822, 2021
Sfr274I	CTCGAG	2 cut(s)	171, 204
SfuI	TTCGAA	2 cut(s)	683, 2409
SinI	GGWCC	4 cut(s)	563, 1184, 2401, 2548
SlaI	CTCGAG	2 cut(s)	171, 204
SmiMI	CAYNNNNRTG	5 cut(s)	1628, 1711, 2469, 3244, 3279
SmlI	CTYRAG	6 cut(s)	171, 204, 548, 1001, 1193, 3298
SmoI	CTYRAG	6 cut(s)	171, 204, 548, 1001, 1193, 3298
SseBI	AGGCCT	1 cut(s)	2578
SstI	GAGCTC	2 cut(s)	2779, 2900
StuI	AGGCCT	1 cut(s)	2578
StyD4I	CCNGG	5 cut(s)	1862, 1896, 2220, 2365, 2708
StyI	CCWWGG	7 cut(s)	305, 1311, 1372, 1924, 3096, 3186, 3308
TaiI	ACGT	6 cut(s)	51, 1158, 1860, 2601, 2606, 3327
TaqII	GACCGA	3 cut(s)	580, 1136, 1438
TatI	WGTACW	1 cut(s)	175
TauI	GCSGC	2 cut(s)	854, 1579
TfiI	GAWTC	4 cut(s)	627, 658, 1615, 3073
TscAI	CASTG	1 cut(s)	1573
TseFI	GTSAC	8 cut(s)	143, 518, 1630, 2341, 2599, 2693, 2953, 3320
TseI	GCWGC	7 cut(s)	824, 935, 1544, 2006, 2068, 3056, 3207
Tsp45I	GTSAC	8 cut(s)	143, 518, 1630, 2341, 2599, 2693, 2953, 3320
TspDTI	ATGAA	8 cut(s)	372, 640, 899, 1100, 1234, 2223, 2487, 3155
TspGWI	ACGGA	5 cut(s)	1505, 1583, 2200, 2511, 3151
TspRI	CASTG	1 cut(s)	1573
Tth111I	GACNNNGTC	1 cut(s)	1873
Van91I	CCANNNNNTGG	1 cut(s)	3192
VneI	GTGCAC	2 cut(s)	1596, 2123
VpaK11BI	GGWCC	4 cut(s)	563, 1184, 2401, 2548
XapI	RAATTY	7 cut(s)	1444, 1677, 1746, 1829, 2041, 2050, 2621
XbaI	TCTAGA	2 cut(s)	1337, 2725
XceI	RCATGY	2 cut(s)	1235, 3016
XhoI	CTCGAG	2 cut(s)	171, 204
XmiI	GTMKAC	1 cut(s)	1919
XmnI	GAANNNNTTC	1 cut(s)	1531
ZraI	GACGTC	1 cut(s)	2599
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.