Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Forward (+)

55874179 .. 55878668

Gene Structure 4490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3303 bp

ATGGGCGCGGAGGCGGAGGCGGAGGCGAAGAGGCCCACCGTCCGAGTCACCAACATCCCCTGCACCATCACCGCCAAGGACCTCCTCACCTTCCTCGAGTCCACTCTCGGCCCCGACTCCATCTTCGCCATCGAAATCGCTAGCGACCACAAGAACTGGAAATCCCGCGGCTTCGGCCGCATCCAGTTCACCACCCTAGCCCACAAAGCCAGAGCTCAGTCTCTCTCCTCCTCCGCCGACCTCGTCTTCAAGTCCCACAACCTCCGCCTCTTCGACACCCACGATGACATCATCCCCCGGCCGCTGGACCCCAAGCACCGGCTCGACGACACCGTTTTGCACGCCGGGTTTGTCGTCAACGACGAGACCATGAGCGTGCTGGAGTCGTGGGAGGGCGTCCGGGCTTGGGTCATGCCCGAGAGGCGGCGGGTCGAGTTTTGGGTCCGGCGGGGCGGTGACTGTTACAAGATGGAGGTTGCGTTTGAGAATATCGTGGAGTCTGTTGGCTGCTGTTTGGGTGGGGATAAAGTTAATGCTCTGCTTTTGAAGATGTTAAGACTCGGCGGATTTTGGTTTTCTCAGCTCAAGTTTAGCCCGAAGATTTTTCGCAAAGTATCAGGACCTAATGTAGCTTCGAAGTTTAGTGCTGATCGGTATCACTTTTGCAAGGAAGACTTTGATTATCTGTGGGTGAGGACTACAGATTTTTCTGAGACGAAGTCGATTGGCCATTCAACTTCGTTTTGCTGGGAGATTCAGGAGGACTTTTTGGTGGCGGGTCTTTTTATGAAGTTTCCAAGCTTTAGGAAAGATGTGGTGGATCTCATGTTTGAGGATGGTGATGGGTATCTTTCGGTTTCTGAGACAGTTCCGCTTGTGAAATGTGAAGCAGATTCAGAGTTACCTTATGAGATTCTTTTCCAGCTTAATGCACTTGTTCATGCTCAGAAGATTAGCCTTGCTGCAGCGGAGTGTGATCTCATTGAGTTCTTTGGTGGTTTGAGTATGGACACTGCTAATGTGCTTCTTCAGAAGCTGCAGAAGCTCAAGACCACTTGTTATGACCCTCTATCATATGCAAAGATTTACTGCTTGGGTCCTGAGCTTGAAAAATCAAACTATGTTGTGAAGAACTTTGCTCAATATGCCTCAGATTTTATGAGGGTTACATTTGTTGAAGAGGATTGGAGTAAGCTTCCTGTAAATGCTCTCTCCACAAGTATTGAACAAGGTTTCTTTGCAAAACCTTTTAGAACTGGAATATATCAGCGGATATTGTCTATTCTTCGAGATGGAATTGTGATTGGAGATAAAAGATTTGAGTTTCTGGCTTTCTCGGCGAGTCAACTCCGATCAAATTCTGTTTGGATGTTTGCTTCAAATGACAGTGTAAAGGCAGAAGATATTAGAGAATGGATGGGTTGCTTCCACAAGATCCGCAGTGTATCTAAATGTGCAGCTAGGATGGGTCAGCTATTCAGTTCTTCAACGCAAACTCTTGTTGTCCCTCAACAGGATGTGGAGCTCATTCCTGACATTGAGACTTCTTCTGATGGTGTGAGTTACTGCTTCTCTGATGGTATTGGAAAGATTTCCTTATCTTTTGCCAGGCAAGTTGCTCAAAAGTGCGGACTGAATCACACTCCTTCAGCATTCCAAATTCGATATGGTGGATATAAAGGGGTGATAGCCGTTGACCGTAATTCTTTCCGGAAGCTGTCTCTACGTAGTAGTATGCTCAAATTTGAGTCGAACAACAGAATGCTTAATGTCACTAAATGGAGTTCCTCCATGCCCTGCTTTCTGAATCGAGAAATTATAACCCTCATGTCTACGCTAGGGGTAGAGGATGAAGCATTTGAAGCATTGCAACGGGAGCAATTGGATCTGTTAGGAAGGATGCGGAAAGAAAGAAATGTAGCACTAACTGCCCTAGAGAAACTAAGCGGTGCTGATTCCAATAACATTCTTGTTAAGATGTTGCTCCAAGGTTATGAGCCTAATCTGGAACCTTATCTCTCAATGATGCTTCAAGCACACTATGAGCACCACTTGACTGATTTAAAGAGTAGGTGCCGCATATATGTCCCAAAAGGAAGAATCCTGGTTGGTTGCTTGGATGAAACTGGTAGTTTAAACTATGGCCAAGTTTATGTTCGAATAACCATGACCAAAGCAGAGCAAGAAATGGGGCATCAGAATTTCTTCCAGAGGGTGGATGAGGCAACATGTATAGTAACAGGGAAGGTGGTTGTCACCAAAAATCCTTGTCTTCATCCTGGAGACATCAGGGTACTTGAGGCTGTCTATGATGTGGGACTAGAGGAGAAGAATATGGTGGATTGCCTTGTATTTCCCCAGAAAGGAGAAAGGCCTCATCCAAATGAATGCTCCGGGGGTGATCTGGATGGAGATTTGTTTTTTATAAGTTGGGATAAAAGTCTTATTCCTCCTCATACTGTACCTCCGATGGACTACTCTGCACGGAGACCTCGCAATATGGATCACGATGTGACTTTAGAGGAAATTCAAAAGTTCTTTGTGGATTACATGATAAATGATAATTTGGGTGCCATCTCTACTGCACATCTAGTTCATTCTGACCACGAGCCAGAAAAAGCCCTGAGTAAAAAATGCCTGGAGTTGGCAGACCTGCACTCCATGGCTGTTGACTTTGCCAAAACTGGTGCACCAGCTGAAATGTCCTGGATTTTAAAACCAAGAGAATTTCCGGATTTCATGGAAAGGGTGGACAAACCGATGTACATCTCCGATGGGGCATTAGGAAAGCTATACCATGCAATTCTTAGCTCAGTGGTTCAAGAACAAACAACTGTTGTCTGGTCAGAGCAGATGGCTCAAACAGCTTATGACAGGGAGCTTGAAGCACAAGGTTTCGAGTCCTTTCTTGACATTGCAGAGAGTCACAGGGGCACATACATGGAGAAGATGGAAAGGCTCATGAACTATTATGAAGCAGCGACTGAAGATGAAATACTGACTGGTAACCTCCGAAACCGTGCAGCCTATCTGCAGCGCGATAACAGGAGATATTTTGACTTGAAGGATCGAATCTTGCTGTCACTCAAGACCCTACAGAAGGAAGCAAAAGGATGGTTCGAAAGCAGCTGCAAGGTAAGTGAGCAGCAGCAGTTGGCCTCGGCATGGTACCATGTGACTTACAACTCATCTTATTTCCAGAAAGACATGAACTGCCTGAGCTTTCCATGGATTTTGGGCGACATTCTGCTCAACATCAAGTCTCTGAATAGCCGAAGAAACCGCACGGTTACAAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1100

Amino Acids

125.19

Weight (kDa)

5.93

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	13 - 96	3.2e-28	RdRP1/2, RRM domain
PH_RDR2	PF24823	113 - 275	5.8e-60	RDR2 PH-like domain
RdRP_helical	PF26252	291 - 361	2.5e-12	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	361 - 935	2.4e-189	RNA dependent RNA polymerase
RdRP_head	PF26253	956 - 1095	4.1e-38	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1820, 2426
Acc36I	ACCTGC	1 cut(s)	2661
Acc65I	GGTACC	1 cut(s)	3168
AccB1I	GGYRCC	3 cut(s)	2073, 2570, 3168
AccB7I	CCANNNNNTGG	1 cut(s)	2215
AccI	GTMKAC	1 cut(s)	1832
AccII	CGCG	3 cut(s)	8, 168, 3039
AccIII	TCCGGA	2 cut(s)	1710, 2731
AclWI	GGATC	5 cut(s)	828, 1429, 1893, 2511, 3075
AcoI	YGGCCR	4 cut(s)	175, 299, 727, 2143
AcsI	RAATTY	6 cut(s)	1357, 1659, 1742, 2200, 2526, 2726
AcuI	CTGAAG	3 cut(s)	1013, 1632, 3006
AcyI	GRCGYC	1 cut(s)	396
AdeI	CACNNNGTG	1 cut(s)	2512
AfaI	GTAC	4 cut(s)	2295, 2463, 2765, 3170
AflIII	ACRYGT	1 cut(s)	2228
AjnI	CCWGG	5 cut(s)	1607, 2103, 2278, 2637, 2705
AjuI	GAANNNNNNNTTGG	2 cut(s)	2139, 2171
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
Alw21I	GWGCWC	4 cut(s)	217, 1527, 2049, 2692
