Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Forward (+)

1019501 .. 1021369

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0012900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCAGATCAGAAAGCAGAAATCTTTGAACTCAACAATGGCACCATGCGAGTCCTCATCTCCAACCTGGGCTGCACCATCACCTCCCTGTCCGTTCCTGGCAAAGACGGAAAATCGGCTGATGTTGTTCTTGGATTCGACTCTGTTGAGCCCTATTTGAAAGGGCTGGCTCCTTATTTTGGCTGCATTGTGGGCCGGGTCGCCAATAGGATCAAGGATGGCAAGTTTACACTCAATGGAACTGACTACTCTGTGTCTCTCAACAGGCCTCCAAACAGTCTCCATGGTGGTAACAAGGGTTATGACAAGCAGATATGGCAGGTAGCCGAACATAAGAAGGGCGACAAGCCATCCATTACTTTCAAATATCATAGTCATGATGGGGAGGAAGGTTACCCCGGGAGTGTTTCTGTGACTGCAACTTATACACTTACTTCAAGCACTACCATGCGACTCGACATGGAAGCAGTGCCTGAGAACAAGCCTACCCCTATCAGCTTAGCTCAGCACACTTACTGGAACTTGGCTGGCCATAACTCAGGCGACGTACTTGACCACAGAGTTCAAATATGGGCTAACCACATTACCCCTGTGGATGAAAACACAGTTCCCACAGGTGAAATCATGCCAGTTAAAGGCACCCCCTTTGATTTCACTGCTGAGAGGAGGGTCGGTGAGTCCATCCATGAGGTTGGACTAGGGTACGATCACAACTATGTGCTTGATTGTGGGGAAGAGAAGGAAGGTTTGAAACATGCTGCTAAAGTGAGAGACCCTTCCAGCTCAAGGGTCCTTAACCTATGGAGCAATGCCCCTGGGATGCAGTTTTACACTGGGAATTATGTCGATTGTGTTCAAGGTAAAGCAGGTGCTGTTTATAATAAGCATGCAGGGCTCTGCTTGGAGACTCAGGGATTCCCAAATGCAATCAACACTCAAAACTTCCCATCTGTTGTTGTCCAACCTGGTGAGAAGTATAGAAACACCATGTTGTTCGAGTTTTCAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

337

Amino Acids

36.98

Weight (kDa)

