Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8198578.1

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Forward (+)

138 .. 708

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8198578.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 571 bp

atgggcgcggcggcggaggcggaaaggcctaccgtccgagtcaccaacatcccctgcaccatcaccgccaacgacctcctcaccttcctcgagtccactctcgggcccgactccatcttcgccatcgaaatcgccagcgaccacaagaactggaaatcccgcggcttcggccgcatccagttcaccaccctatcccacaaagccagagctcagtctctctcctccaccgccgacctcgtcttcaagtcccacaacctccgcctcttcgacaccaacgatgacatcatcccccggccgctggaccccaagcaccggctcgacgacacccttttgcacgccgggtttgtcgtcaacgacgagaccatgagcgtgctggagtcgtgggagggcgtccgggcttgggtcatgcccgagaggcggcgggtcgagttttgggtccggcggggtggtgactgtttcaagatggaggttgcgtttgagaatatcgtggagtctgttgggtgctgtttgggtggggataaagttaatgctctgcttttgaaggtaaattttgcttctttggtttttactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

190

Amino Acids

21.27

Weight (kDa)

5.96

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	8, 162
AcoI	YGGCCR	2 cut(s)	169, 293
AcsI	RAATTY	1 cut(s)	547
AcyI	GRCGYC	1 cut(s)	390
AfiI	CCNNNNNNNGG	5 cut(s)	102, 298, 312, 400, 417
AgsI	TTSAA	3 cut(s)	244, 460, 541
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	219, 353
Ama87I	CYCGRG	3 cut(s)	89, 101, 410
AoxI	GGCC	4 cut(s)	26, 104, 169, 293
ApaI	GGGCCC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	547
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	4 cut(s)	104, 105, 301, 436
AsuC2I	CCSGG	3 cut(s)	292, 340, 395
AsuHPI	GGTGA	5 cut(s)	34, 55, 73, 175, 461
AvaI	CYCGRG	3 cut(s)	89, 101, 410
AvaII	GGWCC	2 cut(s)	301, 436
BaeGI	GKGCMC	1 cut(s)	108
BanII	GRGCYC	2 cut(s)	108, 211
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	211
BccI	CCATC	4 cut(s)	68, 122, 131, 457
BcnI	CCSGG	3 cut(s)	292, 340, 395
BcoDI	GTCTC	2 cut(s)	219, 353
BglI	GCCNNNNNGGC	1 cut(s)	415
BisI	GCNGC	6 cut(s)	9, 12, 163, 172, 296, 419
BlsI	GCNGC	6 cut(s)	10, 13, 164, 173, 297, 420
Bme1390I	CCNGG	3 cut(s)	292, 340, 395
Bme18I	GGWCC	2 cut(s)	301, 436
BmeT110I	CYCGRG	3 cut(s)	89, 101, 410
BmgT120I	GGNCC	4 cut(s)	104, 105, 301, 436
BmiI	GGNNCC	3 cut(s)	106, 303, 437
BmrFI	CCNGG	3 cut(s)	292, 340, 395
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	395
BpuMI	CCSGG	3 cut(s)	292, 340, 395
BsaHI	GRCGYC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	160, 290
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 298, 312, 400, 417
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	2 cut(s)	155, 178
BseDI	CCNNGG	2 cut(s)	160, 290
BseGI	GGATG	3 cut(s)	48, 174, 285
BseLI	CCNNNNNNNGG	5 cut(s)	102, 298, 312, 400, 417
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	155, 178
BseRI	GAGGAG	2 cut(s)	68, 211
BseSI	GKGCMC	1 cut(s)	108
BseX3I	CGGCCG	2 cut(s)	169, 293
BsgI	GTGCAG	1 cut(s)	40
Bsh1236I	CGCG	2 cut(s)	8, 162
Bsh1285I	CGRYCG	2 cut(s)	172, 296
BshFI	GGCC	4 cut(s)	28, 106, 171, 295
BsiEI	CGRYCG	2 cut(s)	172, 296
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	3 cut(s)	89, 101, 410
BsiSI	CCGG	5 cut(s)	292, 313, 339, 394, 439
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	5 cut(s)	102, 298, 312, 400, 417
BsmAI	GTCTC	2 cut(s)	219, 353
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	28, 106, 171, 295
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	3 cut(s)	89, 101, 410
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	108, 211
BspANI	GGCC	4 cut(s)	28, 106, 171, 295
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	2 cut(s)	8, 162
BspLI	GGNNCC	3 cut(s)	106, 303, 437
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	155, 178
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	160, 290
BssNI	GRCGYC	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	34, 455
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	390
BstC8I	GCNNGC	3 cut(s)	136, 336, 371
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	3 cut(s)	48, 174, 285
BstFNI	CGCG	2 cut(s)	8, 162
BstHHI	GCGC	1 cut(s)	8
BstMAI	GTCTC	2 cut(s)	219, 353
BstMCI	CGRYCG	2 cut(s)	172, 296
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 168, 171, 415
BstSCI	CCNGG	3 cut(s)	290, 338, 393
BstSLI	GKGCMC	1 cut(s)	108
BstUI	CGCG	2 cut(s)	8, 162
BstV2I	GAAGAC	1 cut(s)	232
BstZI	CGGCCG	2 cut(s)	169, 293
BsuRI	GGCC	4 cut(s)	28, 106, 171, 295