Alw26I	GTCTC	9 cut(s)	225, 359, 707, 857, 1535, 1725, 2277, 2482, 3267
Alw44I	GTGCAC	1 cut(s)	2688
AlwI	GGATC	5 cut(s)	828, 1429, 1893, 2511, 3075
AlwNI	CAGNNNCTG	2 cut(s)	1036, 2984
Ama87I	CYCGRG	2 cut(s)	95, 416
Aor13HI	TCCGGA	2 cut(s)	1710, 2731
AoxI	GGCC	8 cut(s)	32, 109, 175, 299, 727, 2143, 2372, 3156
ApaLI	GTGCAC	1 cut(s)	2688
ApoI	RAATTY	6 cut(s)	1357, 1659, 1742, 2200, 2526, 2726
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp700I	GAANNNNTTC	2 cut(s)	1591, 2204
Asp718I	GGTACC	1 cut(s)	3168
AspLEI	GCGC	2 cut(s)	8, 3039
AspS9I	GGNCC	7 cut(s)	33, 79, 110, 307, 442, 620, 1097
AsuC2I	CCSGG	4 cut(s)	298, 346, 401, 2395
AsuII	TTCGAA	3 cut(s)	635, 2158, 3120
AsuNHI	GCTAGC	1 cut(s)	140
AvaI	CYCGRG	2 cut(s)	95, 416
AvaII	GGWCC	5 cut(s)	79, 307, 442, 620, 1097
BaeGI	GKGCMC	2 cut(s)	2692, 2936
BalI	TGGCCA	2 cut(s)	729, 2145
BanI	GGYRCC	3 cut(s)	2073, 2570, 3168
BanII	GRGCYC	2 cut(s)	217, 1527
BarI	GAAGNNNNNNTAC	2 cut(s)	2979, 3011
BauI	CACGAG	1 cut(s)	2606
BbsI	GAAGAC	3 cut(s)	238, 678, 2264
Bbv12I	GWGCWC	4 cut(s)	217, 1527, 2049, 2692
BceAI	ACGGC	1 cut(s)	1676
BciT130I	CCWGG	5 cut(s)	1609, 2105, 2280, 2639, 2707
BcnI	CCSGG	4 cut(s)	298, 346, 401, 2395
BcoDI	GTCTC	9 cut(s)	225, 359, 707, 857, 1535, 1725, 2277, 2482, 3267
BfaI	CTAG	7 cut(s)	141, 197, 1461, 1838, 1934, 2321, 2591
BfmI	CTRYAG	5 cut(s)	699, 963, 1037, 3032, 3095
BfuAI	ACCTGC	1 cut(s)	2661
BglI	GCCNNNNNGGC	1 cut(s)	421
Bme1390I	CCNGG	9 cut(s)	298, 346, 401, 1609, 2105, 2280, 2395, 2639, 2707
Bme18I	GGWCC	5 cut(s)	79, 307, 442, 620, 1097
BmeT110I	CYCGRG	2 cut(s)	95, 416
BmgT120I	GGNCC	7 cut(s)	33, 79, 110, 307, 442, 620, 1097
BmiI	GGNNCC	8 cut(s)	112, 309, 443, 1098, 2010, 2075, 2572, 3170
BmrFI	CCNGG	9 cut(s)	298, 346, 401, 1609, 2105, 2280, 2395, 2639, 2707
BmsI	GCATC	4 cut(s)	189, 1890, 2016, 2203
BmtI	GCTAGC	1 cut(s)	144
BpiI	GAAGAC	3 cut(s)	238, 678, 2264
BpmI	CTGGAG	3 cut(s)	401, 2301, 2660
Bpu10I	CCTNAGC	2 cut(s)	1101, 3218
Bpu14I	TTCGAA	3 cut(s)	635, 2158, 3120
BpuEI	CTTGAG	4 cut(s)	569, 1031, 2318, 3071
BpuMI	CCSGG	4 cut(s)	298, 346, 401, 2395
BsaAI	YACGTR	1 cut(s)	1727
BsaBI	GATNNNNATC	3 cut(s)	654, 846, 2765
BsaHI	GRCGYC	1 cut(s)	396
BsaI	GGTCTC	2 cut(s)	359, 2482
BsaJI	CCNNGG	8 cut(s)	75, 166, 296, 1987, 2394, 2661, 3159, 3227
BsaWI	WCCGGW	2 cut(s)	1710, 2731
BsaXI	ACNNNNNCTCC	6 cut(s)	464, 494, 2449, 2479, 2642, 2672
Bse118I	RCCGGY	1 cut(s)	318