5.95

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	9 - 332	2.4e-95	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	879
AarI	CACCTGC	1 cut(s)	857
Acc36I	ACCTGC	2 cut(s)	310, 857
AccB1I	GGYRCC	2 cut(s)	41, 638
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	529
AfaI	GTAC	2 cut(s)	549, 704
AfiI	CCNNNNNNNGG	3 cut(s)	179, 635, 786
AgsI	TTSAA	7 cut(s)	29, 160, 364, 438, 566, 751, 857
AjnI	CCWGG	4 cut(s)	66, 97, 814, 964
AluBI	AGCT	3 cut(s)	498, 503, 783
AluI	AGCT	3 cut(s)	498, 503, 783
Alw26I	GTCTC	4 cut(s)	261, 284, 765, 899
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	2 cut(s)	473, 872
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	3 cut(s)	193, 266, 529
ApeKI	GCWGC	3 cut(s)	72, 183, 758
AspS9I	GGNCC	2 cut(s)	193, 790
AsuC2I	CCSGG	3 cut(s)	197, 399, 400
AsuHPI	GGTGA	4 cut(s)	73, 629, 686, 980
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	531
BanI	GGYRCC	2 cut(s)	41, 638
BanII	GRGCYC	2 cut(s)	153, 897
BbvI	GCAGC	3 cut(s)	59, 170, 745
BccI	CCATC	6 cut(s)	86, 212, 358, 374, 689, 955
BciT130I	CCWGG	4 cut(s)	68, 99, 816, 966
BcnI	CCSGG	3 cut(s)	197, 399, 400
BcoDI	GTCTC	4 cut(s)	261, 284, 765, 899
BfaI	CTAG	1 cut(s)	698
BfuAI	ACCTGC	2 cut(s)	310, 857
BisI	GCNGC	3 cut(s)	73, 184, 759
BlpI	GCTNAGC	2 cut(s)	499, 504
BlsI	GCNGC	3 cut(s)	74, 185, 760
Bme1390I	CCNGG	7 cut(s)	68, 99, 197, 399, 400, 816, 966
Bme18I	GGWCC	1 cut(s)	790
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	193, 790
BmiI	GGNNCC	4 cut(s)	43, 171, 640, 791
BmrFI	CCNGG	7 cut(s)	68, 99, 197, 399, 400, 816, 966
BmrI	ACTGGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	810
BmuI	ACTGGG	1 cut(s)	843
Bpu1102I	GCTNAGC	2 cut(s)	499, 504
BpuEI	CTTGAG	1 cut(s)	769
BpuMI	CCSGG	3 cut(s)	197, 399, 400
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	6 cut(s)	67, 283, 397, 398, 814, 815
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 635, 786
Bse1I	ACTGG	3 cut(s)	521, 629, 838
Bse3DI	GCAATG	1 cut(s)	814
BseBI	CCWGG	4 cut(s)	68, 99, 816, 966
BseDI	CCNNGG	6 cut(s)	67, 283, 397, 398, 814, 815
BseGI	GGATG	5 cut(s)	223, 350, 601, 681, 825
BseLI	CCNNNNNNNGG	3 cut(s)	179, 635, 786
BseMI	GCAATG	1 cut(s)	814
BseMII	CTCAG	5 cut(s)	465, 518, 552, 651, 923
BseNI	ACTGG	3 cut(s)	521, 629, 838
BseRI	GAGGAG	1 cut(s)	679
BseXI	GCAGC	3 cut(s)	59, 170, 745
BsgI	GTGCAG	1 cut(s)	58
BshFI	GGCC	3 cut(s)	195, 268, 531
BshNI	GGYRCC	2 cut(s)	41, 638
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	196, 399
BslI	CCNNNNNNNGG	3 cut(s)	179, 635, 786
BsmAI	GTCTC	4 cut(s)	261, 284, 765, 899
BsnI	GGCC	3 cut(s)	195, 268, 531
Bso31I	GGTCTC	1 cut(s)	765
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	153, 897
Bsp143I	GATC	3 cut(s)	7, 210, 706
Bsp1720I	GCTNAGC	2 cut(s)	499, 504
Bsp19I	CCATGG	1 cut(s)	283
BspANI	GGCC	3 cut(s)	195, 268, 531
BspCNI	CTCAG	5 cut(s)	466, 517, 551, 652, 922
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	4 cut(s)	43, 171, 640, 791
BspMI	ACCTGC	2 cut(s)	310, 857
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	2 cut(s)	41, 638
BspTNI	GGTCTC	1 cut(s)	765
BsrDI	GCAATG	1 cut(s)	814
BsrI	ACTGG	3 cut(s)	521, 629, 838
BssECI	CCNNGG	6 cut(s)	67, 283, 397, 398, 814, 815
BssMI	GATC	3 cut(s)	7, 210, 706
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	4 cut(s)	68, 99, 816, 966
Bst4CI	ACNGT	2 cut(s)	278, 607
Bst6I	CTCTTC	1 cut(s)	729
BstC8I	GCNNGC	3 cut(s)	168, 529, 888
BstDEI	CTNAG	6 cut(s)	474, 499, 504, 538, 660, 909
BstDSI	CCRYGG	1 cut(s)	283
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	5 cut(s)	223, 350, 601, 681, 825
BstKTI	GATC	3 cut(s)	10, 213, 709
BstMAI	GTCTC	4 cut(s)	261, 284, 765, 899
BstMBI	GATC	3 cut(s)	7, 210, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 316, 892
BstNI	CCWGG	4 cut(s)	68, 99, 816, 966
BstNSI	RCATGY	2 cut(s)	758, 890
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	7 cut(s)	66, 97, 195, 397, 398, 814, 964
BstV1I	GCAGC	3 cut(s)	59, 170, 745
BstXI	CCANNNNNNTGG	1 cut(s)	692
BsuRI	GGCC	3 cut(s)	195, 268, 531
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	5 cut(s)	223, 350, 601, 681, 825
BtsI	GCAGTG	2 cut(s)	474, 654
BtsIMutI	CAGTG	3 cut(s)	474, 654, 831
BveI	ACCTGC	2 cut(s)	310, 857
Cac8I	GCNNGC	3 cut(s)	168, 529, 888
CaiI	CAGNNNCTG	2 cut(s)	473, 872
CciI	TCATGA	1 cut(s)	376
Cfr13I	GGNCC	2 cut(s)	193, 790
Cfr9I	CCCGGG	1 cut(s)	398
CsiI	ACCWGGT	1 cut(s)	964
Csp6I	GTAC	2 cut(s)	548, 703
CviQI	GTAC	2 cut(s)	548, 703
DdeI	CTNAG	6 cut(s)	474, 499, 504, 538, 660, 909
DpnI	GATC	3 cut(s)	9, 212, 708