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	48, 174, 285
Cac8I	GCNNGC	3 cut(s)	136, 336, 371
CfoI	GCGC	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	4 cut(s)	104, 105, 301, 436
Cfr42I	CCGCGG	1 cut(s)	163
CseI	GACGC	1 cut(s)	379
CviAII	CATG	2 cut(s)	364, 406
CviJI	RGCY	9 cut(s)	28, 106, 165, 171, 203, 209, 295, 316, 398
CviKI_1	RGCY	9 cut(s)	28, 106, 165, 171, 203, 209, 295, 316, 398
DdeI	CTNAG	1 cut(s)	210
EaeI	YGGCCR	2 cut(s)	169, 293
EagI	CGGCCG	2 cut(s)	169, 293
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EciI	GGCGGA	3 cut(s)	29, 35, 248
Ecl136II	GAGCTC	1 cut(s)	209
EclXI	CGGCCG	2 cut(s)	169, 293
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	2 cut(s)	108, 211
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	2 cut(s)	301, 436
Eco52I	CGGCCG	2 cut(s)	169, 293
Eco53kI	GAGCTC	1 cut(s)	209
Eco88I	CYCGRG	3 cut(s)	89, 101, 410
EcoICRI	GAGCTC	1 cut(s)	209
EcoT38I	GRGCYC	2 cut(s)	108, 211
FaeI	CATG	2 cut(s)	367, 409
FaiI	YATR	2 cut(s)	365, 407
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	363, 405
FauI	CCCGC	3 cut(s)	167, 414, 435
Fnu4HI	GCNGC	6 cut(s)	9, 12, 163, 172, 296, 419
FokI	GGATG	3 cut(s)	35, 161, 272
FriOI	GRGCYC	2 cut(s)	108, 211
Fsp4HI	GCNGC	6 cut(s)	9, 12, 163, 172, 296, 419
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	6 cut(s)	9, 12, 163, 172, 296, 419
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	4 cut(s)	28, 106, 171, 295
HapII	CCGG	5 cut(s)	292, 313, 339, 394, 439
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	367, 409
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	5 cut(s)	39, 92, 110, 377, 491
HpaII	CCGG	5 cut(s)	292, 313, 339, 394, 439
HphI	GGTGA	5 cut(s)	34, 55, 73, 175, 461
Hpy166II	GTNNAC	3 cut(s)	96, 183, 352
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	460
Hpy8I	GTNNAC	3 cut(s)	96, 183, 352
Hpy99I	CGWCG	2 cut(s)	323, 359
HpyAV	CCTTC	2 cut(s)	94, 535
HpyCH4III	ACNGT	2 cut(s)	34, 455
HpyCH4V	TGCA	2 cut(s)	57, 334
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 168, 171, 415
HpyF3I	CTNAG	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	367, 409
HspAI	GCGC	1 cut(s)	6
KspI	CCGCGG	1 cut(s)	163
LweI	GCATC	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	40, 449
MboII	GAAGA	3 cut(s)	109, 232, 256
MhlI	GDGCHC	2 cut(s)	108, 211
MluCI	AATT	1 cut(s)	547
MlyI	GAGTC	5 cut(s)	48, 101, 104, 386, 500
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	162, 298
MspI	CCGG	5 cut(s)	292, 313, 339, 394, 439
MspR9I	CCNGG	3 cut(s)	292, 340, 395
MvnI	CGCG	2 cut(s)	8, 162
MwoI	GCNNNNNNNGC	4 cut(s)	17, 168, 171, 415
NciI	CCSGG	3 cut(s)	292, 340, 395
NlaIII	CATG	2 cut(s)	367, 409
NlaIV	GGNNCC	3 cut(s)	106, 303, 437
NmuCI	GTSAC	2 cut(s)	40, 449
PaeR7I	CTCGAG	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 354
PflFI	GACNNNGTC	1 cut(s)	236
PkrI	GCNGC	6 cut(s)	10, 13, 164, 173, 297, 420
PleI	GAGTC	5 cut(s)	47, 100, 104, 385, 499
PpsI	GAGTC	5 cut(s)	47, 100, 104, 385, 499
Psp124BI	GAGCTC	1 cut(s)	211
PspN4I	GGNNCC	3 cut(s)	106, 303, 437
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	4 cut(s)	104, 105, 301, 436
PspXI	VCTCGAGB	1 cut(s)	89
PsyI	GACNNNGTC	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	211
SacII	CCGCGG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	6 cut(s)	9, 12, 163, 172, 296, 419
Sau96I	GGNCC	4 cut(s)	104, 105, 301, 436
SchI	GAGTC	5 cut(s)	48, 101, 104, 386, 500
ScrFI	CCNGG	3 cut(s)	292, 340, 395
SduI	GDGCHC	2 cut(s)	108, 211
SetI	ASST	7 cut(s)	78, 86, 211, 237, 258, 471, 546
SfaNI	GCATC	1 cut(s)	183
Sfr274I	CTCGAG	1 cut(s)	89
Sfr303I	CCGCGG	1 cut(s)	163
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	301, 436
SlaI	CTCGAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	547
SseBI	AGGCCT	1 cut(s)	28
SstI	GAGCTC	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	3 cut(s)	290, 338, 393
TaaI	ACNGT	2 cut(s)	34, 455
TaqI	TCGA	5 cut(s)	90, 126, 267, 318, 426
TasI	AATT	1 cut(s)	547
TauI	GCSGC	6 cut(s)	11, 14, 165, 174, 298, 421
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TseFI	GTSAC	2 cut(s)	40, 449
Tsp45I	GTSAC	2 cut(s)	40, 449
Tth111I	GACNNNGTC	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	301, 436
XapI	RAATTY	1 cut(s)	547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.