Bse1I	ACTGG	6 cut(s)	161, 184, 1261, 2131, 2689, 3007
Bse3DI	GCAATG	2 cut(s)	1865, 2913
Bse8I	GATNNNNATC	3 cut(s)	654, 846, 2765
BseAI	TCCGGA	2 cut(s)	1710, 2731
BseBI	CCWGG	5 cut(s)	1609, 2105, 2280, 2639, 2707
BseDI	CCNNGG	8 cut(s)	75, 166, 296, 1987, 2394, 2661, 3159, 3227
BseJI	GATNNNNATC	3 cut(s)	654, 846, 2765
BseMI	GCAATG	2 cut(s)	1865, 2913
BseNI	ACTGG	6 cut(s)	161, 184, 1261, 2131, 2689, 3007
BseRI	GAGGAG	5 cut(s)	74, 217, 220, 2339, 2442
BseSI	GKGCMC	2 cut(s)	2692, 2936
BseX3I	CGGCCG	2 cut(s)	175, 299
BseYI	CCCAGC	1 cut(s)	747
BsgI	GTGCAG	6 cut(s)	46, 1476, 2466, 2568, 2639, 3042
Bsh1236I	CGCG	3 cut(s)	8, 168, 3039
Bsh1285I	CGRYCG	2 cut(s)	178, 302
BshFI	GGCC	8 cut(s)	34, 111, 177, 301, 729, 2145, 2374, 3158
BshNI	GGYRCC	3 cut(s)	2073, 2570, 3168
BsiEI	CGRYCG	2 cut(s)	178, 302
BsiHKAI	GWGCWC	4 cut(s)	217, 1527, 2049, 2692
BsiHKCI	CYCGRG	2 cut(s)	95, 416
BsiSI	CCGG	8 cut(s)	298, 319, 345, 400, 445, 1711, 2394, 2732
BslFI	GGGAC	4 cut(s)	238, 1490, 2072, 2331
BsmAI	GTCTC	9 cut(s)	225, 359, 707, 857, 1535, 1725, 2277, 2482, 3267
BsmBI	CGTCTC	1 cut(s)	707
BsmFI	GGGAC	4 cut(s)	238, 1490, 2072, 2331
BsmI	GAATGC	3 cut(s)	1652, 1767, 2393
BsnI	GGCC	8 cut(s)	34, 111, 177, 301, 729, 2145, 2374, 3158
Bso31I	GGTCTC	2 cut(s)	359, 2482
BsoBI	CYCGRG	2 cut(s)	95, 416
Bsp119I	TTCGAA	3 cut(s)	635, 2158, 3120
Bsp1286I	GDGCHC	5 cut(s)	217, 1527, 2049, 2692, 2936
Bsp13I	TCCGGA	2 cut(s)	1710, 2731
Bsp1407I	TGTACA	1 cut(s)	2763
Bsp143I	GATC	9 cut(s)	649, 820, 976, 1352, 1434, 1885, 2401, 2503, 3067
Bsp19I	CCATGG	2 cut(s)	2661, 3227
BspANI	GGCC	8 cut(s)	34, 111, 177, 301, 729, 2145, 2374, 3158
BspEI	TCCGGA	2 cut(s)	1710, 2731
BspFNI	CGCG	3 cut(s)	8, 168, 3039
BspHI	TCATGA	1 cut(s)	2961
BspLI	GGNNCC	8 cut(s)	112, 309, 443, 1098, 2010, 2075, 2572, 3170
BspMAI	CTGCAG	3 cut(s)	967, 1041, 3036
BspMI	ACCTGC	1 cut(s)	2661
BspOI	GCTAGC	1 cut(s)	144
BspPI	GGATC	5 cut(s)	828, 1429, 1893, 2511, 3075
BspT104I	TTCGAA	3 cut(s)	635, 2158, 3120
BspT107I	GGYRCC	3 cut(s)	2073, 2570, 3168
BspTNI	GGTCTC	2 cut(s)	359, 2482
BsrDI	GCAATG	2 cut(s)	1865, 2913
BsrFI	RCCGGY	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	2763
BsrI	ACTGG	6 cut(s)	161, 184, 1261, 2131, 2689, 3007
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	8 cut(s)	75, 166, 296, 1987, 2394, 2661, 3159, 3227
BssMI	GATC	9 cut(s)	649, 820, 976, 1352, 1434, 1885, 2401, 2503, 3067