DpnII	GATC	3 cut(s)	7, 210, 706
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	283
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	153, 897
Eco31I	GGTCTC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	790
Eco88I	CYCGRG	1 cut(s)	398
Eco91I	GGTNACC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	790
EcoO65I	GGTNACC	1 cut(s)	392
EcoRII	CCWGG	4 cut(s)	66, 97, 814, 964
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	2 cut(s)	153, 897
ErhI	CCWWGG	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	73, 184, 759
FokI	GGATG	5 cut(s)	230, 337, 608, 668, 832
FriOI	GRGCYC	2 cut(s)	153, 897
Fsp4HI	GCNGC	3 cut(s)	73, 184, 759
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	3 cut(s)	73, 184, 759
HaeIII	GGCC	3 cut(s)	195, 268, 531
HapII	CCGG	2 cut(s)	196, 399
HinfI	GANTC	7 cut(s)	51, 135, 140, 453, 677, 907, 915
HpaII	CCGG	2 cut(s)	196, 399
HphI	GGTGA	4 cut(s)	73, 629, 686, 980
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	5 cut(s)	331, 383, 733, 737, 786
HpyCH4III	ACNGT	2 cut(s)	278, 607
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	6 cut(s)	75, 186, 419, 823, 890, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 316, 892
HpyF3I	CTNAG	6 cut(s)	474, 499, 504, 538, 660, 909
HpySE526I	ACGT	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	7, 210, 706
LmnI	GCTCC	2 cut(s)	175, 804
Lsp1109I	GCAGC	3 cut(s)	59, 170, 745
LweI	GCATC	1 cut(s)	810
MabI	ACCWGGT	1 cut(s)	964
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	3 cut(s)	290, 392, 412
MalI	GATC	3 cut(s)	9, 212, 708
MboI	GATC	3 cut(s)	7, 210, 706
MboII	GAAGA	1 cut(s)	746
MhlI	GDGCHC	2 cut(s)	153, 897
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	1 cut(s)	838
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	5 cut(s)	60, 134, 447, 686, 901
MmeI	TCCRAC	3 cut(s)	87, 673, 985
MnlI	CCTC	7 cut(s)	65, 94, 279, 379, 657, 660, 682
Mox20I	TGGCCA	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	2 cut(s)	633, 795
MslI	CAYNNNNRTG	3 cut(s)	375, 446, 714
Msp20I	TGGCCA	1 cut(s)	531
MspI	CCGG	2 cut(s)	196, 399
MspR9I	CCNGG	7 cut(s)	68, 99, 197, 399, 400, 816, 966
MvaI	CCWGG	4 cut(s)	68, 99, 816, 966
MwoI	GCNNNNNNNGC	3 cut(s)	192, 316, 892
NciI	CCSGG	3 cut(s)	197, 399, 400
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	3 cut(s)	7, 210, 706
NlaIV	GGNNCC	4 cut(s)	43, 171, 640, 791
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	2 cut(s)	758, 890
PaeI	GCATGC	1 cut(s)	890
PagI	TCATGA	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	857
PasI	CCCWGGG	1 cut(s)	815
PceI	AGGCCT	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	135, 915
PkrI	GCNGC	3 cut(s)	74, 185, 760
PleI	GAGTC	5 cut(s)	59, 134, 447, 685, 901
PpsI	GAGTC	5 cut(s)	59, 134, 447, 685, 901
PpuMI	RGGWCCY	1 cut(s)	790
PsiI	TTATAA	1 cut(s)	879
Psp5II	RGGWCCY	1 cut(s)	790
Psp6I	CCWGG	4 cut(s)	66, 97, 814, 964
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	4 cut(s)	66, 97, 814, 964
PspN4I	GGNNCC	4 cut(s)	43, 171, 640, 791
PspPI	GGNCC	2 cut(s)	193, 790
PspPPI	RGGWCCY	1 cut(s)	790
PstNI	CAGNNNCTG	2 cut(s)	473, 872
RsaI	GTAC	2 cut(s)	549, 704
RsaNI	GTAC	2 cut(s)	548, 703
RseI	CAYNNNNRTG	3 cut(s)	375, 446, 714
SaqAI	TTAA	2 cut(s)	633, 795
SatI	GCNGC	3 cut(s)	73, 184, 759
Sau3AI	GATC	3 cut(s)	7, 210, 706
Sau96I	GGNCC	2 cut(s)	193, 790
SchI	GAGTC	5 cut(s)	60, 134, 447, 686, 901
ScrFI	CCNGG	7 cut(s)	68, 99, 197, 399, 400, 816, 966
SduI	GDGCHC	2 cut(s)	153, 897
SexAI	ACCWGGT	1 cut(s)	964
SfaNI	GCATC	1 cut(s)	810
SinI	GGWCC	1 cut(s)	790
SmaI	CCCGGG	1 cut(s)	400
SmiMI	CAYNNNNRTG	3 cut(s)	375, 446, 714
SmlI	CTYRAG	1 cut(s)	784
SmoI	CTYRAG	1 cut(s)	784
SphI	GCATGC	1 cut(s)	890
Sse9I	AATT	1 cut(s)	838
SseBI	AGGCCT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	698
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	7 cut(s)	66, 97, 195, 397, 398, 814, 964
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	278, 607
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	4 cut(s)	138, 456, 846, 996
TasI	AATT	1 cut(s)	838
TfiI	GAWTC	2 cut(s)	135, 915
Tru1I	TTAA	2 cut(s)	633, 795
Tru9I	TTAA	2 cut(s)	633, 795
TscAI	CASTG	3 cut(s)	474, 661, 838
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	3 cut(s)	72, 183, 758
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	612
TspGWI	ACGGA	2 cut(s)	82, 123
TspMI	CCCGGG	1 cut(s)	398
TspRI	CASTG	3 cut(s)	474, 661, 838
VpaK11BI	GGWCC	1 cut(s)	790
XceI	RCATGY	2 cut(s)	758, 890
XmaI	CCCGGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.