BssNI	GRCGYC	1 cut(s)	396
BssSI	CACGAG	1 cut(s)	2606
BssT1I	CCWWGG	4 cut(s)	75, 1987, 2661, 3227
Bst2BI	CACGAG	1 cut(s)	2606
Bst2UI	CCWGG	5 cut(s)	1609, 2105, 2280, 2639, 2707
Bst6I	CTCTTC	3 cut(s)	23, 275, 1173
BstACI	GRCGYC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	1928
BstAUI	TGTACA	1 cut(s)	2763
BstBAI	YACGTR	1 cut(s)	1727
BstBI	TTCGAA	3 cut(s)	635, 2158, 3120
BstC8I	GCNNGC	3 cut(s)	142, 342, 377
BstDSI	CCRYGG	3 cut(s)	166, 2661, 3227
BstEII	GGTNACC	1 cut(s)	3005
BstENI	CCTNNNNNAGG	1 cut(s)	3098
BstFNI	CGCG	3 cut(s)	8, 168, 3039
BstHHI	GCGC	2 cut(s)	8, 3039
BstKTI	GATC	9 cut(s)	652, 823, 979, 1355, 1437, 1888, 2404, 2506, 3070
BstMAI	GTCTC	9 cut(s)	225, 359, 707, 857, 1535, 1725, 2277, 2482, 3267
BstMBI	GATC	9 cut(s)	649, 820, 976, 1352, 1434, 1885, 2401, 2503, 3067
BstMCI	CGRYCG	2 cut(s)	178, 302
BstNI	CCWGG	5 cut(s)	1609, 2105, 2280, 2639, 2707
BstNSI	RCATGY	1 cut(s)	2232
BstPI	GGTNACC	1 cut(s)	3005
BstSCI	CCNGG	9 cut(s)	296, 344, 399, 1607, 2103, 2278, 2393, 2637, 2705
BstSFI	CTRYAG	5 cut(s)	699, 963, 1037, 3032, 3095
BstSLI	GKGCMC	2 cut(s)	2692, 2936
BstSNI	TACGTA	1 cut(s)	1727
BstUI	CGCG	3 cut(s)	8, 168, 3039
BstV2I	GAAGAC	3 cut(s)	238, 678, 2264
BstX2I	RGATCY	3 cut(s)	820, 1434, 1885
BstYI	RGATCY	3 cut(s)	820, 1434, 1885
BstZI	CGGCCG	2 cut(s)	175, 299
BsuRI	GGCC	8 cut(s)	34, 111, 177, 301, 729, 2145, 2374, 3158
BtgI	CCRYGG	3 cut(s)	166, 2661, 3227
BtsI	GCAGTG	2 cut(s)	1011, 1447
BtsIMutI	CAGTG	4 cut(s)	1011, 1393, 1447, 2820
BveI	ACCTGC	1 cut(s)	2661
Cac8I	GCNNGC	3 cut(s)	142, 342, 377
CaiI	CAGNNNCTG	2 cut(s)	1036, 2984
CciI	TCATGA	1 cut(s)	2961
CfoI	GCGC	2 cut(s)	8, 3039
Cfr10I	RCCGGY	1 cut(s)	318
Cfr13I	GGNCC	7 cut(s)	33, 79, 110, 307, 442, 620, 1097
Cfr42I	CCGCGG	1 cut(s)	169
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	4 cut(s)	2294, 2462, 2764, 3169
CspCI	CAANNNNNGTGG	2 cut(s)	1204, 1239
CviQI	GTAC	4 cut(s)	2294, 2462, 2764, 3169
DpnI	GATC	9 cut(s)	651, 822, 978, 1354, 1436, 1887, 2403, 2505, 3069
DpnII	GATC	9 cut(s)	649, 820, 976, 1352, 1434, 1885, 2401, 2503, 3067
DraI	TTTAAA	3 cut(s)	2064, 2136, 2715
DraIII	CACNNNGTG	1 cut(s)	2512
EaeI	YGGCCR	4 cut(s)	175, 299, 727, 2143
EagI	CGGCCG	2 cut(s)	175, 299
Eam1104I	CTCTTC	3 cut(s)	23, 275, 1173
EarI	CTCTTC	3 cut(s)	23, 275, 1173
EciI	GGCGGA	5 cut(s)	29, 35, 223, 254, 579
Ecl136II	GAGCTC	2 cut(s)	215, 1525
EclXI	CGGCCG	2 cut(s)	175, 299
Eco105I	TACGTA	1 cut(s)	1727
Eco130I	CCWWGG	4 cut(s)	75, 1987, 2661, 3227
Eco147I	AGGCCT	1 cut(s)	2374
Eco24I	GRGCYC	2 cut(s)	217, 1527
Eco31I	GGTCTC	2 cut(s)	359, 2482
Eco47I	GGWCC	5 cut(s)	79, 307, 442, 620, 1097
Eco52I	CGGCCG	2 cut(s)	175, 299
Eco53kI	GAGCTC	2 cut(s)	215, 1525
Eco57I	CTGAAG	3 cut(s)	1013, 1632, 3006
Eco88I	CYCGRG	2 cut(s)	95, 416
Eco91I	GGTNACC	1 cut(s)	3005
EcoICRI	GAGCTC	2 cut(s)	215, 1525
EcoNI	CCTNNNNNAGG	1 cut(s)	3098
EcoO109I	RGGNCCY	3 cut(s)	79, 620, 1097
EcoO65I	GGTNACC	1 cut(s)	3005
EcoRII	CCWGG	5 cut(s)	1607, 2103, 2278, 2637, 2705
EcoT14I	CCWWGG	4 cut(s)	75, 1987, 2661, 3227
EcoT38I	GRGCYC	2 cut(s)	217, 1527
ErhI	CCWWGG	4 cut(s)	75, 1987, 2661, 3227
Esp3I	CGTCTC	1 cut(s)	707
FalI	AAGNNNNNCTT	4 cut(s)	659, 691, 1580, 1612
FaqI	GGGAC	4 cut(s)	238, 1490, 2072, 2331
FauI	CCCGC	4 cut(s)	173, 420, 441, 769
FauNDI	CATATG	1 cut(s)	1075
FblI	GTMKAC	1 cut(s)	1832
FriOI	GRGCYC	2 cut(s)	217, 1527
FspBI	CTAG	7 cut(s)	141, 197, 1461, 1838, 1934, 2321, 2591
GlaI	GCGC	2 cut(s)	7, 3038
GsaI	CCCAGC	1 cut(s)	751
GsuI	CTGGAG	3 cut(s)	401, 2301, 2660
HaeIII	GGCC	8 cut(s)	34, 111, 177, 301, 729, 2145, 2374, 3158
HapII	CCGG	8 cut(s)	298, 319, 345, 400, 445, 1711, 2394, 2732
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	2 cut(s)	8, 3039
Hin1I	GRCGYC	1 cut(s)	396
Hin6I	GCGC	2 cut(s)	6, 3037
HinP1I	GCGC	2 cut(s)	6, 3037
HincII	GTYRAC	4 cut(s)	358, 1346, 1696, 2671
HindII	GTYRAC	4 cut(s)	358, 1346, 1696, 2671
HindIII	AAGCTT	2 cut(s)	799, 1193
HpaII	CCGG	8 cut(s)	298, 319, 345, 400, 445, 1711, 2394, 2732
Hpy166II	GTNNAC	9 cut(s)	102, 189, 358, 1346, 1696, 1833, 2671, 2690, 2752
Hpy8I	GTNNAC	9 cut(s)	102, 189, 358, 1346, 1696, 1833, 2671, 2690, 2752
Hpy99I	CGWCG	2 cut(s)	329, 365
HpyAV	CCTTC	6 cut(s)	100, 1656, 1890, 2239, 3058, 3094
HpyCH4IV	ACGT	1 cut(s)	1726
HpySE526I	ACGT	1 cut(s)	1726
Hsp92I	GRCGYC	1 cut(s)	396
HspAI	GCGC	2 cut(s)	6, 3037
Kpn2I	TCCGGA	2 cut(s)	1710, 2731
KpnI	GGTACC	1 cut(s)	3172
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	9 cut(s)	649, 820, 976, 1352, 1434, 1885, 2401, 2503, 3067
LmnI	GCTCC	5 cut(s)	1522, 1876, 1989, 2396, 2878
LweI	GCATC	4 cut(s)	189, 1890, 2016, 2203
MaeI	CTAG	7 cut(s)	141, 197, 1461, 1838, 1934, 2321, 2591
MaeII	ACGT	1 cut(s)	1726
MalI	GATC	9 cut(s)	651, 822, 978, 1354, 1436, 1887, 2403, 2505, 3069
MboI	GATC	9 cut(s)	649, 820, 976, 1352, 1434, 1885, 2401, 2503, 3067
MfeI	CAATTG	1 cut(s)	1880
MflI	RGATCY	3 cut(s)	820, 1434, 1885
MhlI	GDGCHC	5 cut(s)	217, 1527, 2049, 2692, 2936
MlsI	TGGCCA	2 cut(s)	729, 2145
MluNI	TGGCCA	2 cut(s)	729, 2145
Mox20I	TGGCCA	2 cut(s)	729, 2145
MroI	TCCGGA	2 cut(s)	1710, 2731
MroXI	GAANNNNTTC	2 cut(s)	1591, 2204
MscI	TGGCCA	2 cut(s)	729, 2145
MseI	TTAA	8 cut(s)	531, 554, 927, 1767, 1974, 2063, 2135, 2714
MslI	CAYNNNNRTG	3 cut(s)	374, 2382, 2939
Msp20I	TGGCCA	2 cut(s)	729, 2145
MspA1I	CMGCKG	6 cut(s)	168, 304, 968, 1270, 2696, 3129
MspI	CCGG	8 cut(s)	298, 319, 345, 400, 445, 1711, 2394, 2732
MspR9I	CCNGG	9 cut(s)	298, 346, 401, 1609, 2105, 2280, 2395, 2639, 2707
MssI	GTTTAAAC	1 cut(s)	2136
MunI	CAATTG	1 cut(s)	1880
Mva1269I	GAATGC	3 cut(s)	1652, 1767, 2393
MvaI	CCWGG	5 cut(s)	1609, 2105, 2280, 2639, 2707
MvnI	CGCG	3 cut(s)	8, 168, 3039
NciI	CCSGG	4 cut(s)	298, 346, 401, 2395
NcoI	CCATGG	2 cut(s)	2661, 3227
NdeI	CATATG	1 cut(s)	1075
NdeII	GATC	9 cut(s)	649, 820, 976, 1352, 1434, 1885, 2401, 2503, 3067
NheI	GCTAGC	1 cut(s)	140
NlaIV	GGNNCC	8 cut(s)	112, 309, 443, 1098, 2010, 2075, 2572, 3170
NmeAIII	GCCGAG	4 cut(s)	87, 540, 1316, 3140
NmuCI	GTSAC	8 cut(s)	46, 455, 1771, 2254, 2512, 2924, 3081, 3175
NspI	RCATGY	1 cut(s)	2232
NspV	TTCGAA	3 cut(s)	635, 2158, 3120
PaeR7I	CTCGAG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	2961
PceI	AGGCCT	1 cut(s)	2374
PciI	ACATGT	1 cut(s)	2228
PcsI	WCGNNNNNNNCGW	3 cut(s)	279, 330, 360
PctI	GAATGC	3 cut(s)	1652, 1767, 2393
PdmI	GAANNNNTTC	2 cut(s)	1591, 2204
PfeI	GAWTC	8 cut(s)	754, 893, 913, 1636, 1807, 1955, 2100, 3072
PflFI	GACNNNGTC	2 cut(s)	242, 718
PflMI	CCANNNNNTGG	1 cut(s)	2215
PfoI	TCCNGGA	2 cut(s)	2278, 2705
PmeI	GTTTAAAC	1 cut(s)	2136
Ppu21I	YACGTR	1 cut(s)	1727
PpuMI	RGGWCCY	3 cut(s)	79, 620, 1097
PscI	ACATGT	1 cut(s)	2228
PsiI	TTATAA	2 cut(s)	1820, 2426
Psp124BI	GAGCTC	2 cut(s)	217, 1527
Psp5II	RGGWCCY	3 cut(s)	79, 620, 1097
Psp6I	CCWGG	5 cut(s)	1607, 2103, 2278, 2637, 2705
PspEI	GGTNACC	1 cut(s)	3005
PspFI	CCCAGC	1 cut(s)	747
PspGI	CCWGG	5 cut(s)	1607, 2103, 2278, 2637, 2705
PspN4I	GGNNCC	8 cut(s)	112, 309, 443, 1098, 2010, 2075, 2572, 3170
PspPI	GGNCC	7 cut(s)	33, 79, 110, 307, 442, 620, 1097
PspPPI	RGGWCCY	3 cut(s)	79, 620, 1097
PspXI	VCTCGAGB	1 cut(s)	95
PstI	CTGCAG	3 cut(s)	967, 1041, 3036
PstNI	CAGNNNCTG	2 cut(s)	1036, 2984
PsuI	RGATCY	3 cut(s)	820, 1434, 1885
PsyI	GACNNNGTC	2 cut(s)	242, 718
PvuII	CAGCTG	2 cut(s)	2696, 3129
RsaI	GTAC	4 cut(s)	2295, 2463, 2765, 3170
RsaNI	GTAC	4 cut(s)	2294, 2462, 2764, 3169
RseI	CAYNNNNRTG	3 cut(s)	374, 2382, 2939
SacI	GAGCTC	2 cut(s)	217, 1527
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	8 cut(s)	531, 554, 927, 1767, 1974, 2063, 2135, 2714
Sau3AI	GATC	9 cut(s)	649, 820, 976, 1352, 1434, 1885, 2401, 2503, 3067
Sau96I	GGNCC	7 cut(s)	33, 79, 110, 307, 442, 620, 1097
ScrFI	CCNGG	9 cut(s)	298, 346, 401, 1609, 2105, 2280, 2395, 2639, 2707
SduI	GDGCHC	5 cut(s)	217, 1527, 2049, 2692, 2936
SfaNI	GCATC	4 cut(s)	189, 1890, 2016, 2203
SfcI	CTRYAG	5 cut(s)	699, 963, 1037, 3032, 3095
Sfr274I	CTCGAG	1 cut(s)	95
Sfr303I	CCGCGG	1 cut(s)	169
SfuI	TTCGAA	3 cut(s)	635, 2158, 3120
SgrBI	CCGCGG	1 cut(s)	169
SinI	GGWCC	5 cut(s)	79, 307, 442, 620, 1097
SlaI	CTCGAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	3 cut(s)	374, 2382, 2939
SmlI	CTYRAG	5 cut(s)	95, 584, 1046, 2297, 3086
SmoI	CTYRAG	5 cut(s)	95, 584, 1046, 2297, 3086
SnaBI	TACGTA	1 cut(s)	1727
SseBI	AGGCCT	1 cut(s)	2374
SspMI	CTAG	7 cut(s)	141, 197, 1461, 1838, 1934, 2321, 2591
SstI	GAGCTC	2 cut(s)	217, 1527
StuI	AGGCCT	1 cut(s)	2374
StyD4I	CCNGG	9 cut(s)	296, 344, 399, 1607, 2103, 2278, 2393, 2637, 2705
StyI	CCWWGG	4 cut(s)	75, 1987, 2661, 3227
TaiI	ACGT	1 cut(s)	1729
TatI	WGTACW	1 cut(s)	2763
TauI	GCSGC	5 cut(s)	171, 180, 304, 427, 2079
TfiI	GAWTC	8 cut(s)	754, 893, 913, 1636, 1807, 1955, 2100, 3072
Tru1I	TTAA	8 cut(s)	531, 554, 927, 1767, 1974, 2063, 2135, 2714
Tru9I	TTAA	8 cut(s)	531, 554, 927, 1767, 1974, 2063, 2135, 2714
TscAI	CASTG	4 cut(s)	1018, 1393, 1447, 2820
TseFI	GTSAC	8 cut(s)	46, 455, 1771, 2254, 2512, 2924, 3081, 3175
Tsp45I	GTSAC	8 cut(s)	46, 455, 1771, 2254, 2512, 2924, 3081, 3175
TspGWI	ACGGA	1 cut(s)	2500
TspRI	CASTG	4 cut(s)	1018, 1393, 1447, 2820
Tth111I	GACNNNGTC	2 cut(s)	242, 718
Van91I	CCANNNNNTGG	1 cut(s)	2215
VneI	GTGCAC	1 cut(s)	2688
VpaK11BI	GGWCC	5 cut(s)	79, 307, 442, 620, 1097
XagI	CCTNNNNNAGG	1 cut(s)	3098
XapI	RAATTY	6 cut(s)	1357, 1659, 1742, 2200, 2526, 2726
XceI	RCATGY	1 cut(s)	2232
XcmI	CCANNNNNNNNNTGG	2 cut(s)	376, 1664
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	1832
XmnI	GAANNNNTTC	2 cut(s)	1591, 2204
XspI	CTAG	7 cut(s)	141, 197, 1461, 1838, 1934, 2321, 2591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.